Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 4.6e-191 671.0 328 100.0
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 2.7e-151 538.9 328 81.7
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 5.7e-141 504.6 325 76.6
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.9e-137 492.3 325 73.5
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.6e-137 490.7 325 73.8
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.5e-136 490.0 325 73.8
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 2.6e-133 479.2 325 72.0
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.0e-130 469.5 339 69.0
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.7e-130 469.2 339 68.7
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 4.9e-124 448.4 321 66.4
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 3.2e-123 445.7 325 68.0
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 1.6e-122 443.4 328 67.7
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.5e-120 436.0 345 63.5
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 3.3e-120 435.6 304 66.1
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 7.3e-120 434.5 325 66.5
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 3.1e-118 429.1 384 59.1
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.0e-118 428.7 300 70.7
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 5.2e-118 428.3 360 60.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 1.2e-117 427.2 336 65.2
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 8.3e-116 421.0 312 66.0
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.1e-115 420.6 328 63.1
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 1.1e-115 420.6 321 65.4
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 1.4e-115 420.2 326 64.1
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 9.2e-115 417.5 323 63.5
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 9.2e-115 417.5 330 63.0
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.7e-114 416.0 284 69.0
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 7.8e-114 414.5 321 62.9
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.3e-113 413.7 322 64.0
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 3.0e-113 412.5 328 63.7
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 3.0e-113 412.5 327 63.6
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 6.6e-113 411.4 287 70.0
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 6.6e-113 411.4 321 62.9
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.1e-112 410.6 328 62.5
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.1e-112 410.6 329 61.7
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.5e-112 409.5 284 68.3
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 5.6e-112 408.3 284 68.3
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 9.5e-112 407.5 329 62.0
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 2.8e-111 406.0 327 63.6
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 2.8e-111 406.0 327 63.6
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 3.6e-111 405.6 329 60.5
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 6.2e-111 404.8 325 60.9
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 6.2e-111 404.8 329 60.8
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 8.1e-111 404.4 329 62.3
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 8.1e-111 404.4 280 66.4
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 8.1e-111 404.4 280 66.4
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.1e-110 402.5 327 60.9
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 1.5e-109 400.2 328 62.5
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 1.5e-109 400.2 323 62.2
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 2.0e-109 399.8 327 60.6
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 2.9e-108 396.0 329 60.2
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 4.9e-108 395.2 329 60.8
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.1e-107 394.0 295 64.7
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 1.4e-107 393.7 392 54.8
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 2.4e-107 392.9 321 60.4
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 4.1e-107 392.1 279 67.4
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 5.4e-107 391.7 318 61.6
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 7.1e-107 391.3 274 67.2
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.2e-106 390.6 304 63.5
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 4.6e-106 388.7 314 62.1
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 4.6e-106 388.7 309 62.8
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.3e-105 387.1 331 60.4
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 1.3e-105 387.1 317 60.9
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 1.7e-105 386.7 265 68.7
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 3.0e-105 386.0 311 62.7
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 3.0e-105 386.0 309 61.5
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 6.6e-105 384.8 323 59.1
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.9e-104 383.3 327 59.9
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 4.3e-104 382.1 325 60.3
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 5.6e-104 381.7 362 56.4
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 9.6e-104 380.9 321 60.1
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 1.2e-103 380.6 321 60.4
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 2.8e-103 379.4 314 60.2
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 4.7e-103 378.6 299 62.5
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 8.1e-103 377.9 321 59.5
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 1.1e-102 377.5 330 59.4
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.4e-102 376.3 286 63.6
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 6.8e-102 374.8 314 60.2
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 6.8e-102 374.8 331 59.5
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 7.6e-101 371.3 325 59.1
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 9.9e-101 370.9 328 55.8
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 2.2e-100 369.8 284 65.5
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.1e-99 367.5 331 58.9
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.4e-99 367.1 322 58.4
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 1.4e-99 367.1 278 64.4
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 7.1e-99 364.8 309 59.5
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.5e-98 362.5 286 62.9
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 7.8e-98 361.3 248 67.3
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.3e-97 360.5 304 57.6
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 2.3e-97 359.8 357 53.5
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 3.9e-97 359.0 286 60.8
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 5.1e-97 358.6 322 56.5
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 6.6e-97 358.2 290 61.4
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 8.7e-97 357.8 376 52.4
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 8.7e-97 357.8 288 60.4
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.1e-96 357.5 286 61.9
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.5e-96 357.1 288 59.7
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.9e-96 356.7 297 59.6
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 2.5e-96 356.3 283 60.1
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 9.6e-96 354.4 294 58.8
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.3e-95 354.0 279 61.3
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 1.3e-95 354.0 343 56.0
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.1e-95 353.2 283 60.4
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 4.8e-95 352.1 329 54.4
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.1e-94 350.9 292 62.7
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 1.1e-94 350.9 295 59.0
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.4e-94 350.5 328 56.7
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.4e-94 349.7 328 57.0
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 4.0e-94 349.0 255 63.5
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.7e-92 343.6 269 60.6
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 2.2e-92 343.2 213 76.1
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 3.9e-89 332.4 273 59.0
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.4e-86 323.9 226 67.3
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 1.5e-85 320.5 366 48.1
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 4.9e-84 315.5 331 52.9
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.5e-83 312.0 310 52.6
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.6e-80 302.0 213 68.5
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 3.7e-79 299.3 292 50.0
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 6.9e-78 295.0 230 62.6
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.7e-76 290.4 193 72.5
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 8.4e-76 288.1 238 59.7
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.3e-71 274.2 230 55.7
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.8e-68 262.7 211 61.1
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 7.2e-67 258.5 235 53.2
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 2.7e-66 256.5 266 48.9
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 3.7e-63 246.1 235 49.8
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 3.7e-63 246.1 235 49.8
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 1.2e-61 241.1 198 61.1
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 3.8e-60 236.1 156 68.6
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 3.8e-60 236.1 200 59.0
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.6e-58 230.7 144 69.4
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 2.6e-56 223.4 213 54.9
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 3.3e-56 223.0 271 43.2
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 5.9e-53 212.2 161 64.0
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 5.5e-51 205.7 214 51.9
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 1.0e-49 201.4 165 61.8
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.7e-47 194.1 167 62.9
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.0e-45 187.2 193 50.3
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 2.6e-45 186.8 238 39.9
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.1e-43 181.4 159 56.6
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.9e-43 180.6 194 50.0
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 2.6e-40 170.2 146 63.7
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 2.8e-39 166.8 294 37.4
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 1.1e-35 154.8 204 43.6
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 3.0e-33 146.7 82 90.2
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 5.2e-33 146.0 153 49.7
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 5.7e-32 142.5 171 52.0
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.2e-31 140.6 107 60.7
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 6.3e-23 112.5 273 31.9
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.8e-22 110.9 76 67.1
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 5.0e-20 102.8 72 62.5
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 5.6e-19 99.4 106 45.3
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.6e-18 97.8 72 56.9
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.6e-18 97.8 76 59.2
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 5.2e-17 92.8 125 47.2
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 2.8e-10 70.5 36 86.1
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 4.0e-09 66.6 183 27.9


User provided reference genes

Program Settings