Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 2045.0 1065 100.0
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1909.0 1068 93.2
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1856.6 1023 94.7
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1835.1 1069 88.7
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1822.4 1067 87.9
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1793.5 1067 86.8
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1784.2 1067 86.5
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1726.8 1074 83.9
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1726.8 1077 83.0
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1719.5 1087 82.7
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1705.3 1080 81.9
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1704.9 1075 83.0
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1701.8 1077 82.2
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1696.4 1075 82.6
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1689.9 1072 82.2
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1686.4 1076 81.6
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1682.9 1067 81.3
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1679.8 1070 82.1
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1668.3 1073 80.7
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1666.7 1079 80.9
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1664.0 1072 80.9
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1662.5 1072 81.1
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1647.1 1072 80.2
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1646.3 1084 79.8
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1645.2 1079 79.2
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1644.8 1078 80.1
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1644.0 1073 80.5
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1641.7 1079 78.8
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1639.0 1039 81.7
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1637.1 1067 80.2
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1635.9 1075 80.4
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1635.9 1072 79.9
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1630.2 1066 80.6
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1626.7 1074 80.1
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1625.5 1074 78.8
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1619.8 1072 79.1
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1619.0 1071 78.2
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1612.8 1080 77.8
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1600.5 1080 77.5
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1595.1 1074 77.4
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1594.3 1071 78.4
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1592.4 1076 77.0
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1589.7 1065 79.8
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1587.8 1071 78.2
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1580.8 1075 76.4
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1580.1 1097 77.1
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1578.9 1071 77.8
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1573.1 1070 77.4
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1572.8 1075 76.2
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1560.8 1070 76.4
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1560.4 1083 76.4
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1560.0 1158 73.2
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1549.6 1077 74.9
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1538.5 1070 75.4
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1537.7 1092 74.5
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1535.0 1070 74.9
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1526.9 1070 74.8
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1526.1 1111 74.0
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1521.9 1081 75.2
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1517.3 1070 74.2
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1517.3 1068 76.2
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1513.4 1086 73.7
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1511.1 1086 73.5
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1506.1 1070 73.8
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1505.0 1090 73.0
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1504.6 1071 73.9
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1498.0 1075 73.3
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1497.6 988 79.7
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1496.5 1056 75.9
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1486.9 1105 71.9
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1483.8 1071 72.7
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1482.6 1105 71.3
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1481.1 1090 72.2
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1476.5 1067 73.0
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1474.1 1149 71.5
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1466.1 1058 73.1
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1465.7 1052 75.5
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1460.3 1137 71.2
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1459.1 1064 72.6
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1457.2 1090 71.2
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1452.2 1090 71.5
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1452.2 1000 77.1
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1448.7 1067 72.3
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1441.4 1070 71.5
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1439.9 1070 70.8
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1437.2 1176 68.5
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1436.8 1074 70.9
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1432.5 1090 70.9
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1431.8 1068 71.0
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1424.1 946 77.9
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1421.0 1069 70.6
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1399.0 1040 72.0
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1394.4 1090 70.3
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1380.9 1113 68.8
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1359.0 1069 68.8
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1347.0 1099 65.4
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1341.6 1069 65.4
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1323.9 1175 65.2
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1321.6 1020 69.4
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1319.7 1069 65.1
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1307.4 1069 64.9
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1288.9 1059 68.2
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1275.0 1263 59.1
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1269.6 875 76.2
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1216.8 1069 62.9
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1197.6 738 84.6
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1169.5 905 68.5
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1159.4 909 69.9
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 7.2e-310 1067.4 970 62.9
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 9.4e-310 1067.0 724 78.5
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 2.0e-296 1022.7 1086 52.3
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.0e-296 1022.7 1096 52.3
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 8.3e-290 1000.7 631 82.9
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 4.9e-282 974.9 821 66.6
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.5e-272 942.2 1085 49.8
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.9e-258 896.0 776 65.7
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.2e-257 892.5 1077 47.4
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 2.8e-245 852.8 1057 46.7
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 4.5e-227 792.3 515 78.4
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 2.3e-223 780.0 559 74.1
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 3.3e-222 776.2 567 74.8
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 2.9e-218 763.1 580 72.9
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 4.1e-212 742.7 707 59.3
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 1.0e-207 728.0 566 70.7
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 2.5e-206 723.4 533 73.5
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 7.2e-193 678.7 843 50.9
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 2.3e-191 673.7 803 49.2
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 2.3e-183 647.1 1230 36.1
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 2.5e-177 627.1 428 75.9
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 2.1e-160 570.9 429 72.3
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.0e-154 552.0 374 79.1
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 7.3e-145 519.2 348 77.6
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 9.9e-142 508.8 393 67.7
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 2.9e-133 480.7 359 72.4
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 1.7e-130 471.5 320 79.1
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 3.1e-127 460.7 347 75.5
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 4.0e-127 460.3 366 69.4
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 8.4e-117 426.0 270 83.3
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 7.1e-116 422.9 282 77.7
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 4.2e-92 344.0 228 78.5
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 3.7e-88 330.9 364 53.8
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 3.2e-76 291.2 178 82.0
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 7.2e-68 263.5 175 77.1
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 3.8e-61 241.1 162 74.7
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 9.5e-60 236.5 143 78.3
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 4.1e-55 221.1 139 78.4
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.9e-52 212.2 108 96.3
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 4.0e-50 204.5 129 80.6
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 1.6e-46 192.6 139 66.9
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 5.8e-41 174.1 118 72.9
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 1.5e-36 159.5 103 76.7
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 1.9e-36 159.1 169 55.0
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.1e-35 155.6 96 77.1
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 2.8e-35 155.2 85 84.7
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 2.3e-34 152.1 104 74.0
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 3.4e-33 148.3 111 70.3
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 2.4e-31 142.1 86 77.9
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 3.2e-31 141.7 162 55.6
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.7e-29 136.0 87 71.3
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-29 135.6 92 78.3
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 3.6e-27 128.3 203 35.5
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 3.6e-27 128.3 97 70.1
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 6.2e-27 127.5 79 74.7
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.1e-26 126.7 87 75.9
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 9.9e-25 120.2 79 67.1
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 5.1e-21 107.8 81 65.4
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 5.1e-21 107.8 100 61.0
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-20 106.7 82 69.5
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-20 106.7 82 69.5
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.6e-14 86.3 62 69.4
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.6e-14 86.3 62 69.4
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 6.0e-14 84.3 71 62.0
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.3e-13 83.2 49 81.6
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 1.1e-12 80.1 48 81.2
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 3.6e-11 75.1 54 74.1
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 2.4e-10 72.4 58 65.5
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 4.0e-10 71.6 68 58.8
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.7e-08 66.2 52 55.8


User provided reference genes

Program Settings