Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1053500 Malus domestica HOM05D004612 ORTHO05D004940 6.4e-28 126.7 65 100.0
MD07G1141600 Malus domestica HOM05D004612 ORTHO05D004940 1.2e-26 122.5 63 96.8
FvH4_7g13631 Fragaria vesca HOM05D004612 ORTHO05D004940 2.6e-21 104.8 60 86.7
FAN01G1921 Fragaria x ananassa HOM05D000092 ORTHO05D004940 2.6e-21 104.8 60 86.7
FAN03G2220 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.6e-21 104.8 60 86.7
FAN06G2470 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.6e-21 104.8 60 86.7
FAN06G3441 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.6e-21 104.8 60 86.7
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.6e-21 104.8 60 86.7
Peaxi162Scf00397g00041 Petunia axillaris HOM05D004612 ORTHO05D004940 5.8e-21 103.6 59 86.4
Manes.12G065000 Manihot esculenta HOM05D004612 ORTHO05D004940 2.9e-20 101.3 62 77.4
GSVIVG01026844001 Vitis vinifera HOM05D004612 ORTHO05D004940 6.5e-20 100.1 59 81.4
Potri.014G080600 Populus trichocarpa HOM05D004612 ORTHO05D004940 8.4e-20 99.8 62 77.4
QL08p049561 Quercus lobata HOM05D004612 ORTHO05D004940 8.4e-20 99.8 62 75.8
Sopen05g028090 Solanum pennellii HOM05D004612 ORTHO05D004940 1.1e-19 99.4 55 89.1
CiPaw.02G028400 Carya illinoinensis HOM05D004612 ORTHO05D004940 1.4e-19 99.0 60 80.0
Atru.chr5.445 Acer truncatum HOM05D004612 ORTHO05D004940 3.2e-19 97.8 61 82.0
Nn3g17842 Nelumbo nucifera HOM05D004612 ORTHO05D004940 3.2e-19 97.8 61 78.7
CSS0046042 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 4.2e-19 97.4 59 81.4
Cc02_g37600 Coffea canephora HOM05D004612 ORTHO05D004940 4.2e-19 97.4 59 79.7
Cfa003958 Carpinus fangiana HOM05D004612 ORTHO05D004940 5.5e-19 97.1 62 75.8
Ciclev10024326m.g Citrus clementina HOM05D004612 ORTHO05D004940 7.1e-19 96.7 54 90.7
Solyc05g048770.3 Solanum lycopersicum HOM05D004612 ORTHO05D004940 7.1e-19 96.7 55 87.3
Nitab4.5_0002608g0040 Nicotiana tabacum HOM05D004612 ORTHO05D004940 9.3e-19 96.3 56 85.7
CSS0006325 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.2e-18 95.9 59 79.7
CSS0014629 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.2e-18 95.9 59 79.7
Haze_15464 Corylus avellana HOM05D004612 ORTHO05D004940 1.2e-18 95.9 62 74.2
TAR629G0951 Trochodendron aralioides HOM05D004612 ORTHO05D004940 1.2e-18 95.9 61 77.0
ClCG05G001720 Citrullus lanatus HOM05D004612 ORTHO05D004940 1.6e-18 95.5 62 75.8
Oeu014678.1 Olea europaea HOM05D004612 ORTHO05D004940 1.6e-18 95.5 59 76.3
Nitab4.5_0010827g0010 Nicotiana tabacum HOM05D004612 ORTHO05D004940 2.1e-18 95.1 56 83.9
vmacro13313 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 2.1e-18 95.1 63 73.0
Hma1.2p1_0033F.1_g020400 Hydrangea macrophylla HOM05D004612 ORTHO05D004940 2.7e-18 94.7 60 78.3
MELO3C006131.2 Cucumis melo HOM05D004612 ORTHO05D004940 3.5e-18 94.4 62 75.8
Dinv32447 Davidia involucrata HOM05D004612 ORTHO05D004940 3.5e-18 94.4 60 75.0
Gohir.A11G082600 Gossypium hirsutum HOM05D004612 ORTHO05D004940 4.6e-18 94.0 61 78.7
Sed0015875 Sechium edule HOM05D004612 ORTHO05D004940 4.6e-18 94.0 61 75.4
TWI59G0622 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 4.6e-18 94.0 62 74.2
CsaV3_3G009110 Cucumis sativus L. HOM05D004612 ORTHO05D004940 7.9e-18 93.2 62 74.2
Duzib133G0359 Durio zibethinus HOM05D004612 ORTHO05D004940 7.9e-18 93.2 62 72.6
Rhsim07G0018100 Rhododendron simsii HOM05D004612 ORTHO05D004940 7.9e-18 93.2 59 76.3
SalBow3G1907 Salvia bowleyana HOM05D004612 ORTHO05D004940 7.9e-18 93.2 61 77.0
Actinidia09998 Actinidia chinensis HOM05D004612 ORTHO05D004940 1.0e-17 92.8 59 74.6
MSTRG.17249 Avicennia marina HOM05D004612 ORTHO05D004940 1.0e-17 92.8 63 71.4
Cpa.g.sc20.34 Carica papaya HOM05D004612 ORTHO05D004940 1.3e-17 92.4 59 74.6
Eucgr.D02267 Eucalyptus grandis HOM05D004612 ORTHO05D004940 1.3e-17 92.4 61 75.4
PSO782G5368 Papaver somniferum HOM05D004612 ORTHO05D004940 1.8e-17 92.0 58 75.9
Gorai.007G097300 Gossypium raimondii HOM05D004612 ORTHO05D004940 2.3e-17 91.7 60 78.3
EL10Ac1g00526 Beta vulgaris HOM05D004612 ORTHO05D004940 3.0e-17 91.3 62 71.0
Hund16942 Selenicereus undatus HOM05D004612 ORTHO05D004940 3.0e-17 91.3 62 71.0
Thecc.01G363500 Theobroma cacao HOM05D004612 ORTHO05D004940 3.0e-17 91.3 54 83.3
PSO063G2700 Papaver somniferum HOM05D004612 ORTHO05D004940 5.1e-17 90.5 58 75.9
CAN.G718.1 Capsicum annuum HOM05D004612 ORTHO05D004940 8.7e-17 89.7 55 80.0
AUR62023440 Chenopodium quinoa HOM05D004612 ORTHO05D004940 8.7e-17 89.7 63 68.3
AUR62033327 Chenopodium quinoa HOM05D004612 ORTHO05D004940 8.7e-17 89.7 63 68.3
Lj9C580G6 Lonicera japonica HOM05D004612 ORTHO05D004940 8.7e-17 89.7 65 70.8
Lj3g0020312 Lotus japonicus HOM05D004612 ORTHO05D004940 8.7e-17 89.7 63 71.4
Migut.B01722 Erythranthe guttata HOM05D004612 ORTHO05D004940 1.5e-16 89.0 59 76.3
SGA_v2.0_scaffold95G28856 Striga asiatica HOM05D004612 ORTHO05D004940 1.5e-16 89.0 59 71.2
AUR62004317 Chenopodium quinoa HOM05D004612 ORTHO05D004940 2.5e-16 88.2 63 66.7
AUR62033332 Chenopodium quinoa HOM05D004612 ORTHO05D004940 3.3e-16 87.8 63 66.7
AL6G52840 Arabidopsis lyrata HOM05D004612 ORTHO05D004940 5.7e-16 87.0 59 69.5
AT4G00590 Arabidopsis thaliana HOM05D004612 ORTHO05D004940 5.7e-16 87.0 59 69.5
Ca_27541_v3 Cicer arietinum L. HOM05D004612 ORTHO05D004940 5.7e-16 87.0 62 71.0
HanXRQChr16g0523031 Helianthus annuus HOM05D004612 ORTHO05D004940 5.7e-16 87.0 57 71.9
Lsat_1_v5_gn_4_36480 Lactuca sativa HOM05D004612 ORTHO05D004940 5.7e-16 87.0 57 75.4
THA.LOC104801450 Tarenaya hassleriana HOM05D004612 ORTHO05D004940 5.7e-16 87.0 58 74.1
BcaB01g02261 Brassica carinata HOM05D004612 ORTHO05D004940 7.4e-16 86.7 59 69.5
PGR031G1383 Punica granatum HOM05D004612 ORTHO05D004940 7.4e-16 86.7 59 78.0
Ah.05g176430 Amaranthus hybridus HOM05D004612 ORTHO05D004940 9.6e-16 86.3 61 67.2
Lalb_Chr10g0097231 Lupinus albus HOM05D004612 ORTHO05D004940 9.6e-16 86.3 58 72.4
TPR.G4369 Trifolium pratense HOM05D004612 ORTHO05D004940 9.6e-16 86.3 59 69.5
arahy.Tifrunner.gnm1.ann1.4I97V1 Arachis hypogaea HOM05D004612 ORTHO05D004940 1.3e-15 85.9 62 66.1
A09p00400 Brassica napus HOM05D004612 ORTHO05D004940 1.3e-15 85.9 59 67.8
BraA09t35721Z Brassica rapa HOM05D004612 ORTHO05D004940 1.3e-15 85.9 59 67.8
unitig_0.g1278 Utricularia gibba HOM05D004612 ORTHO05D004940 1.6e-15 85.5 62 62.9
BcaB01g02263 Brassica carinata HOM05D004612 ORTHO05D004940 2.1e-15 85.1 59 67.8
BcaC04g24158 Brassica carinata HOM05D004612 ORTHO05D004940 2.1e-15 85.1 59 67.8
C09p00500 Brassica napus HOM05D004612 ORTHO05D004940 2.1e-15 85.1 59 67.8
BolC9t52984H Brassica oleracea HOM05D004612 ORTHO05D004940 2.1e-15 85.1 59 67.8
ECA234G1569 Erigeron canadensis HOM05D004612 ORTHO05D004940 2.1e-15 85.1 54 74.1
Aa31LG5G400 Aethionema arabicum HOM05D004612 ORTHO05D004940 2.8e-15 84.7 54 74.1
Os04g0682500 Oryza sativa ssp. japonica HOM05D004612 ORTHO05D004940 2.8e-15 84.7 57 71.9
Carub.0006s3663 Capsella rubella HOM05D004612 ORTHO05D004940 3.7e-15 84.3 59 66.1
arahy.Tifrunner.gnm1.ann1.B6YWYF Arachis hypogaea HOM05D004612 ORTHO05D004940 4.8e-15 84.0 62 64.5
Glyma.03G096900 Glycine max HOM05D004612 ORTHO05D004940 4.8e-15 84.0 58 72.4
DCAR_008600 Daucus carota HOM05D004612 ORTHO05D004940 1.1e-14 82.8 55 74.5
Thhalv10028700m.g Eutrema salsugineum HOM05D004612 ORTHO05D004940 1.1e-14 82.8 59 66.1
Medtr8g031580 Medicago truncatula HOM05D004612 ORTHO05D004940 1.8e-14 82.0 58 70.7
VMungo1127G0842 Vigna mungo HOM05D004612 ORTHO05D004940 3.1e-14 81.3 58 69.0
Sc07g0008070 Simmondsia chinensis HOM05D004612 ORTHO05D004940 5.3e-14 80.5 59 71.2
Psat4g153800 Pisum sativum HOM05D004612 ORTHO05D004940 2.0e-13 78.6 62 66.1
SEGI_33425 Sequoiadendron giganteum HOM05D004612 ORTHO05D004940 3.4e-13 77.8 62 61.3
RcHm_v2.0_Chr1g0353681 Rosa chinensis HOM05D004612 ORTHO05D004940 5.0e-12 73.9 45 80.0
SMO364G0809 Selaginella moellendorffii HOM05D004612 ORTHO05D004940 2.5e-11 71.6 59 61.0
HPP92_021103 Vanilla planifolia HOM05D004612 ORTHO05D004940 3.2e-11 71.2 51 62.7
CSS0003938 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 9.3e-11 69.7 66 57.6
Oeu014679.1 Olea europaea HOM05D041444 ORTHO05D004940 2.7e-10 68.2 54 64.8
CDE05G3327 Ceratophyllum demersum HOM05D004612 ORTHO05D004940 1.8e-09 65.5 44 70.5
CSS0040114 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 5.1e-09 63.9 58 58.6
Pp3c10_3850 Physcomitrium patens HOM05D004612 ORTHO05D004940 1.5e-08 62.4 55 56.4
Actinidia20931 Actinidia chinensis HOM05D004612 ORTHO05D004940 3.3e-08 61.2 42 69.0
MBI17_g08172_MAGBIO Magnolia biondii HOM05D004612 ORTHO05D004940 5.7e-08 60.5 46 67.4


User provided reference genes

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