Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 0.0e+00 1213.7 597 100.0
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 1.6e-245 852.8 444 94.4
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 4.7e-234 814.7 441 90.7
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 2.2e-207 726.1 560 68.4
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 7.8e-205 717.6 440 80.2
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 2.5e-203 712.6 566 67.7
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.3e-203 711.1 433 80.8
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.6e-202 709.9 433 80.6
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.6e-202 709.9 433 80.8
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.1e-201 707.2 433 80.4
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 5.3e-201 704.9 448 78.6
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 9.0e-201 704.1 448 78.3
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.5e-200 703.4 433 79.9
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.0e-200 703.0 433 79.9
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 9.3e-198 694.1 448 77.0
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.2e-197 693.7 448 77.2
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 3.7e-194 682.2 441 76.9
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 3.7e-194 682.2 450 76.9
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.4e-193 680.2 433 76.9
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 2.4e-193 679.5 432 78.7
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 2.6e-192 676.0 449 76.6
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 4.5e-192 675.2 446 75.1
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.1e-190 670.6 450 75.1
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 3.2e-190 669.1 442 75.1
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.3e-188 663.7 454 74.2
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 2.3e-188 662.9 441 74.1
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 1.1e-187 660.6 450 74.2
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.5e-184 650.2 442 74.9
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 1.5e-184 650.2 452 72.3
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 5.8e-184 648.3 448 73.4
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 1.3e-183 647.1 442 72.2
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 2.9e-183 646.0 441 73.0
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 8.4e-183 644.4 442 72.9
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.9e-182 643.3 448 72.5
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 4.2e-182 642.1 452 72.3
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 5.5e-182 641.7 562 63.5
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 1.0e-180 637.5 452 72.3
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 1.0e-180 637.5 444 71.4
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 1.0e-180 637.5 447 72.3
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 2.3e-180 636.3 447 70.9
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 8.7e-180 634.4 460 70.2
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 1.1e-179 634.0 450 70.2
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 4.3e-179 632.1 446 70.4
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 7.4e-179 631.3 444 70.9
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 9.7e-179 630.9 447 70.7
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 1.3e-178 630.6 439 71.1
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 1.3e-178 630.6 459 70.6
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 2.2e-178 629.8 447 70.5
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 3.7e-178 629.0 460 69.6
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 4.8e-178 628.6 443 73.1
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.4e-177 627.1 469 68.7
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 1.4e-177 627.1 460 69.6
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 5.3e-177 625.2 537 60.7
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 9.0e-177 624.4 439 71.8
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 5.9e-176 621.7 445 69.9
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 7.6e-176 621.3 448 69.6
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 5.0e-175 618.6 447 70.2
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 1.4e-174 617.1 459 68.4
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 1.9e-174 616.7 439 69.5
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 3.2e-174 615.9 440 70.0
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 6.1e-173 611.7 456 68.6
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 1.0e-172 610.9 496 65.1
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 3.0e-172 609.4 445 69.9
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 2.5e-171 606.3 439 69.7
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 3.3e-171 605.9 442 68.8
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 7.4e-171 604.7 442 68.6
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 4.8e-170 602.1 442 68.3
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 1.4e-169 600.5 442 68.1
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 1.4e-169 600.5 442 68.1
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 1.8e-169 600.1 446 67.9
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 2.4e-169 599.7 446 66.4
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 9.1e-169 597.8 446 67.7
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 2.6e-168 596.3 450 66.9
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.7e-167 593.6 441 68.7
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 2.9e-167 592.8 445 65.4
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 2.9e-167 592.8 437 67.3
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 4.2e-166 589.0 448 67.9
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 4.2e-166 589.0 450 65.1
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 3.6e-165 585.9 441 67.6
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 1.4e-164 583.9 439 67.7
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 3.9e-164 582.4 454 66.3
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 1.5e-163 580.5 443 66.6
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 1.5e-163 580.5 450 64.4
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 5.7e-163 578.6 454 65.6
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 1.3e-162 577.4 428 68.9
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 8.2e-162 574.7 428 67.8
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 8.5e-159 564.7 442 63.8
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 1.2e-157 560.8 446 65.0
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 6.1e-157 558.5 417 66.4
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 3.9e-156 555.8 449 64.8
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 3.9e-156 555.8 449 63.3
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 2.6e-155 553.1 445 66.1
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 6.3e-154 548.5 554 54.9
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 2.6e-147 526.6 343 74.9
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 5.7e-147 525.4 449 61.0
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 6.3e-146 521.9 437 63.8
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 2.1e-141 506.9 443 58.5
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 2.7e-141 506.5 436 60.6
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 5.2e-140 502.3 452 60.0
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 6.8e-140 501.9 273 89.0
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 6.8e-140 501.9 570 50.4
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 5.7e-139 498.8 449 57.0
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 4.5e-136 489.2 451 59.4
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 4.5e-136 489.2 285 82.5
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.3e-135 487.6 414 62.3
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 1.6e-133 480.7 269 85.1
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.4e-132 477.6 438 56.8
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 4.7e-109 399.4 442 52.5
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 2.9e-106 390.2 408 52.5
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 2.1e-104 384.0 213 84.5
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 7.8e-104 382.1 370 54.6
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 3.5e-96 356.7 455 46.6
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 2.4e-92 344.0 259 67.2
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 7.1e-89 332.4 284 57.7
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 8.4e-74 282.3 150 90.0
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 5.1e-71 273.1 477 37.7
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 6.2e-69 266.2 301 46.8
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 4.0e-68 263.5 295 49.5
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 5.0e-58 229.9 478 32.8
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 2.0e-46 191.4 247 45.7
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 2.4e-44 184.5 240 48.3
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 1.8e-36 158.3 120 60.8
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 2.6e-35 154.5 174 51.1
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 5.0e-34 150.2 95 75.8
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 2.1e-32 144.8 192 37.5
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 4.7e-24 117.1 80 66.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.0e-23 115.9 62 85.5
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 8.3e-13 79.7 65 55.4
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 2.9e-10 71.2 34 94.1


User provided reference genes

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