Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 8.9e-244 846.7 473 100.0
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 8.4e-202 707.2 466 88.0
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 6.7e-183 644.4 468 82.7
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.9e-177 626.3 467 79.2
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.2e-177 625.2 467 78.8
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 2.7e-176 622.5 467 78.6
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 9.7e-174 614.0 467 78.4
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 6.1e-168 594.7 467 76.0
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 6.5e-162 574.7 467 73.2
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 3.1e-156 555.8 470 72.1
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 2.6e-155 552.7 463 71.9
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 2.9e-154 549.3 465 71.4
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.5e-153 547.0 463 72.6
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 1.0e-151 540.8 492 68.7
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 8.0e-144 514.6 464 68.1
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.4e-143 513.8 464 68.1
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 2.6e-142 509.6 467 67.2
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 5.7e-142 508.4 485 66.0
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.8e-141 506.1 464 66.6
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 5.4e-140 501.9 463 67.0
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.3e-138 496.5 465 66.5
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 2.9e-138 496.1 467 65.7
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 4.2e-137 492.3 465 65.6
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 8.0e-136 488.0 465 65.4
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 5.2e-135 485.3 467 64.7
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 4.4e-134 482.3 464 66.4
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 1.6e-131 473.8 464 63.4
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 2.0e-131 473.4 473 64.3
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 3.5e-131 472.6 463 63.3
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 9.5e-129 464.5 468 62.6
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.1e-128 463.4 455 64.4
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 5.2e-127 458.8 462 62.1
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 3.4e-126 456.1 476 60.3
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 7.5e-126 454.9 467 61.9
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 9.8e-126 454.5 464 62.9
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 3.7e-125 452.6 465 61.7
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.6e-123 447.2 469 61.6
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 2.7e-123 446.4 468 60.3
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 3.5e-123 446.0 511 57.3
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 7.8e-123 444.9 469 61.0
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.7e-122 443.7 468 61.5
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 3.0e-122 443.0 470 59.8
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 1.1e-121 441.0 480 59.6
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.1e-121 441.0 435 63.7
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 5.6e-121 438.7 457 62.8
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 6.2e-120 435.3 469 60.3
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 6.2e-120 435.3 465 61.7
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 2.3e-119 433.3 351 74.4
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 6.8e-119 431.8 461 60.7
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 8.9e-119 431.4 471 59.9
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 6.4e-117 425.2 467 59.5
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 1.4e-116 424.1 462 60.0
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 3.2e-116 422.9 470 58.1
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.6e-115 420.6 455 60.4
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 2.1e-115 420.2 468 59.2
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 2.7e-115 419.9 474 58.0
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 2.7e-115 419.9 655 47.9
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 4.6e-115 419.1 470 58.3
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 7.8e-115 418.3 464 59.5
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 7.8e-115 418.3 338 73.4
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 1.7e-114 417.2 316 76.6
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 2.3e-114 416.8 470 59.1
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 6.6e-114 415.2 461 58.6
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 1.1e-113 414.5 470 58.5
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 3.6e-112 409.5 464 59.1
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 3.6e-112 409.5 467 58.9
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 8.1e-112 408.3 464 58.4
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 1.1e-111 407.9 470 56.6
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 6.8e-111 405.2 469 56.1
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 1.2e-110 404.4 466 57.5
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 5.8e-110 402.1 521 53.2
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 3.2e-108 396.4 457 56.5
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 7.1e-108 395.2 463 55.5
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 2.7e-107 393.3 459 56.6
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 3.5e-107 392.9 458 56.8
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 3.3e-105 386.3 273 79.1
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 4.3e-105 386.0 464 56.7
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 7.3e-105 385.2 390 63.3
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 6.8e-103 378.6 463 54.9
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 1.2e-102 377.9 457 54.7
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 6.4e-101 372.1 465 53.3
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.4e-100 370.9 464 54.3
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 2.4e-100 370.2 466 53.9
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 1.3e-98 364.4 469 53.7
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 4.3e-97 359.4 474 53.4
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 7.3e-97 358.6 463 52.7
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 3.6e-96 356.3 454 54.2
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 4.7e-96 355.9 455 53.4
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 5.2e-95 352.4 520 48.8
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 1.7e-93 347.4 461 51.8
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 4.2e-92 342.8 462 51.7
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 1.1e-89 334.7 469 47.5
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 9.6e-89 331.6 463 52.5
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 7.6e-86 322.0 453 49.7
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 1.3e-80 304.7 460 45.2
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.1e-79 301.6 461 49.2
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 5.3e-79 299.3 247 72.9
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 9.0e-79 298.5 468 47.6
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 1.2e-78 298.1 467 47.3
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 3.4e-78 296.6 469 47.1
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 2.4e-76 290.4 299 62.9
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 2.3e-74 283.9 370 51.4
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 1.6e-72 277.7 457 46.6
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 3.4e-70 270.0 297 54.2
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 1.0e-66 258.5 232 66.4
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 5.0e-61 239.6 251 54.6
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 1.4e-55 221.5 492 41.7
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 4.1e-55 219.9 309 51.1
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 7.9e-51 205.7 497 38.4
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 1.8e-50 204.5 329 42.9
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 1.2e-43 181.8 506 35.0
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 6.7e-34 149.4 171 59.6
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 5.7e-33 146.4 498 31.7
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 2.4e-31 141.0 88 87.5
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 2.9e-29 134.0 288 38.9
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 1.2e-25 122.1 385 32.2
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 2.0e-25 121.3 96 69.8
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 2.0e-25 121.3 96 69.8
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 8.3e-24 115.9 99 68.7
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 8.3e-24 115.9 99 68.7
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 5.9e-22 109.8 190 45.8
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 1.2e-19 102.1 164 47.0
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 3.6e-19 100.5 153 48.4
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.0e-17 94.7 165 38.8
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 2.2e-16 91.3 86 61.6
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 3.7e-16 90.5 196 40.3
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 2.3e-13 81.3 298 30.9
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 7.3e-12 76.3 244 31.6
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 2.8e-11 74.3 50 74.0
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 2.4e-07 61.2 119 44.5


User provided reference genes

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