Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1212400 Malus domestica HOM05D000059 ORTHO05D010744 9.8e-45 183.0 84 100.0
MD03G1165100 Malus domestica HOM05D000059 ORTHO05D000128 8.7e-09 63.5 43 76.7
COL.COLO4_17552 Corchorus olitorius HOM05D000059 ORTHO05D000128 1.5e-08 62.8 43 74.4
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 1.9e-08 62.4 43 74.4
Prupe.4G263600 Prunus persica HOM05D000059 ORTHO05D000128 1.9e-08 62.4 43 74.4
Sabra09G0052100 Salix brachista HOM05D000059 ORTHO05D000128 5.6e-08 60.8 43 72.1
FAN21G3658 Fragaria x ananassa HOM05D000059 ORTHO05D000128 7.3e-08 60.5 43 72.1
Manes.02G138500 Manihot esculenta HOM05D000059 ORTHO05D000128 7.3e-08 60.5 43 72.1
Nn2g14784 Nelumbo nucifera HOM05D000059 ORTHO05D000128 7.3e-08 60.5 43 72.1
Sabra16G0169100 Salix brachista HOM05D000059 ORTHO05D000128 7.3e-08 60.5 43 72.1
ECA240G1685 Erigeron canadensis HOM05D000059 ORTHO05D000128 9.6e-08 60.1 43 72.1
PSO339G2983 Papaver somniferum HOM05D000059 ORTHO05D000128 9.6e-08 60.1 43 72.1
PSO384G4316 Papaver somniferum HOM05D000059 ORTHO05D000128 9.6e-08 60.1 43 72.1
TAR369G0517 Trochodendron aralioides HOM05D000059 ORTHO05D000128 9.6e-08 60.1 43 72.1
Aa31LG3G15050 Aethionema arabicum HOM05D000059 ORTHO05D000128 1.2e-07 59.7 43 69.8
Ciclev10014854m.g Citrus clementina HOM05D000059 ORTHO05D000128 1.2e-07 59.7 43 72.1
Os05g0491900 Oryza sativa ssp. japonica HOM05D000059 ORTHO05D000128 2.1e-07 58.9 43 69.8
Aa31LG1G8840 Aethionema arabicum HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
ATR0621G004 Amborella trichopoda HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
AL6G22960 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
AL6G30850 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
AT5G12180 Arabidopsis thaliana HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
AT5G19360 Arabidopsis thaliana HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
BcaC03g13668 Brassica carinata HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
A02p01420 Brassica napus HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
A02p05500 Brassica napus HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
A03p05420 Brassica napus HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
A10p25620 Brassica napus HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
BNapus_Darmor_BZH_scaffold_38p02560 Brassica napus HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
C02p05660 Brassica napus HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
C03p06310 Brassica napus HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
C09p64700 Brassica napus HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
BolC2t06510H Brassica oleracea HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
BolC3t13139H Brassica oleracea HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
BraA02t05121Z Brassica rapa HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
BraA02t05501Z Brassica rapa HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
Carub.0006s1068 Capsella rubella HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
CARHR193600 Cardamine hirsuta HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
CARHR200940 Cardamine hirsuta HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
Thhalv10013236m.g Eutrema salsugineum HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
Thhalv10013240m.g Eutrema salsugineum HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
Gohir.A05G073800 Gossypium hirsutum HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
PGR102G0377 Punica granatum HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
Sp6g25050 Schrenkiella parvula HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
Sp6g31460 Schrenkiella parvula HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
THA.LOC104799135 Tarenaya hassleriana HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
THA.LOC104811200 Tarenaya hassleriana HOM05D000059 ORTHO05D000128 2.8e-07 58.5 43 69.8
HPP92_014337 Vanilla planifolia HOM05D000059 ORTHO05D010744 2.8e-07 58.5 43 69.8
Carub.0006s1770 Capsella rubella HOM05D000059 ORTHO05D000128 4.7e-07 57.8 43 67.4
TAR623G0405 Trochodendron aralioides HOM05D000059 ORTHO05D000128 4.7e-07 57.8 43 69.8
TAR636G3240 Trochodendron aralioides HOM05D000059 ORTHO05D000128 4.7e-07 57.8 43 69.8
MBI13_g32991_MAGBIO Magnolia biondii HOM05D000059 ORTHO05D000128 6.2e-07 57.4 43 67.4
MD11G1184100 Malus domestica HOM05D000059 ORTHO05D000128 6.2e-07 57.4 42 71.4
Potri.001G274700 Populus trichocarpa HOM05D000059 ORTHO05D000128 6.2e-07 57.4 43 69.8
A10p20320 Brassica napus HOM05D000059 ORTHO05D000128 8.1e-07 57.0 43 67.4
C09p56920 Brassica napus HOM05D000059 ORTHO05D000128 8.1e-07 57.0 43 67.4
BolC9t58546H Brassica oleracea HOM05D000059 ORTHO05D000128 8.1e-07 57.0 43 67.4
BraA10t44103Z Brassica rapa HOM05D000059 ORTHO05D000128 8.1e-07 57.0 43 67.4
Nitab4.5_0003488g0030 Nicotiana tabacum HOM05D000059 ORTHO05D000128 8.1e-07 57.0 39 74.4
Actinidia06969 Actinidia chinensis HOM05D000059 ORTHO05D030849 1.1e-06 56.6 41 70.7
Nn7g37038 Nelumbo nucifera HOM05D000059 ORTHO05D010744 1.1e-06 56.6 53 54.7
Nn7g37045 Nelumbo nucifera HOM05D000059 ORTHO05D010744 1.1e-06 56.6 53 54.7
Haze_23249 Corylus avellana HOM05D000059 ORTHO05D000128 2.4e-06 55.5 43 67.4
AT4G04695 Arabidopsis thaliana HOM05D000059 ORTHO05D023679 6.9e-06 53.9 51 56.9


User provided reference genes

Program Settings