Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1169900 Malus domestica HOM05D005345 ORTHO05D004682 3.0e-72 275.0 134 100.0
MD01G1169800 Malus domestica HOM05D005345 ORTHO05D004682 4.3e-34 148.3 109 73.4
Prupe.2G265800 Prunus persica HOM05D005345 ORTHO05D004682 8.3e-30 134.0 108 65.7
FvH4_7g26160 Fragaria vesca HOM05D005345 ORTHO05D004682 2.9e-22 109.0 107 57.0
FAN01G1672 Fragaria x ananassa HOM05D005345 ORTHO05D004682 6.4e-22 107.8 103 56.3
FAN06G3940 Fragaria x ananassa HOM05D005345 ORTHO05D004682 1.4e-21 106.7 107 56.1
RcHm_v2.0_Chr1g0372591 Rosa chinensis HOM05D005345 ORTHO05D004682 1.4e-21 106.7 101 58.4
FAN10G1366 Fragaria x ananassa HOM05D005345 ORTHO05D004682 2.1e-20 102.8 100 54.0
CANSAT56G0683 Cannabis sativa HOM05D005345 ORTHO05D004682 5.1e-19 98.2 112 52.7
CiPaw.01G307600 Carya illinoinensis HOM05D005345 ORTHO05D004682 2.8e-17 92.4 99 49.5
QL08p065100 Quercus lobata HOM05D005345 ORTHO05D004682 1.1e-16 90.5 100 49.0
Oeu039387.1 Olea europaea HOM05D005345 ORTHO05D004682 2.6e-15 85.9 96 46.9
Ciclev10030619m.g Citrus clementina HOM05D005345 ORTHO05D004682 4.4e-15 85.1 97 48.5
Potri.019G061400 Populus trichocarpa HOM05D005345 ORTHO05D004682 5.8e-15 84.7 97 46.4
TAR633G2169 Trochodendron aralioides HOM05D005345 ORTHO05D004682 3.7e-14 82.0 109 45.9
Dinv34499 Davidia involucrata HOM05D005345 ORTHO05D004682 3.2e-13 79.0 111 38.7
Dinv21859 Davidia involucrata HOM05D005345 ORTHO05D004682 9.2e-13 77.4 114 37.7
GSVIVG01032655001 Vitis vinifera HOM05D005345 ORTHO05D004682 9.2e-13 77.4 95 42.1
Sabra19G0075200 Salix brachista HOM05D005345 ORTHO05D004682 1.2e-12 77.0 116 39.7
Haze_17372 Corylus avellana HOM05D005345 ORTHO05D004682 1.6e-12 76.6 115 40.0
DCAR_020155 Daucus carota HOM05D005345 ORTHO05D004682 2.1e-12 76.3 68 51.5
Manes.07G142000 Manihot esculenta HOM05D005345 ORTHO05D004682 2.1e-12 76.3 107 37.4
TAR636G2104 Trochodendron aralioides HOM05D005345 ORTHO05D004682 2.1e-12 76.3 100 46.0
TWI53G1830 Tripterygium wilfordii HOM05D005345 ORTHO05D004682 3.5e-12 75.5 85 45.9
Lj1A968T60 Lonicera japonica HOM05D005345 ORTHO05D004682 6.0e-12 74.7 97 38.1
Manes.10G003400 Manihot esculenta HOM05D005345 ORTHO05D004682 6.0e-12 74.7 99 43.4
SGA_v2.0_scaffold60G20878 Striga asiatica HOM05D005345 ORTHO05D004682 1.3e-11 73.6 96 44.8
ClCG11G005600 Citrullus lanatus HOM05D005345 ORTHO05D004682 1.7e-11 73.2 107 41.1
Sed0004419 Sechium edule HOM05D005345 ORTHO05D004682 1.7e-11 73.2 110 40.0
Glyma.06G141400 Glycine max HOM05D005345 ORTHO05D004682 2.3e-11 72.8 129 41.9
SGA_v2.0_scaffold44G16618 Striga asiatica HOM05D005345 ORTHO05D004682 3.0e-11 72.4 75 46.7
TWI09G1031 Tripterygium wilfordii HOM05D005345 ORTHO05D004682 3.9e-11 72.0 88 44.3
CSS0024314 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 6.6e-11 71.2 113 35.4
Sed0015893 Sechium edule HOM05D005345 ORTHO05D004682 6.6e-11 71.2 108 39.8
RcHm_v2.0_Chr5g0080281 Rosa chinensis HOM05D000092 ORTHO05D000042 1.1e-10 70.5 121 40.5
arahy.Tifrunner.gnm1.ann1.0QV8DZ Arachis hypogaea HOM05D005345 ORTHO05D004682 1.5e-10 70.1 108 39.8
arahy.Tifrunner.gnm1.ann1.A39QJ2 Arachis hypogaea HOM05D005345 ORTHO05D004682 1.5e-10 70.1 108 39.8
MSTRG.8382 Avicennia marina HOM05D005345 ORTHO05D004682 1.5e-10 70.1 107 40.2
CsaV3_6G002400 Cucumis sativus L. HOM05D005345 ORTHO05D004682 1.5e-10 70.1 112 38.4
Thecc.10G185200 Theobroma cacao HOM05D005345 ORTHO05D004682 1.5e-10 70.1 107 41.1
MELO3C020021.2 Cucumis melo HOM05D005345 ORTHO05D004682 1.9e-10 69.7 106 37.7
Atru.chr12.192 Acer truncatum HOM05D005345 ORTHO05D004682 2.5e-10 69.3 105 41.0
COL.COLO4_19477 Corchorus olitorius HOM05D005345 ORTHO05D004682 7.3e-10 67.8 111 37.8
Lj8C52G6 Lonicera japonica HOM05D005345 ORTHO05D004682 7.3e-10 67.8 71 43.7
Phvul.008G186500 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 7.3e-10 67.8 110 39.1
Oeu006068.1 Olea europaea HOM05D005345 ORTHO05D004682 1.2e-09 67.0 99 39.4
Lj1g0012895 Lotus japonicus HOM05D005345 ORTHO05D004682 2.1e-09 66.2 112 41.1
Rhsim03G0153800 Rhododendron simsii HOM05D005345 ORTHO05D004682 2.1e-09 66.2 112 38.4
vmacro09953 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 2.1e-09 66.2 116 35.3
Glyma.14G186800 Glycine max HOM05D005345 ORTHO05D004682 2.8e-09 65.9 54 57.4
vmacro06904 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 2.8e-09 65.9 111 35.1
Prupe.4G213000 Prunus persica HOM05D005345 ORTHO05D004682 3.6e-09 65.5 74 50.0
TPR.G33934 Trifolium pratense HOM05D005345 ORTHO05D004682 3.6e-09 65.5 107 38.3
Cpa.g.sc19.39 Carica papaya HOM05D005345 ORTHO05D004682 4.7e-09 65.1 97 45.4
Sopen03g025560 Solanum pennellii HOM05D005345 ORTHO05D004682 4.7e-09 65.1 110 38.2
Actinidia07784 Actinidia chinensis HOM05D005345 ORTHO05D004682 8.1e-09 64.3 99 36.4
Lsat_1_v5_gn_2_126680 Lactuca sativa HOM05D005345 ORTHO05D004682 1.1e-08 63.9 93 38.7
Oeu018748.1 Olea europaea HOM05D001472 ORTHO05D002655 1.1e-08 63.9 108 38.9
PSO017G7165 Papaver somniferum HOM05D005345 ORTHO05D004682 1.1e-08 63.9 102 40.2
Ca_16857_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 1.4e-08 63.5 109 41.3
Migut.F00566 Erythranthe guttata HOM05D005345 ORTHO05D004682 1.8e-08 63.2 114 37.7
LjContig00408g0007312 Lotus japonicus HOM05D005345 ORTHO05D004682 1.8e-08 63.2 107 39.3
Medtr5g068060 Medicago truncatula HOM05D005345 ORTHO05D004682 1.8e-08 63.2 117 38.5
Rhsim09G0186300 Rhododendron simsii HOM05D005345 ORTHO05D004682 1.8e-08 63.2 117 33.3
Duzib114G0792 Durio zibethinus HOM05D005345 ORTHO05D004682 2.4e-08 62.8 107 39.3
Glyma.02G219400 Glycine max HOM05D005345 ORTHO05D004682 2.4e-08 62.8 54 55.6
Lsat_1_v5_gn_1_90561 Lactuca sativa HOM05D000041 ORTHO05D000452 2.4e-08 62.8 42 61.9
Gohir.D13G008100 Gossypium hirsutum HOM05D005345 ORTHO05D004682 3.1e-08 62.4 70 51.4
Gorai.013G008500 Gossypium raimondii HOM05D005345 ORTHO05D004682 3.1e-08 62.4 70 51.4
Psat2g061880 Pisum sativum HOM05D005345 ORTHO05D004682 3.1e-08 62.4 105 40.0
Actinidia22722 Actinidia chinensis HOM05D002045 ORTHO05D002014 5.2e-08 61.6 62 50.0
CAN.G1229.5 Capsicum annuum HOM05D005345 ORTHO05D004682 5.2e-08 61.6 115 37.4
Cc02_g05190 Coffea canephora HOM05D005345 ORTHO05D004682 5.2e-08 61.6 97 40.2
Nitab4.5_0005979g0010 Nicotiana tabacum HOM05D005345 ORTHO05D004682 5.2e-08 61.6 93 41.9
Duzib106G0455 Durio zibethinus HOM05D005345 ORTHO05D004682 6.8e-08 61.2 78 47.4
Eucgr.J00102 Eucalyptus grandis HOM05D005345 ORTHO05D004682 6.8e-08 61.2 97 38.1
HPP92_024982 Vanilla planifolia HOM05D005345 ORTHO05D004682 6.8e-08 61.2 106 34.9
AL6G15030 Arabidopsis lyrata HOM05D010812 ORTHO05D004682 8.9e-08 60.8 109 37.6
Carub.0006s0412 Capsella rubella HOM05D010812 ORTHO05D004682 8.9e-08 60.8 108 38.0
AT5G05190 Arabidopsis thaliana HOM05D010812 ORTHO05D004682 1.2e-07 60.5 109 39.4
SalBow3G3781 Salvia bowleyana HOM05D005345 ORTHO05D004682 1.2e-07 60.5 103 33.0
Actinidia31637 Actinidia chinensis HOM05D005345 ORTHO05D004682 1.5e-07 60.1 116 33.6
ATR1100G028 Amborella trichopoda HOM05D002045 ORTHO05D002014 1.5e-07 60.1 39 61.5
PSO170G1015 Papaver somniferum HOM05D005345 ORTHO05D004682 1.5e-07 60.1 76 47.4
PGSC0003DMG400022956 Solanum tuberosum HOM05D005345 ORTHO05D004682 1.5e-07 60.1 115 36.5
TAR623G1626 Trochodendron aralioides HOM05D005345 ORTHO05D004682 1.5e-07 60.1 108 40.7
ATR1127G123 Amborella trichopoda HOM05D002045 ORTHO05D002014 2.6e-07 59.3 49 55.1
ECA246G3070 Erigeron canadensis HOM05D002045 ORTHO05D002014 2.6e-07 59.3 58 43.1
HanXRQChr14g0460501 Helianthus annuus HOM05D005345 ORTHO05D004682 2.6e-07 59.3 87 36.8
Oeu064002.1 Olea europaea HOM05D005345 ORTHO05D004682 2.6e-07 59.3 107 34.6
Zm00001eb015970 Zea mays HOM05D021806 ORTHO05D004682 3.4e-07 58.9 49 53.1
DCAR_018044 Daucus carota HOM05D005345 ORTHO05D004682 4.4e-07 58.5 60 41.7
Lalb_Chr10g0102841 Lupinus albus HOM05D005345 ORTHO05D004682 4.4e-07 58.5 84 40.5
Psat5g069400 Pisum sativum HOM05D005345 ORTHO05D004682 4.4e-07 58.5 77 45.5
PGR142G1797 Punica granatum HOM05D005345 ORTHO05D004682 4.4e-07 58.5 51 49.0
DCAR_009470 Daucus carota HOM05D005345 ORTHO05D004682 5.8e-07 58.2 68 36.8
Lalb_Chr08g0239261 Lupinus albus HOM05D005345 ORTHO05D004682 5.8e-07 58.2 63 44.4
HanXRQChr07g0204951 Helianthus annuus HOM05D005345 ORTHO05D004682 7.6e-07 57.8 95 34.7
Sc01g0002940 Simmondsia chinensis HOM05D002045 ORTHO05D002014 7.6e-07 57.8 105 35.2
vmacro22514 Vaccinium macrocarpon HOM05D002045 ORTHO05D002014 7.6e-07 57.8 42 59.5
EL10Ac5g10466 Beta vulgaris HOM05D005345 ORTHO05D004682 9.9e-07 57.4 95 34.7
BcaB01g05942 Brassica carinata HOM05D010812 ORTHO05D004682 9.9e-07 57.4 62 45.2
C03p02570 Brassica napus HOM05D010812 ORTHO05D004682 9.9e-07 57.4 62 45.2
BolC3t12809H Brassica oleracea HOM05D010812 ORTHO05D004682 9.9e-07 57.4 62 45.2
CiPaw.11G123700 Carya illinoinensis HOM05D002045 ORTHO05D002014 1.3e-06 57.0 39 61.5
Lsat_1_v5_gn_3_10180 Lactuca sativa HOM05D002045 ORTHO05D002014 1.3e-06 57.0 62 41.9
Manes.01G248100 Manihot esculenta HOM05D002045 ORTHO05D002014 1.3e-06 57.0 52 51.9
Actinidia13637 Actinidia chinensis HOM05D005345 ORTHO05D004682 1.7e-06 56.6 113 33.6
MSTRG.13878 Avicennia marina HOM05D002045 ORTHO05D002014 1.7e-06 56.6 39 59.0
Haze_08656 Corylus avellana HOM05D002045 ORTHO05D002014 1.7e-06 56.6 39 61.5
Duzib128G0800 Durio zibethinus HOM05D005345 ORTHO05D004682 1.7e-06 56.6 105 39.0
Nn5g26827 Nelumbo nucifera HOM05D005345 ORTHO05D004682 1.7e-06 56.6 110 38.2
PSO135G1064 Papaver somniferum HOM05D002045 ORTHO05D002014 1.7e-06 56.6 82 35.4
Medtr3g093780 Medicago truncatula HOM05D005345 ORTHO05D004682 2.2e-06 56.2 108 35.2
Peaxi162Scf00073g00227 Petunia axillaris HOM05D005345 ORTHO05D004682 2.2e-06 56.2 119 33.6
Ca_23243_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 2.9e-06 55.8 67 44.8
Duzib133G0749 Durio zibethinus HOM05D002045 ORTHO05D002014 2.9e-06 55.8 60 45.0
Thhalv10013098m.g Eutrema salsugineum HOM05D010812 ORTHO05D004682 2.9e-06 55.8 111 34.2
PSO063G1517 Papaver somniferum HOM05D002045 ORTHO05D002014 2.9e-06 55.8 36 61.1
Potri.003G137700 Populus trichocarpa HOM05D002045 ORTHO05D002014 2.9e-06 55.8 64 45.3
Hund27218 Selenicereus undatus HOM05D002045 ORTHO05D002014 2.9e-06 55.8 60 46.7
Dinv38855 Davidia involucrata HOM05D002045 ORTHO05D002014 3.8e-06 55.5 36 63.9
ECA238G0953 Erigeron canadensis HOM05D005345 ORTHO05D004682 3.8e-06 55.5 37 64.9
SGA_v2.0_scaffold144G35851 Striga asiatica HOM05D002045 ORTHO05D002014 3.8e-06 55.5 38 60.5
BcaB01g05719 Brassica carinata HOM05D010812 ORTHO05D004682 4.9e-06 55.1 62 43.5
CDE04G3612 Ceratophyllum demersum HOM05D025459 ORTHO05D004682 4.9e-06 55.1 77 41.6
Migut.E01238 Erythranthe guttata HOM05D002045 ORTHO05D002014 4.9e-06 55.1 36 61.1
Sabra03G0099100 Salix brachista HOM05D002045 ORTHO05D002014 4.9e-06 55.1 42 54.8
SEGI_27923 Sequoiadendron giganteum HOM05D002045 ORTHO05D002014 4.9e-06 55.1 62 45.2
AL5G44070 Arabidopsis lyrata HOM05D002045 ORTHO05D002014 6.4e-06 54.7 90 38.9
Gohir.A13G007900 Gossypium hirsutum HOM05D005345 ORTHO05D004682 6.4e-06 54.7 108 39.8
Manes.02G012300 Manihot esculenta HOM05D002045 ORTHO05D002014 6.4e-06 54.7 103 35.9
PSO384G3902 Papaver somniferum HOM05D002045 ORTHO05D002014 6.4e-06 54.7 111 34.2
Potri.014G095700 Populus trichocarpa HOM05D002045 ORTHO05D002014 6.4e-06 54.7 39 59.0
Thecc.01G346100 Theobroma cacao HOM05D002045 ORTHO05D002014 6.4e-06 54.7 39 61.5
TPR.G13957 Trifolium pratense HOM05D005345 ORTHO05D004682 6.4e-06 54.7 110 34.5
CAN.G532.98 Capsicum annuum HOM05D002045 ORTHO05D002014 8.4e-06 54.3 41 56.1
PSO017G5511 Papaver somniferum HOM05D002045 ORTHO05D002014 8.4e-06 54.3 36 58.3
QL04p056206 Quercus lobata HOM05D002045 ORTHO05D002014 8.4e-06 54.3 70 41.4


User provided reference genes

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