Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 1.3e-174 616.3 313 100.0
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 9.0e-152 540.4 313 88.8
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 6.3e-129 464.5 310 79.7
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 2.3e-115 419.5 313 70.9
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.0e-115 419.1 313 70.9
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 1.1e-114 417.2 313 70.6
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.1e-114 417.2 313 70.6
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.2e-113 412.9 310 70.6
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.4e-112 409.5 310 70.3
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 2.0e-111 406.4 309 70.2
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.7e-110 403.3 310 70.3
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 5.5e-109 398.3 310 69.7
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 2.7e-108 396.0 311 66.9
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 8.8e-107 391.0 311 67.8
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 2.8e-105 386.0 311 66.6
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 1.1e-104 384.0 310 66.5
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 1.4e-104 383.6 313 67.7
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 1.4e-104 383.6 310 67.1
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 5.3e-104 381.7 268 72.0
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 1.6e-103 380.2 312 64.4
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 7.7e-103 377.9 254 75.6
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 2.2e-102 376.3 309 66.3
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 2.9e-102 375.9 311 65.6
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 6.5e-102 374.8 311 64.0
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 1.1e-101 374.0 323 63.8
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 1.5e-101 373.6 322 64.0
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 1.5e-101 373.6 312 65.1
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 3.2e-101 372.5 347 60.5
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 4.2e-101 372.1 320 62.2
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 7.2e-101 371.3 312 63.8
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 7.2e-101 371.3 311 63.3
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 1.6e-100 370.2 308 61.7
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 1.6e-100 370.2 311 64.0
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 4.7e-100 368.6 310 65.5
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 1.4e-99 367.1 311 60.1
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 1.4e-99 367.1 311 60.1
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 1.4e-99 367.1 311 62.7
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 1.8e-99 366.7 314 62.7
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 5.2e-99 365.2 309 63.1
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 8.8e-99 364.4 312 63.8
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 2.0e-98 363.2 311 63.3
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 9.8e-98 360.9 311 61.1
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 1.7e-97 360.1 314 62.4
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 2.8e-97 359.4 311 59.8
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 3.7e-97 359.0 309 60.5
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 4.8e-97 358.6 270 70.0
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 2.4e-96 356.3 311 60.1
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 9.1e-96 354.4 311 63.7
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.2e-95 354.0 270 68.5
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 1.7e-94 350.1 313 59.4
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 1.1e-93 347.4 310 61.6
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 2.5e-93 346.3 311 61.1
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 3.3e-93 345.9 316 58.9
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 5.5e-93 345.1 311 62.1
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 7.2e-93 344.7 312 57.4
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 2.1e-92 343.2 310 61.0
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 2.8e-92 342.8 316 58.5
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 3.6e-92 342.4 314 62.1
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 1.8e-91 340.1 316 58.9
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 1.8e-91 340.1 315 59.0
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 3.0e-91 339.3 311 60.1
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 4.0e-91 339.0 310 59.7
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 5.2e-91 338.6 316 58.2
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 5.2e-91 338.6 316 58.2
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 6.8e-91 338.2 316 58.2
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 6.8e-91 338.2 316 58.2
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 8.9e-91 337.8 314 58.9
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 1.2e-90 337.4 310 60.0
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 3.4e-90 335.9 323 55.7
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 1.7e-89 333.6 316 57.0
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 1.7e-89 333.6 280 63.2
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 2.2e-89 333.2 312 57.1
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 8.3e-89 331.3 273 63.7
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 1.4e-88 330.5 310 61.0
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 3.1e-88 329.3 300 61.0
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 3.1e-88 329.3 318 57.2
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 1.0e-86 324.3 317 57.7
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 2.3e-86 323.2 265 63.0
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 2.9e-86 322.8 310 59.0
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 8.6e-86 321.2 315 55.9
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 8.6e-86 321.2 309 57.6
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 7.3e-85 318.2 309 57.0
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 9.5e-85 317.8 309 54.7
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 3.6e-84 315.8 311 55.3
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 4.7e-84 315.5 311 57.2
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 2.9e-81 306.2 311 56.9
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.9e-80 303.5 313 57.2
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.7e-79 299.7 260 59.6
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 6.0e-79 298.5 264 58.3
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 3.9e-78 295.8 310 54.5
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 4.3e-77 292.4 206 74.3
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 7.3e-77 291.6 312 56.4
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 1.6e-76 290.4 257 58.4
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 4.0e-75 285.8 311 54.3
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 5.8e-74 282.0 312 52.9
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 3.2e-72 276.2 203 69.0
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 4.1e-72 275.8 312 52.2
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 3.5e-71 272.7 281 55.5
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 4.1e-64 249.2 326 48.2
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 1.3e-62 244.2 243 56.4
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 6.6e-62 241.9 312 48.1
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 4.2e-56 222.6 241 51.0
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 2.3e-54 216.9 312 43.3
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 3.1e-51 206.5 271 47.6
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 2.6e-50 203.4 303 43.6
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 4.9e-49 199.1 268 44.0
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 1.4e-43 181.0 132 70.5
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 1.4e-43 181.0 278 43.5
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 1.8e-43 180.6 187 53.5
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 4.0e-43 179.5 265 42.6
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 9.0e-43 178.3 142 62.7
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 2.3e-38 163.7 263 42.6
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 2.5e-37 160.2 120 67.5
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 7.4e-37 158.7 271 39.9
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 2.1e-36 157.1 126 63.5
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 2.8e-36 156.8 313 38.0
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 4.8e-36 156.0 312 37.8
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 1.8e-35 154.1 147 59.2
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 4.2e-32 142.9 177 47.5
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.1e-31 140.6 177 46.9
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 1.8e-30 137.5 193 45.1
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 8.7e-30 135.2 139 56.8
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 2.0e-26 124.0 127 52.0
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 3.2e-24 116.7 151 46.4
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 9.3e-24 115.2 121 50.4
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 3.9e-22 109.8 108 56.5
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 5.1e-22 109.4 158 44.9
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 9.7e-21 105.1 106 50.9
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 1.6e-20 104.4 108 59.3
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 3.7e-20 103.2 135 45.9
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 1.9e-16 90.9 113 50.4
COL.COLO4_02792 Corchorus olitorius HOM05D000974 ORTHO05D007456 5.1e-06 56.2 32 75.0


User provided reference genes

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