Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 2.0e-97 359.4 215 100.0
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 2.6e-86 322.4 215 91.2
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 1.1e-76 290.4 215 82.8
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.5e-70 268.9 216 80.6
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 1.3e-69 266.9 216 79.6
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.3e-69 266.9 216 79.6
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 8.5e-69 264.2 216 79.2
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.5e-68 263.5 216 79.6
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.1e-67 258.1 216 78.7
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 1.2e-62 243.8 204 79.4
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 1.3e-61 240.4 213 75.6
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 2.3e-61 239.6 212 75.5
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 7.3e-60 234.6 213 73.7
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 4.7e-59 231.9 213 73.2
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 1.8e-58 229.9 216 74.5
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.0e-54 216.5 216 69.9
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 1.8e-50 203.4 215 58.1
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.8e-50 203.4 213 52.1
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 2.3e-50 203.0 213 56.3
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 8.9e-50 201.1 214 58.4
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 8.9e-50 201.1 214 58.4
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 1.2e-49 200.7 213 59.6
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 1.5e-49 200.3 146 69.2
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 1.5e-49 200.3 213 57.7
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 2.6e-49 199.5 212 59.9
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 3.4e-49 199.1 213 57.7
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 1.3e-48 197.2 214 57.5
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 1.3e-48 197.2 210 56.2
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 1.3e-48 197.2 215 65.6
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 3.7e-48 195.7 148 66.2
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 1.1e-47 194.1 212 63.7
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 2.4e-47 193.0 213 55.4
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 6.0e-46 188.3 213 56.3
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 7.8e-46 188.0 200 57.0
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 1.7e-45 186.8 213 52.6
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 5.0e-45 185.3 213 54.5
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.9e-44 183.3 212 56.6
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 2.8e-43 179.5 214 53.3
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 3.6e-43 179.1 210 55.2
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 4.7e-43 178.7 215 52.1
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 6.2e-43 178.3 207 61.4
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 2.3e-42 176.4 210 52.9
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 4.0e-42 175.6 207 60.4
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.2e-42 175.3 214 54.7
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 5.2e-42 175.3 214 54.2
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 1.2e-41 174.1 213 55.4
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.6e-41 172.9 214 49.5
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 4.4e-41 172.2 207 60.9
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 4.4e-41 172.2 213 51.6
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.7e-40 170.2 210 50.0
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.7e-40 170.2 210 50.0
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 2.9e-40 169.5 207 48.8
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 3.7e-40 169.1 210 49.0
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 3.7e-40 169.1 210 49.0
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 4.9e-40 168.7 207 62.3
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 8.3e-40 167.9 208 61.1
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.2e-38 164.1 210 53.3
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.2e-38 164.1 212 56.1
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.1e-38 163.3 211 53.6
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 2.1e-38 163.3 213 62.4
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 2.7e-38 162.9 202 47.0
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 2.7e-38 162.9 214 52.8
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 4.6e-38 162.2 210 50.0
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 6.0e-38 161.8 212 50.5
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.3e-37 160.6 213 52.6
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.7e-37 160.2 212 50.5
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.7e-37 160.2 210 51.4
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 2.3e-37 159.8 210 51.4
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 3.9e-37 159.1 208 53.4
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.1e-37 158.7 214 51.4
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.6e-37 158.3 214 51.4
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 6.6e-37 158.3 214 51.4
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 8.6e-37 157.9 198 53.0
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 3.3e-36 156.0 209 56.9
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 1.2e-35 154.1 213 61.5
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 4.7e-35 152.1 215 50.2
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 8.1e-35 151.4 201 52.2
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.3e-34 149.8 198 51.5
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 3.1e-34 149.4 196 45.4
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 6.8e-34 148.3 213 49.3
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 8.9e-34 147.9 212 51.9
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.6e-33 146.4 215 50.7
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 2.6e-33 146.4 202 52.0
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 3.4e-33 146.0 209 56.9
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 5.8e-33 145.2 215 50.2
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 1.3e-32 144.1 210 45.7
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.3e-32 144.1 215 50.7
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.7e-32 143.7 201 49.8
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 4.9e-32 142.1 215 47.4
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 1.1e-31 141.0 207 60.9
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 1.4e-31 140.6 210 41.0
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 1.4e-31 140.6 208 49.5
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 4.1e-31 139.0 207 58.5
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 5.4e-31 138.7 207 59.4
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 5.4e-31 138.7 212 47.6
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.2e-30 137.5 201 50.2
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 1.6e-30 137.1 207 58.5
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 2.1e-30 136.7 148 50.7
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.7e-30 136.3 201 50.2
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 4.6e-30 135.6 192 44.8
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 1.0e-29 134.4 207 52.2
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.7e-29 133.7 150 51.3
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 3.9e-29 132.5 192 43.8
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.9e-29 132.5 201 49.8
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 5.1e-29 132.1 196 48.5
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 1.1e-28 131.0 207 51.2
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 1.2e-27 127.5 202 45.5
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 2.1e-27 126.7 210 46.7
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 2.8e-27 126.3 208 55.8
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 8.1e-27 124.8 203 57.6
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 2.4e-26 123.2 207 58.9
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 2.4e-26 123.2 207 50.2
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 3.1e-26 122.9 216 44.0
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 3.1e-26 122.9 129 46.5
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 4.0e-26 122.5 211 44.5
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 4.0e-26 122.5 207 52.2
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 6.9e-26 121.7 266 35.3
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 3.4e-25 119.4 208 53.4
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 3.4e-25 119.4 213 39.4
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 5.8e-25 118.6 208 55.8
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 9.9e-25 117.9 199 39.7
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 9.9e-25 117.9 214 40.7
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.9e-24 116.3 214 39.7
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 4.9e-24 115.5 214 39.7
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 6.4e-24 115.2 215 39.5
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 4.2e-23 112.5 201 41.8
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 4.2e-23 112.5 213 44.1
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 5.4e-23 112.1 214 40.2
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 5.4e-23 112.1 213 38.0
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 7.1e-23 111.7 228 40.4
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 1.2e-22 110.9 205 53.7
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 1.2e-22 110.9 198 46.0
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 3.5e-22 109.4 214 39.3
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 5.1e-21 105.5 202 40.6
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 8.7e-21 104.8 212 38.7
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 1.1e-20 104.4 204 42.2
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 1.5e-20 104.0 215 39.1
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 3.3e-20 102.8 199 38.2
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 4.3e-20 102.4 199 38.2
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 7.3e-20 101.7 197 39.6
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.8e-19 99.8 192 40.6
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 4.8e-19 99.0 208 44.2
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 6.2e-19 98.6 207 43.5
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 8.1e-19 98.2 199 37.7
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 8.1e-19 98.2 198 41.9
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 6.9e-18 95.1 198 36.4
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 9.0e-18 94.7 197 39.1
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 9.0e-18 94.7 210 40.5
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.5e-17 94.0 142 50.7
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 2.0e-17 93.6 200 43.5
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 4.5e-17 92.4 218 41.7
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 7.6e-17 91.7 207 34.8
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 7.6e-17 91.7 166 53.6
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 2.2e-16 90.1 200 35.0
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 2.9e-16 89.7 132 63.6
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 3.8e-16 89.4 216 34.7
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 3.8e-16 89.4 214 37.4
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 6.4e-16 88.6 214 36.9
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 8.4e-16 88.2 200 35.0
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 1.1e-15 87.8 218 35.3
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 7.1e-15 85.1 205 49.3
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 1.6e-14 84.0 209 51.2
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 7.9e-14 81.6 106 45.3
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 1.0e-13 81.3 223 44.4
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 2.3e-13 80.1 121 38.8
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 6.7e-13 78.6 194 38.1
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 3.3e-12 76.3 195 31.8
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 4.3e-12 75.9 201 35.8
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 4.3e-12 75.9 201 35.8
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 2.8e-11 73.2 227 47.6
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 3.6e-11 72.8 190 37.4
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 4.8e-11 72.4 233 35.2
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.1e-10 71.2 106 72.6
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 1.1e-10 71.2 211 31.8
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 4.5e-09 65.9 214 47.7
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 5.8e-09 65.5 105 49.5
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 7.6e-09 65.1 142 35.9
VMungo0251G0932 Vigna mungo HOM05D002831 ORTHO05D004341 7.6e-09 65.1 118 33.9
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 3.2e-07 59.7 105 40.0
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 3.2e-07 59.7 105 40.0
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 4.2e-07 59.3 217 46.5
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 3.5e-06 56.2 210 41.4


User provided reference genes

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