Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1058500 Malus domestica HOM05D003351 ORTHO05D003806 8.0e-94 347.1 171 100.0
Prupe.2G169700 Prunus persica HOM05D003351 ORTHO05D003806 1.0e-69 266.9 149 85.9
MD01G1058600 Malus domestica HOM05D003351 ORTHO05D003806 1.8e-69 266.2 149 87.9
RcHm_v2.0_Chr1g0355121 Rosa chinensis HOM05D003351 ORTHO05D003806 3.5e-65 251.9 149 82.6
FAN10G4309 Fragaria x ananassa HOM05D003351 ORTHO05D003806 6.6e-64 247.7 149 80.5
FvH4_7g14192 Fragaria vesca HOM05D003351 ORTHO05D003806 1.5e-63 246.5 149 81.2
FAN06G3044 Fragaria x ananassa HOM05D003351 ORTHO05D003806 1.5e-63 246.5 149 81.2
FAN01G2146 Fragaria x ananassa HOM05D003351 ORTHO05D003806 8.3e-59 230.7 190 64.2
FAN06G4684 Fragaria x ananassa HOM05D003351 ORTHO05D003806 1.2e-57 226.9 159 74.2
Glyma.18G232000 Glycine max HOM05D003351 ORTHO05D003806 1.0e-56 223.8 149 69.1
Glyma.09G260200 Glycine max HOM05D003351 ORTHO05D003806 1.3e-56 223.4 149 68.5
Nn6g33439 Nelumbo nucifera HOM05D003351 ORTHO05D003806 3.0e-56 222.2 149 72.5
Glyma.03G009800 Glycine max HOM05D003351 ORTHO05D003806 1.1e-55 220.3 149 71.8
Sed0024794 Sechium edule HOM05D003351 ORTHO05D003806 1.6e-54 216.5 149 66.4
Glyma.07G071300 Glycine max HOM05D003351 ORTHO05D003806 4.7e-54 214.9 149 69.1
Phvul.010G098200 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 4.7e-54 214.9 149 69.8
TWI59G0062 Tripterygium wilfordii HOM05D003351 ORTHO05D003806 6.2e-54 214.5 150 72.0
Solyc01g094550.3 Solanum lycopersicum HOM05D003351 ORTHO05D003806 1.8e-53 213.0 149 68.5
Sopen01g038360 Solanum pennellii HOM05D003351 ORTHO05D003806 1.8e-53 213.0 149 68.5
PGSC0003DMG400000166 Solanum tuberosum HOM05D003351 ORTHO05D003806 1.8e-53 213.0 149 67.1
Lj9A583T62 Lonicera japonica HOM05D003351 ORTHO05D003806 2.3e-53 212.6 160 65.0
Thecc.01G360000 Theobroma cacao HOM05D003351 ORTHO05D003806 2.3e-53 212.6 149 69.8
Dinv43809 Davidia involucrata HOM05D003351 ORTHO05D003806 3.1e-53 212.2 149 68.5
Solyc01g094530.4 Solanum lycopersicum HOM05D003351 ORTHO05D003806 3.1e-53 212.2 149 67.8
CANSAT56G4221 Cannabis sativa HOM05D003351 ORTHO05D003806 8.9e-53 210.7 149 70.5
GSVIVG01026913001 Vitis vinifera HOM05D003351 ORTHO05D003806 1.2e-52 210.3 149 69.1
Lj1g0000541 Lotus japonicus HOM05D003351 ORTHO05D003806 1.5e-52 209.9 149 67.1
Phvul.008G065700 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 2.0e-52 209.5 149 66.4
Lsat_1_v5_gn_7_4420 Lactuca sativa HOM05D003351 ORTHO05D003806 2.6e-52 209.1 147 70.7
CiPaw.01G060600 Carya illinoinensis HOM05D003351 ORTHO05D003806 3.4e-52 208.8 149 67.1
HanXRQChr04g0121471 Helianthus annuus HOM05D003351 ORTHO05D003806 3.4e-52 208.8 147 69.4
Manes.05G035200 Manihot esculenta HOM05D003351 ORTHO05D003806 4.4e-52 208.4 148 66.2
CSS0020727 Camellia sinensis var. sinensis HOM05D003351 ORTHO05D003806 5.8e-52 208.0 149 67.8
Sopen01g038340 Solanum pennellii HOM05D003351 ORTHO05D003806 5.8e-52 208.0 149 66.4
Gohir.A11G088400 Gossypium hirsutum HOM05D003351 ORTHO05D003806 7.6e-52 207.6 149 67.1
VMungo0331G1844 Vigna mungo HOM05D003351 ORTHO05D003806 7.6e-52 207.6 149 67.1
COL.COLO4_12706 Corchorus olitorius HOM05D003351 ORTHO05D003806 2.9e-51 205.7 160 63.8
DCAR_025188 Daucus carota HOM05D003351 ORTHO05D003806 2.9e-51 205.7 149 66.4
Eucgr.E00141 Eucalyptus grandis HOM05D003351 ORTHO05D003806 2.9e-51 205.7 149 65.1
Cc02_g37920 Coffea canephora HOM05D003351 ORTHO05D003806 3.7e-51 205.3 145 67.6
arahy.Tifrunner.gnm1.ann1.M409IX Arachis hypogaea HOM05D000404 ORTHO05D002003 4.9e-51 204.9 146 67.8
arahy.Tifrunner.gnm1.ann1.UANN5Y Arachis hypogaea HOM05D003351 ORTHO05D003806 6.4e-51 204.5 146 67.1
Atru.chr5.459 Acer truncatum HOM05D003351 ORTHO05D003806 8.3e-51 204.1 149 64.4
AUR62004348 Chenopodium quinoa HOM05D003351 ORTHO05D003806 8.3e-51 204.1 149 68.5
Duzib133G0362 Durio zibethinus HOM05D003351 ORTHO05D003806 8.3e-51 204.1 149 65.1
Potri.014G083300 Populus trichocarpa HOM05D003351 ORTHO05D003806 1.1e-50 203.8 149 63.8
ClCG05G001560 Citrullus lanatus HOM05D003351 ORTHO05D003806 1.4e-50 203.4 149 67.1
QL08p048955 Quercus lobata HOM05D003351 ORTHO05D003806 1.4e-50 203.4 149 65.1
Sed0019127 Sechium edule HOM05D003351 ORTHO05D003806 1.4e-50 203.4 149 61.7
Sabra14G0060600 Salix brachista HOM05D003351 ORTHO05D003806 1.9e-50 203.0 149 63.8
Gorai.007G099000 Gossypium raimondii HOM05D003351 ORTHO05D003806 2.4e-50 202.6 147 66.0
Psat4g154520 Pisum sativum HOM05D003351 ORTHO05D003806 2.4e-50 202.6 146 64.4
PSO478G5134 Papaver somniferum HOM05D003351 ORTHO05D003806 5.4e-50 201.4 149 67.1
ECA236G4888 Erigeron canadensis HOM05D003351 ORTHO05D003806 7.1e-50 201.1 147 66.7
PSO782G5283 Papaver somniferum HOM05D003351 ORTHO05D003806 7.1e-50 201.1 149 67.1
HanXRQChr06g0170081 Helianthus annuus HOM05D003351 ORTHO05D003806 9.2e-50 200.7 147 66.7
ATR0680G356 Amborella trichopoda HOM05D003351 ORTHO05D003806 1.2e-49 200.3 149 63.1
Nitab4.5_0005277g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 1.2e-49 200.3 148 66.9
Medtr7g077400 Medicago truncatula HOM05D003351 ORTHO05D003806 2.1e-49 199.5 149 65.8
Duzib138G1725 Durio zibethinus HOM05D003351 ORTHO05D003806 2.7e-49 199.1 146 65.1
Lalb_Chr19g0126951 Lupinus albus HOM05D003351 ORTHO05D003806 2.7e-49 199.1 149 62.4
Ciclev10020242m.g Citrus clementina HOM05D003351 ORTHO05D003806 4.6e-49 198.4 151 65.6
CsaV3_3G008950 Cucumis sativus L. HOM05D003351 ORTHO05D003806 4.6e-49 198.4 149 65.1
MSTRG.4857 Avicennia marina HOM05D003351 ORTHO05D003806 6.0e-49 198.0 149 65.1
EL10Ac1g00424 Beta vulgaris HOM05D003351 ORTHO05D003806 7.8e-49 197.6 149 66.4
THA.LOC104814102 Tarenaya hassleriana HOM05D003351 ORTHO05D003806 7.8e-49 197.6 149 63.1
Ca_23637_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 1.3e-48 196.8 148 60.8
Migut.N01442 Erythranthe guttata HOM05D003351 ORTHO05D003806 1.7e-48 196.4 145 67.6
Actinidia33422 Actinidia chinensis HOM05D003351 ORTHO05D003806 3.0e-48 195.7 149 65.1
TPR.G37800 Trifolium pratense HOM05D003351 ORTHO05D003806 3.0e-48 195.7 149 65.8
HPP92_008506 Vanilla planifolia HOM05D003351 ORTHO05D003806 3.0e-48 195.7 144 66.0
MELO3C006113.2 Cucumis melo HOM05D003351 ORTHO05D003806 3.9e-48 195.3 149 65.1
Sc23g0002940 Simmondsia chinensis HOM05D003351 ORTHO05D003806 1.5e-47 193.4 149 63.8
Ah.05g180660 Amaranthus hybridus HOM05D003351 ORTHO05D003806 2.8e-46 189.1 149 63.8
SGA_v2.0_scaffold43G16419 Striga asiatica HOM05D003351 ORTHO05D003806 4.7e-46 188.3 156 62.2
Lj3g0018331 Lotus japonicus HOM05D003351 ORTHO05D003806 6.2e-46 188.0 151 60.3
vmacro23203 Vaccinium macrocarpon HOM05D003351 ORTHO05D003806 6.2e-46 188.0 144 63.9
Lalb_Chr19g0126941 Lupinus albus HOM05D003351 ORTHO05D003806 1.4e-45 186.8 144 59.0
SalBow5G0930 Salvia bowleyana HOM05D003351 ORTHO05D003806 1.4e-45 186.8 149 59.7
SalBow5G3927 Salvia bowleyana HOM05D003351 ORTHO05D003806 1.4e-45 186.8 149 59.7
Aqoxy7G00326 Aquilegia oxysepala HOM05D003351 ORTHO05D003806 1.8e-45 186.4 147 61.9
Medtr8g030920 Medicago truncatula HOM05D003351 ORTHO05D003806 1.8e-45 186.4 146 60.3
CDE11G0862 Ceratophyllum demersum HOM05D003351 ORTHO05D003806 2.4e-45 186.0 159 57.9
DCAR_015970 Daucus carota HOM05D003351 ORTHO05D003806 5.2e-45 184.9 150 62.0
Manes.01G257800 Manihot esculenta HOM05D003351 ORTHO05D003806 6.8e-45 184.5 149 60.4
Gohir.D11G092700 Gossypium hirsutum HOM05D003351 ORTHO05D003806 2.0e-44 183.0 130 66.9
Lalb_Chr17g0339681 Lupinus albus HOM05D003351 ORTHO05D003806 4.4e-44 181.8 143 61.5
Aa31LG1G11070 Aethionema arabicum HOM05D003351 ORTHO05D003806 5.8e-44 181.4 149 60.4
Lj7A514T27 Lonicera japonica HOM05D003351 ORTHO05D003806 2.9e-43 179.1 173 56.1
Thhalv10007689m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 1.9e-42 176.4 149 57.7
Psat0s3832g0080 Pisum sativum HOM05D003351 ORTHO05D003806 2.4e-42 176.0 152 58.6
Os04g0558400 Oryza sativa ssp. japonica HOM05D003351 ORTHO05D003806 4.2e-42 175.3 151 57.6
Sp1g00600 Schrenkiella parvula HOM05D003351 ORTHO05D003806 5.4e-42 174.9 149 57.0
BraA10t42310Z Brassica rapa HOM05D003351 ORTHO05D003806 2.7e-41 172.6 150 57.3
PSO478G2412 Papaver somniferum HOM05D003351 ORTHO05D003806 2.7e-41 172.6 153 58.8
AL1G10650 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 3.5e-41 172.2 149 56.4
AT1G01710 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 3.5e-41 172.2 149 57.0
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 1.0e-40 170.6 144 57.6
BolC5t28825H Brassica oleracea HOM05D003351 ORTHO05D003806 1.0e-40 170.6 145 57.2
Psat0s3577g0160 Pisum sativum HOM05D003351 ORTHO05D003806 1.0e-40 170.6 149 57.7
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 2.3e-40 169.5 144 57.6
PSO478G3804 Papaver somniferum HOM05D003351 ORTHO05D003806 2.3e-40 169.5 154 55.8
PSO782G0254 Papaver somniferum HOM05D003351 ORTHO05D003806 2.3e-40 169.5 154 55.8
Carub.0001s0050 Capsella rubella HOM05D003351 ORTHO05D003806 1.9e-39 166.4 145 56.6
DCAR_006927 Daucus carota HOM05D003351 ORTHO05D003806 3.3e-39 165.6 149 59.1
Aa31LG5G470 Aethionema arabicum HOM05D003351 ORTHO05D003806 4.3e-39 165.2 159 54.7
PSO063G6511 Papaver somniferum HOM05D003351 ORTHO05D003806 2.8e-38 162.5 154 55.2
CAN.G78.59 Capsicum annuum HOM05D003351 ORTHO05D003806 1.4e-37 160.2 113 64.6
CARHR248670 Cardamine hirsuta HOM05D003351 ORTHO05D003806 1.4e-37 160.2 151 52.3
Aa31LG5G460 Aethionema arabicum HOM05D003351 ORTHO05D003806 6.4e-35 151.4 145 56.6
AUR62022554 Chenopodium quinoa HOM05D003351 ORTHO05D003806 6.4e-35 151.4 113 65.5
Thhalv10029128m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 3.2e-34 149.1 151 51.7
PSO782G2636 Papaver somniferum HOM05D003351 ORTHO05D003806 3.2e-34 149.1 140 54.3
Peaxi162Scf00020g00237 Petunia axillaris HOM05D003351 ORTHO05D003806 1.2e-33 147.1 136 54.4
Sp6g00550 Schrenkiella parvula HOM05D003351 ORTHO05D003806 1.2e-33 147.1 151 51.0
AL6G52960 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 6.0e-33 144.8 151 50.3
MD01G1059100 Malus domestica HOM05D003351 ORTHO05D003806 6.0e-33 144.8 80 85.0
QL08p048978 Quercus lobata HOM05D003351 ORTHO05D003806 6.0e-33 144.8 103 65.0
TPR.G14856 Trifolium pratense HOM05D003351 ORTHO05D003806 1.0e-32 144.1 100 64.0
A03p32150 Brassica napus HOM05D003351 ORTHO05D003806 1.1e-31 140.6 151 51.0
BraA03t12385Z Brassica rapa HOM05D003351 ORTHO05D003806 5.6e-31 138.3 151 50.3
arahy.Tifrunner.gnm1.ann1.74NP28 Arachis hypogaea HOM05D003351 ORTHO05D003806 7.3e-31 137.9 87 72.4
Glyma.18G232300 Glycine max HOM05D003351 ORTHO05D003806 7.3e-31 137.9 87 73.6
arahy.Tifrunner.gnm1.ann1.CI504D Arachis hypogaea HOM05D003351 ORTHO05D003806 1.6e-30 136.7 87 71.3
BcaC01g06871 Brassica carinata HOM05D003351 ORTHO05D003806 2.1e-30 136.3 151 49.7
BolC3t16188H Brassica oleracea HOM05D003351 ORTHO05D003806 2.1e-30 136.3 151 49.7
Lsat_1_v5_gn_7_4460 Lactuca sativa HOM05D003351 ORTHO05D003806 2.1e-30 136.3 145 51.0
Hund27282 Selenicereus undatus HOM05D003351 ORTHO05D003806 2.1e-30 136.3 150 50.0
Haze_15493 Corylus avellana HOM05D003351 ORTHO05D003806 3.6e-30 135.6 84 77.4
HanXRQChr06g0170071 Helianthus annuus HOM05D003351 ORTHO05D003806 5.3e-29 131.7 145 48.3
Rhsim13G0014400 Rhododendron simsii HOM05D003351 ORTHO05D003806 5.3e-29 131.7 145 51.7
C03p39170 Brassica napus HOM05D003351 ORTHO05D003806 2.0e-28 129.8 147 47.6
BcaB01g02197 Brassica carinata HOM05D003351 ORTHO05D003806 2.6e-28 129.4 150 46.7
BcaC03g16040 Brassica carinata HOM05D003351 ORTHO05D003806 2.6e-28 129.4 150 48.7
BcaNung05354 Brassica carinata HOM05D003351 ORTHO05D003806 2.6e-28 129.4 142 50.7
TAR374G1710 Trochodendron aralioides HOM05D003351 ORTHO05D003806 2.6e-28 129.4 128 53.1
BolC2t09816H Brassica oleracea HOM05D003351 ORTHO05D003806 5.8e-28 128.3 150 48.0
BraA02t07405Z Brassica rapa HOM05D003351 ORTHO05D003806 9.9e-28 127.5 150 47.3
TPR.G40156 Trifolium pratense HOM05D003351 ORTHO05D003806 9.9e-28 127.5 122 50.8
C02p38000 Brassica napus HOM05D003351 ORTHO05D003806 2.2e-27 126.3 148 47.3
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 2.9e-27 125.9 116 52.6
Hund16926 Selenicereus undatus HOM05D003351 ORTHO05D003806 3.8e-27 125.6 105 62.9
Ca_27001_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 2.4e-26 122.9 87 70.1
CiPaw.01G060500 Carya illinoinensis HOM05D003351 ORTHO05D003806 1.6e-25 120.2 86 66.3
Psat0s3577g0120 Pisum sativum HOM05D003351 ORTHO05D003806 2.5e-23 112.8 87 64.4
HanXRQChr04g0121591 Helianthus annuus HOM05D003351 ORTHO05D003806 7.4e-23 111.3 108 55.6
SMO147G0381 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 1.4e-21 107.1 155 40.6
SEGI_17243 Sequoiadendron giganteum HOM05D003351 ORTHO05D003806 1.8e-21 106.7 84 59.5
Pp3c14_7450 Physcomitrium patens HOM05D003351 ORTHO05D003806 9.0e-21 104.4 147 39.5
A02p24120 Brassica napus HOM05D003351 ORTHO05D003806 5.8e-20 101.7 197 36.0
Pp3c12_25760 Physcomitrium patens HOM05D003351 ORTHO05D003806 7.6e-20 101.3 143 35.7
AT4G00520 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 1.1e-18 97.4 115 45.2
Pp3c10_19190 Physcomitrium patens HOM05D003351 ORTHO05D003806 2.7e-17 92.8 145 35.2
BcaC04g24162 Brassica carinata HOM05D003351 ORTHO05D003806 7.9e-17 91.3 113 49.6
Mapoly0016s0008 Marchantia polymorpha HOM05D003351 ORTHO05D003806 2.3e-16 89.7 154 34.4
Cpa.g.sc18.250 Carica papaya HOM05D003351 ORTHO05D003806 1.1e-15 87.4 65 60.0
Nitab4.5_0008002g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 1.5e-15 87.0 63 65.1
Ca_07910_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 5.7e-15 85.1 57 66.7
Psat0s3577g0040 Pisum sativum HOM05D003351 ORTHO05D003806 9.6e-15 84.3 63 58.7
Glyma.18G232200 Glycine max HOM05D003351 ORTHO05D003806 6.2e-14 81.6 63 57.1
BcaB01g02157 Brassica carinata HOM05D003351 ORTHO05D003806 1.1e-13 80.9 151 37.7
BcaB01g02160 Brassica carinata HOM05D003351 ORTHO05D003806 3.1e-13 79.3 88 51.1
Psat0s3832g0040 Pisum sativum HOM05D003351 ORTHO05D003806 2.0e-12 76.6 63 55.6
AagrBONN_evm.TU.Sc2ySwM_228.998 Anthoceros agrestis HOM05D003351 ORTHO05D003806 3.4e-12 75.9 109 41.3
QL08p048991 Quercus lobata HOM05D003351 ORTHO05D003806 3.8e-11 72.4 49 69.4
HanXRQChr04g0121601 Helianthus annuus HOM05D003351 ORTHO05D003806 5.1e-08 62.0 55 52.7
CBR_g48193 Chara braunii HOM05D001353 ORTHO05D013162 5.7e-07 58.5 111 34.2
CBR_g9064 Chara braunii HOM05D001353 ORTHO05D024952 1.6e-06 57.0 121 35.5
arahy.Tifrunner.gnm1.ann1.M81BEJ Arachis hypogaea HOM05D000413 ORTHO05D000292 8.2e-06 54.7 100 36.0
SEGI_36398 Sequoiadendron giganteum HOM05D001353 ORTHO05D013162 8.2e-06 54.7 144 27.8


User provided reference genes

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