Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 2.2e-185 652.1 327 100.0
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 2.1e-175 619.0 327 94.5
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 1.5e-173 612.8 327 93.0
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.6e-159 566.2 328 83.2
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 4.7e-159 564.7 328 83.2
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.7e-159 564.7 328 83.2
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 1.5e-157 559.7 327 83.5
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 6.5e-145 517.7 327 79.2
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 4.2e-144 515.0 327 78.6
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 7.2e-144 514.2 328 79.3
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 7.2e-144 514.2 326 77.6
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 3.6e-143 511.9 326 78.2
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 2.0e-141 506.1 326 76.7
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 3.3e-141 505.4 323 76.2
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.1e-139 500.4 329 77.8
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.7e-138 495.7 328 73.8
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 1.3e-137 493.4 330 75.2
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 5.0e-137 491.5 334 74.3
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.5e-136 490.0 324 75.0
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 1.9e-136 489.6 327 73.1
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.5e-136 489.2 324 74.4
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 3.2e-136 488.8 324 74.4
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 5.5e-136 488.0 328 74.7
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.4e-136 487.3 323 71.5
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.7e-135 485.7 323 71.5
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 6.1e-135 484.6 324 72.5
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 6.1e-135 484.6 324 73.5
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 8.0e-135 484.2 323 73.7
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 8.0e-135 484.2 327 72.2
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.0e-134 482.3 323 70.9
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 5.2e-134 481.5 330 73.3
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 5.2e-134 481.5 326 73.0
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 6.8e-134 481.1 323 72.1
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 6.8e-134 481.1 327 70.6
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 2.6e-133 479.2 321 74.5
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 2.6e-133 479.2 327 70.9
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 4.4e-133 478.4 324 70.1
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 7.5e-133 477.6 329 72.3
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 9.8e-133 477.2 324 73.5
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.3e-132 476.9 324 71.9
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.7e-132 476.5 320 72.8
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 1.7e-132 476.5 326 72.7
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 2.8e-132 475.7 322 73.6
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 4.8e-132 474.9 324 69.4
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 1.1e-131 473.8 331 71.0
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.4e-131 473.4 328 72.6
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 1.8e-131 473.0 329 71.7
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 3.1e-131 472.2 327 69.1
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 5.4e-131 471.5 327 69.7
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 2.0e-130 469.5 329 71.1
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 2.0e-130 469.5 324 71.6
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.7e-130 469.2 331 71.0
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 7.7e-130 467.6 325 70.2
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 7.7e-130 467.6 327 69.1
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 2.3e-129 466.1 320 70.9
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 6.6e-129 464.5 329 70.2
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 8.6e-129 464.2 331 69.5
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 1.9e-128 463.0 331 69.5
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.5e-128 462.6 331 70.7
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 4.2e-128 461.8 323 70.6
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 5.5e-128 461.5 321 69.2
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 7.2e-128 461.1 332 70.2
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.8e-126 456.4 323 68.4
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 3.0e-126 455.7 320 68.4
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 8.9e-126 454.1 325 69.8
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 4.4e-125 451.8 329 69.0
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 7.5e-125 451.1 318 71.1
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 9.8e-125 450.7 309 68.3
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 9.8e-125 450.7 329 69.0
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.9e-124 448.4 323 66.9
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 2.4e-123 446.0 324 67.9
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.4e-123 446.0 328 69.8
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 3.2e-123 445.7 325 69.2
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 3.2e-123 445.7 371 62.5
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 4.1e-123 445.3 323 67.8
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.1e-123 445.3 323 70.3
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.4e-123 444.9 323 70.0
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 7.0e-123 444.5 326 68.1
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 9.2e-123 444.1 329 70.2
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 1.2e-122 443.7 323 67.8
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 3.5e-122 442.2 324 67.3
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 2.5e-120 436.0 327 67.0
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 3.3e-120 435.6 326 66.9
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 4.3e-120 435.3 329 66.9
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 9.5e-120 434.1 327 66.1
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.6e-119 433.3 327 68.5
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 3.6e-119 432.2 327 66.1
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 8.0e-119 431.0 279 76.7
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.0e-118 430.6 325 66.2
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 6.8e-118 427.9 327 63.9
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 2.0e-117 426.4 327 64.2
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 3.4e-117 425.6 327 63.9
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 5.8e-117 424.9 327 64.5
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 2.2e-116 422.9 325 63.4
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 2.2e-116 422.9 264 79.5
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 2.2e-116 422.9 327 65.4
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 2.9e-116 422.5 325 63.4
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 3.7e-116 422.2 307 67.1
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 9.2e-115 417.5 320 65.6
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 2.0e-114 416.4 322 65.8
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 2.0e-114 416.4 332 65.1
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.7e-114 416.0 305 66.6
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 3.0e-113 412.5 326 63.5
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 8.6e-113 411.0 326 62.9
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 4.3e-112 408.7 327 63.6
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 1.6e-111 406.8 326 62.6
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 6.8e-110 401.4 418 54.3
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 6.8e-110 401.4 325 62.5
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 1.7e-108 396.7 294 67.7
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.2e-108 396.4 290 67.9
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 9.2e-107 391.0 256 77.3
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.5e-104 383.6 376 55.3
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 2.1e-103 379.8 325 57.8
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 6.8e-102 374.8 326 58.3
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 6.4e-100 368.2 289 61.9
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.4e-100 368.2 323 58.8
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 1.6e-98 363.6 547 40.8
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.8e-95 352.8 327 58.1
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 3.4e-93 345.9 685 35.8
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 1.4e-91 340.5 263 60.5
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 2.7e-90 336.3 272 63.2
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 8.7e-89 331.3 220 70.9
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.4e-83 313.9 310 52.6
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 4.6e-82 308.9 313 50.8
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 7.8e-82 308.1 313 50.5
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 7.3e-80 301.6 230 66.5
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.6e-79 300.4 258 60.9
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.6e-77 293.1 204 72.5
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.1e-75 287.7 308 48.4
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 4.5e-69 265.8 177 74.0
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 5.8e-69 265.4 223 60.1
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 7.9e-58 228.4 305 41.6
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 2.2e-44 183.7 196 45.9
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 8.2e-39 165.2 96 81.2
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 1.5e-37 161.0 96 81.2
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 8.0e-34 148.7 96 78.1
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 7.0e-30 135.6 86 79.1
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.2e-27 125.6 93 61.3
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.1e-26 124.0 93 61.3
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.1e-26 124.0 75 73.3
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 2.1e-26 124.0 123 54.5
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 6.1e-26 122.5 327 28.7
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 1.3e-20 104.8 84 61.9
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.0e-17 93.6 80 53.8
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 2.8e-15 87.0 60 70.0
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 1.5e-11 74.7 54 66.7
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 1.5e-11 74.7 54 66.7
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.9e-11 74.3 54 66.7
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 2.1e-10 70.9 50 66.0
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.3e-09 67.4 43 74.4
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 3.0e-09 67.0 53 67.9
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 4.0e-09 66.6 56 55.4
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 2.4e-06 57.4 29 86.2
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 2.4e-06 57.4 29 86.2
BcaC04g19837 Brassica carinata HOM05D004699 ORTHO05D092684 9.2e-06 55.5 34 79.4


User provided reference genes

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