Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 0.0e+00 1160.6 770 100.0
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 1.2e-298 1029.6 771 81.7
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 2.2e-231 806.2 779 65.1
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 9.1e-230 800.8 789 64.1
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 1.4e-225 786.9 778 64.9
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.9e-225 785.4 778 64.9
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.2e-221 773.9 778 62.1
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.0e-220 770.8 802 63.0
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.5e-219 766.1 778 63.0
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 6.1e-218 761.5 778 62.6
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 1.4e-198 697.2 798 56.0
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 2.4e-198 696.4 798 55.8
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 4.3e-195 685.6 796 55.5
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 4.0e-193 679.1 786 56.2
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 4.4e-192 675.6 784 56.4
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 1.7e-191 673.7 794 54.2
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 6.4e-191 671.8 784 56.4
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 1.2e-189 667.5 796 56.4
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 3.5e-189 666.0 796 53.8
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 4.6e-189 665.6 790 54.3
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 5.6e-187 658.7 783 54.0
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 6.0e-181 638.6 802 54.7
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.0e-180 637.9 780 52.6
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 3.0e-180 636.3 781 52.8
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 3.1e-177 626.3 789 51.8
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 9.2e-174 614.8 787 51.3
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 1.3e-172 610.9 785 54.8
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.1e-171 607.8 790 50.6
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 7.3e-171 605.1 794 49.7
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 7.3e-171 605.1 734 58.2
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 6.8e-169 598.6 795 50.6
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 3.2e-166 589.7 827 49.0
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 9.3e-166 588.2 821 50.4
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 1.2e-165 587.8 792 48.7
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 3.0e-164 583.2 812 47.7
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 1.8e-161 573.9 808 49.0
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 4.0e-161 572.8 801 49.4
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.2e-160 571.2 784 56.2
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 2.6e-160 570.1 805 53.0
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 2.1e-157 560.5 798 48.9
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.1e-157 560.5 783 51.2
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 4.6e-157 559.3 782 50.8
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 6.0e-157 558.9 856 50.0
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 7.9e-157 558.5 801 49.1
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 7.9e-157 558.5 794 48.7
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.0e-156 558.1 814 49.4
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.3e-156 557.0 784 56.2
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 5.1e-156 555.8 797 47.9
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 8.7e-156 555.1 804 49.6
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.5e-155 554.3 770 50.3
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.3e-154 551.2 805 49.4
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 2.1e-154 550.4 799 47.7
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 2.1e-154 550.4 776 50.3
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 9.0e-153 545.0 776 50.4
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 3.4e-152 543.1 705 53.3
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 7.6e-152 542.0 791 49.6
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 3.8e-151 539.7 770 52.5
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 1.4e-150 537.7 777 53.5
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 1.9e-150 537.3 792 47.5
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 7.1e-150 535.4 787 51.7
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 7.1e-150 535.4 782 50.4
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 1.6e-149 534.3 837 45.8
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 8.7e-148 528.5 822 44.9
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 4.3e-147 526.2 776 47.4
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 7.4e-147 525.4 785 46.6
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.6e-146 524.2 942 41.7
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 1.8e-145 520.8 788 45.2
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 9.0e-145 518.5 781 49.8
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 7.6e-144 515.4 817 49.4
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.0e-143 515.0 787 48.9
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 1.0e-143 515.0 787 47.5
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 4.9e-143 512.7 799 49.3
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 1.1e-142 511.5 819 50.8
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 3.2e-142 510.0 786 48.6
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 4.2e-142 509.6 606 54.8
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.2e-141 508.1 606 54.6
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 2.1e-141 507.3 789 49.4
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 1.3e-140 504.6 813 47.4
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 2.3e-140 503.8 790 50.9
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 8.7e-140 501.9 803 51.3
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 9.6e-139 498.4 784 45.5
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.3e-138 498.0 794 48.4
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 4.8e-138 496.1 792 56.2
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 8.2e-138 495.4 791 44.8
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 3.1e-137 493.4 792 45.2
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 3.1e-137 493.4 789 47.0
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 2.6e-136 490.3 791 49.2
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 2.6e-136 490.3 791 49.2
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 2.6e-136 490.3 791 49.2
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 3.4e-136 490.0 798 46.0
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 5.9e-136 489.2 788 49.1
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 3.2e-134 483.4 790 49.1
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 7.2e-134 482.3 701 53.1
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 7.9e-133 478.8 790 48.2
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 2.3e-132 477.2 811 47.6
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 8.7e-132 475.3 807 48.2
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 1.9e-131 474.2 700 54.0
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 1.6e-130 471.1 778 48.5
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 4.8e-130 469.5 794 48.6
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 1.4e-129 468.0 780 47.4
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 2.4e-129 467.2 797 45.3
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 4.5e-128 463.0 792 45.7
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.9e-127 460.3 782 46.8
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 3.8e-127 459.9 803 47.2
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 1.4e-126 458.0 792 47.6
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.4e-126 458.0 610 54.8
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 2.5e-126 457.2 790 46.8
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 1.0e-124 451.8 789 49.4
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 3.0e-124 450.3 706 49.9
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 5.1e-124 449.5 788 46.8
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 5.1e-124 449.5 787 42.9
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.3e-122 444.9 782 47.1
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 6.9e-121 439.1 633 48.3
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 2.0e-120 437.6 785 42.0
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 2.5e-118 430.6 783 45.7
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 4.2e-118 429.9 789 47.4
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 9.4e-118 428.7 774 47.5
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 1.8e-116 424.5 784 47.6
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 5.7e-115 419.5 803 41.0
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 7.0e-113 412.5 437 58.4
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 7.7e-112 409.1 658 48.6
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 2.9e-111 407.1 809 42.2
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 7.2e-110 402.5 530 50.4
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 2.2e-106 391.0 789 43.0
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 1.2e-101 375.2 788 41.6
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 8.8e-100 369.0 730 45.3
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 7.5e-99 365.9 426 61.7
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.1e-97 362.1 774 37.3
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 2.0e-96 357.8 846 38.3
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.3e-95 355.1 759 36.9
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 2.3e-92 344.4 373 57.9
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 5.7e-91 339.7 800 36.5
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 1.0e-87 328.9 757 38.3
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 3.4e-83 313.9 694 40.2
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 1.7e-82 311.6 363 52.6
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 6.2e-77 293.1 599 38.9
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.4e-76 292.0 320 54.1
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 6.8e-68 263.1 873 30.8
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 8.1e-61 239.6 295 51.9
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 1.2e-59 235.7 293 52.6
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 1.6e-56 225.3 251 55.4
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 4.0e-52 210.7 335 43.3
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.7e-50 205.3 324 43.8
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 2.7e-48 198.0 340 40.6
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 1.7e-47 195.3 195 61.0
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 1.5e-38 165.6 220 44.1
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.3e-37 162.5 402 35.6
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 1.4e-36 159.1 175 56.6
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.4e-33 149.1 203 47.8
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 7.1e-33 146.7 183 54.1
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 7.4e-30 136.7 108 63.0
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 6.9e-28 130.2 273 39.6
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 3.8e-26 124.4 106 66.0
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 2.4e-20 105.1 86 61.6
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 2.4e-20 105.1 108 53.7
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 4.6e-16 90.9 315 28.9
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.0e-15 88.2 182 40.7
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 8.7e-15 86.7 110 52.7
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 1.5e-14 85.9 189 33.9
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 1.8e-12 79.0 275 30.5
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 2.4e-12 78.6 87 55.2
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.3e-12 77.4 66 63.6
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.2e-11 76.3 85 51.8
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 2.0e-11 75.5 203 36.5
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.3e-10 72.8 151 43.0
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 3.2e-09 68.2 192 33.3
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 5.1e-07 60.8 74 43.2
Rhsim11G0030600 Rhododendron simsii HOM05D003721 ORTHO05D004303 6.7e-07 60.5 74 44.6
arahy.Tifrunner.gnm1.ann1.B4ZXCR Arachis hypogaea HOM05D003721 ORTHO05D004303 8.8e-07 60.1 68 52.9
arahy.Tifrunner.gnm1.ann1.EAH0NM Arachis hypogaea HOM05D003721 ORTHO05D004303 7.4e-06 57.0 66 51.5


User provided reference genes

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