Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1143800 Malus domestica HOM05D002601 ORTHO05D002884 3.5e-27 124.4 71 100.0
MD05G1002600 Malus domestica HOM05D002601 ORTHO05D002884 7.5e-22 106.7 72 77.8
RcHm_v2.0_Chr2g0125161 Rosa chinensis HOM05D002601 ORTHO05D002884 7.8e-19 96.7 72 69.4
FAN05G1271 Fragaria x ananassa HOM05D002601 ORTHO05D002884 9.5e-17 89.7 72 65.3
FvH4_6g25260 Fragaria vesca HOM05D002601 ORTHO05D002884 2.1e-16 88.6 72 63.9
FAN09G3341 Fragaria x ananassa HOM05D002601 ORTHO05D002884 2.8e-16 88.2 72 63.9
Prupe.7G036500 Prunus persica HOM05D002601 ORTHO05D002884 4.7e-16 87.4 72 65.3
Thecc.01G323900 Theobroma cacao HOM05D002601 ORTHO05D002884 2.3e-15 85.1 72 59.7
Sed0003280 Sechium edule HOM05D002601 ORTHO05D002884 3.1e-15 84.7 72 62.5
CiPaw.07G124400 Carya illinoinensis HOM05D002601 ORTHO05D002884 5.2e-15 84.0 72 62.5
Haze_05132 Corylus avellana HOM05D002601 ORTHO05D002884 5.2e-15 84.0 72 62.5
Aa31LG1G28380 Aethionema arabicum HOM05D002601 ORTHO05D002884 6.8e-15 83.6 72 59.7
Hma1.2p1_0017F.1_g011560 Hydrangea macrophylla HOM05D002601 ORTHO05D002884 6.8e-15 83.6 72 62.5
QL12p034519 Quercus lobata HOM05D002601 ORTHO05D002884 8.9e-15 83.2 72 61.1
Aqoxy2G02514 Aquilegia oxysepala HOM05D002601 ORTHO05D002884 1.2e-14 82.8 72 58.3
Cfa004893 Carpinus fangiana HOM05D002601 ORTHO05D002884 1.5e-14 82.4 72 59.7
A05p00780 Brassica napus HOM05D002601 ORTHO05D002884 2.0e-14 82.0 72 58.3
BraA05t19081Z Brassica rapa HOM05D002601 ORTHO05D002884 2.0e-14 82.0 72 58.3
Atru.chr5.881 Acer truncatum HOM05D002601 ORTHO05D002884 2.6e-14 81.6 72 61.1
Carub.0004s2976 Capsella rubella HOM05D002601 ORTHO05D002884 2.6e-14 81.6 72 58.3
ClCG11G013230 Citrullus lanatus HOM05D002601 ORTHO05D002884 2.6e-14 81.6 72 58.3
Eucgr.K00577 Eucalyptus grandis HOM05D002601 ORTHO05D002884 2.6e-14 81.6 72 58.3
Sp4g29020 Schrenkiella parvula HOM05D002601 ORTHO05D002884 2.6e-14 81.6 72 58.3
CANSAT25G2156 Cannabis sativa HOM05D002601 ORTHO05D002884 3.4e-14 81.3 72 59.7
Dinv26832 Davidia involucrata HOM05D002601 ORTHO05D002884 3.4e-14 81.3 72 61.1
arahy.Tifrunner.gnm1.ann1.5MFX44 Arachis hypogaea HOM05D002601 ORTHO05D002884 4.4e-14 80.9 72 58.3
arahy.Tifrunner.gnm1.ann1.ZJVA8M Arachis hypogaea HOM05D002601 ORTHO05D002884 4.4e-14 80.9 72 58.3
Ca_09242_v3 Cicer arietinum L. HOM05D002601 ORTHO05D002884 4.4e-14 80.9 72 58.3
Medtr7g110570 Medicago truncatula HOM05D002601 ORTHO05D002884 4.4e-14 80.9 72 58.3
THA.LOC104802120 Tarenaya hassleriana HOM05D002601 ORTHO05D002884 4.4e-14 80.9 72 56.9
C04p00940 Brassica napus HOM05D002601 ORTHO05D002884 5.8e-14 80.5 72 56.9
BolC4t21732H Brassica oleracea HOM05D002601 ORTHO05D002884 5.8e-14 80.5 72 56.9
Lj1A9T42 Lonicera japonica HOM05D002601 ORTHO05D002884 5.8e-14 80.5 72 62.5
Manes.05G010000 Manihot esculenta HOM05D002601 ORTHO05D002884 5.8e-14 80.5 72 58.3
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 7.5e-14 80.1 72 58.3
MELO3C011817.2 Cucumis melo HOM05D002601 ORTHO05D002884 7.5e-14 80.1 73 56.2
Lalb_Chr18g0046441 Lupinus albus HOM05D002601 ORTHO05D002884 7.5e-14 80.1 72 55.6
AT2G47020 Arabidopsis thaliana HOM05D002601 ORTHO05D002884 9.9e-14 79.7 72 56.9
AL4G46510 Arabidopsis lyrata HOM05D002601 ORTHO05D002884 1.3e-13 79.3 71 57.7
HanXRQChr06g0167981 Helianthus annuus HOM05D002601 ORTHO05D002884 1.3e-13 79.3 72 58.3
VMungo1383G1635 Vigna mungo HOM05D002601 ORTHO05D002884 1.3e-13 79.3 72 58.3
CsaV3_5G029740 Cucumis sativus L. HOM05D002601 ORTHO05D002884 1.7e-13 79.0 72 55.6
Duzib138G1823 Durio zibethinus HOM05D002601 ORTHO05D002884 1.7e-13 79.0 72 56.9
Gohir.A11G103900 Gossypium hirsutum HOM05D002601 ORTHO05D002884 1.7e-13 79.0 72 55.6
Gorai.007G116300 Gossypium raimondii HOM05D002601 ORTHO05D002884 1.7e-13 79.0 72 55.6
Phvul.001G217500 Phaseolus vulgaris HOM05D002601 ORTHO05D002884 1.7e-13 79.0 72 58.3
PGR142G1756 Punica granatum HOM05D002601 ORTHO05D002884 2.2e-13 78.6 72 56.9
Ciclev10020151m.g Citrus clementina HOM05D002601 ORTHO05D002884 3.7e-13 77.8 72 58.3
COL.COLO4_23144 Corchorus olitorius HOM05D002601 ORTHO05D002884 3.7e-13 77.8 72 54.2
MBI19_g32739_MAGBIO Magnolia biondii HOM05D002601 ORTHO05D002884 3.7e-13 77.8 72 56.9
MBI19_g48072_MAGBIO Magnolia biondii HOM05D002601 ORTHO05D002884 3.7e-13 77.8 72 56.9
Thhalv10001468m.g Eutrema salsugineum HOM05D002601 ORTHO05D002884 4.9e-13 77.4 72 56.9
Glyma.03G223500 Glycine max HOM05D002601 ORTHO05D002884 4.9e-13 77.4 72 55.6
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 6.4e-13 77.0 72 55.6
ATR0796G161 Amborella trichopoda HOM05D002601 ORTHO05D002884 8.3e-13 76.6 72 54.2
Gohir.D11G108700 Gossypium hirsutum HOM05D002601 ORTHO05D002884 8.3e-13 76.6 72 54.2
vmacro01416 Vaccinium macrocarpon HOM05D002601 ORTHO05D002884 8.3e-13 76.6 72 56.9
GSVIVG01028263001 Vitis vinifera HOM05D002601 ORTHO05D002884 8.3e-13 76.6 72 56.9
Psat3g017240 Pisum sativum HOM05D002601 ORTHO05D002884 1.1e-12 76.3 72 54.2
Potri.014G114000 Populus trichocarpa HOM05D002601 ORTHO05D002884 1.1e-12 76.3 72 55.6
Actinidia31995 Actinidia chinensis HOM05D002601 ORTHO05D002884 1.4e-12 75.9 71 59.2
AUR62011696 Chenopodium quinoa HOM05D002601 ORTHO05D002884 1.4e-12 75.9 73 56.2
Rhsim12G0087500 Rhododendron simsii HOM05D002601 ORTHO05D002884 1.4e-12 75.9 72 56.9
Sabra14G0084100 Salix brachista HOM05D002601 ORTHO05D002884 1.4e-12 75.9 72 55.6
Cfa004894 Carpinus fangiana HOM05D002601 ORTHO05D002884 1.9e-12 75.5 72 55.6
TWI59G0984 Tripterygium wilfordii HOM05D002601 ORTHO05D002884 1.9e-12 75.5 72 52.8
EL10As5g23616 Beta vulgaris HOM05D002601 ORTHO05D002884 2.4e-12 75.1 72 55.6
Nn3g21920 Nelumbo nucifera HOM05D002601 ORTHO05D002884 2.4e-12 75.1 72 55.6
DCAR_018245 Daucus carota HOM05D002601 ORTHO05D002884 3.2e-12 74.7 72 55.6
Oeu038072.1 Olea europaea HOM05D002601 ORTHO05D002884 4.1e-12 74.3 72 55.6
Ah.11g045880 Amaranthus hybridus HOM05D002601 ORTHO05D002884 5.4e-12 73.9 72 56.9
Lsat_1_v5_gn_8_167200 Lactuca sativa HOM05D002601 ORTHO05D002884 5.4e-12 73.9 72 55.6
Cpa.g.sc41.90 Carica papaya HOM05D002601 ORTHO05D002884 9.2e-12 73.2 72 55.6
PSO170G2438 Papaver somniferum HOM05D002601 ORTHO05D002884 1.2e-11 72.8 72 51.4
PSO357G0226 Papaver somniferum HOM05D002601 ORTHO05D002884 1.2e-11 72.8 72 51.4
Sc05g0000100 Simmondsia chinensis HOM05D002601 ORTHO05D002884 1.2e-11 72.8 72 52.8
Potri.002G188200 Populus trichocarpa HOM05D002601 ORTHO05D002884 2.7e-11 71.6 70 57.1
SalBow2G3536 Salvia bowleyana HOM05D002601 ORTHO05D002884 2.7e-11 71.6 72 54.2
SGA_v2.0_scaffold58G20339 Striga asiatica HOM05D002601 ORTHO05D002884 2.7e-11 71.6 72 54.2
TPR.G2425 Trifolium pratense HOM05D002601 ORTHO05D002884 2.7e-11 71.6 67 56.7
Glyma.19G220702 Glycine max HOM05D002601 ORTHO05D002884 3.5e-11 71.2 70 52.9
Peaxi162Scf00116g01410 Petunia axillaris HOM05D002601 ORTHO05D002884 3.5e-11 71.2 72 54.2
Migut.N00922 Erythranthe guttata HOM05D002601 ORTHO05D002884 6.0e-11 70.5 72 52.8
CSS0029568 Camellia sinensis var. sinensis HOM05D002601 ORTHO05D002884 7.8e-11 70.1 71 56.3
Migut.O00616 Erythranthe guttata HOM05D002601 ORTHO05D002884 7.8e-11 70.1 72 51.4
arahy.Tifrunner.gnm1.ann1.C6NCIG Arachis hypogaea HOM05D002601 ORTHO05D002884 1.3e-10 69.3 63 57.1
TAR365G0121 Trochodendron aralioides HOM05D002601 ORTHO05D002884 1.7e-10 68.9 63 57.1
CSS0028996 Camellia sinensis var. sinensis HOM05D002601 ORTHO05D002884 2.3e-10 68.6 71 54.9
HPP92_021932 Vanilla planifolia HOM05D002601 ORTHO05D002884 2.3e-10 68.6 72 50.0
arahy.Tifrunner.gnm1.ann1.69M8FP Arachis hypogaea HOM05D002601 ORTHO05D002884 3.0e-10 68.2 69 50.7
arahy.Tifrunner.gnm1.ann1.MD0I2C Arachis hypogaea HOM05D002601 ORTHO05D002884 3.0e-10 68.2 69 50.7
Nitab4.5_0000338g0140 Nicotiana tabacum HOM05D002601 ORTHO05D002884 3.0e-10 68.2 72 52.8
Nitab4.5_0004137g0010 Nicotiana tabacum HOM05D002601 ORTHO05D002884 3.0e-10 68.2 72 52.8
AUR62024555 Chenopodium quinoa HOM05D002601 ORTHO05D002884 5.1e-10 67.4 96 42.7
Cc10_g11970 Coffea canephora HOM05D002601 ORTHO05D002884 6.6e-10 67.0 72 48.6
Solyc03g078020.4 Solanum lycopersicum HOM05D002601 ORTHO05D002884 8.6e-10 66.6 72 51.4
Sopen03g020430 Solanum pennellii HOM05D002601 ORTHO05D002884 8.6e-10 66.6 72 51.4
MBI19_g47478_MAGBIO Magnolia biondii HOM05D002601 ORTHO05D002884 2.5e-09 65.1 67 53.7
CAN.G173.3 Capsicum annuum HOM05D002601 ORTHO05D002884 5.6e-09 63.9 72 50.0
SEGI_40420 Sequoiadendron giganteum HOM05D002601 ORTHO05D002884 7.3e-09 63.5 71 47.9
Zm00001eb417430 Zea mays HOM05D002601 ORTHO05D002884 1.2e-08 62.8 72 45.8
Zm00001eb417410 Zea mays HOM05D002601 ORTHO05D002884 1.6e-08 62.4 72 45.8
arahy.Tifrunner.gnm1.ann1.3UK522 Arachis hypogaea HOM05D002601 ORTHO05D002884 3.6e-08 61.2 71 49.3
unitig_22.g5838 Utricularia gibba HOM05D002601 ORTHO05D002884 6.2e-08 60.5 67 47.8


User provided reference genes

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