Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 1.3e-123 446.4 225 100.0
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 2.2e-75 286.2 186 82.8
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 2.3e-72 276.2 184 77.7
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 8.9e-69 264.2 163 82.8
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.5e-68 263.5 180 76.7
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.0e-68 263.1 180 76.1
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.0e-68 263.1 180 76.1
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.0e-68 263.1 180 76.1
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.6e-68 262.7 180 76.1
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 2.6e-68 262.7 180 76.1
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 2.6e-68 262.7 180 76.1
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.7e-67 260.0 180 75.6
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.2e-67 259.6 180 75.6
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 3.8e-67 258.8 180 75.6
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 2.4e-66 256.1 184 72.8
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 6.6e-64 248.1 171 76.0
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 1.3e-62 243.8 183 69.9
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 2.1e-62 243.0 184 67.4
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 4.8e-62 241.9 185 69.2
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 1.1e-61 240.7 184 68.5
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 3.1e-61 239.2 180 69.4
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 4.0e-61 238.8 183 68.9
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 9.9e-60 234.2 182 67.6
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 9.9e-60 234.2 209 61.2
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 1.3e-59 233.8 183 67.2
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 2.2e-59 233.0 181 68.5
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 3.8e-59 232.3 210 58.6
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 6.4e-59 231.5 184 65.8
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 8.4e-59 231.1 185 66.5
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 8.4e-59 231.1 183 65.6
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-58 230.7 163 74.8
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.1e-58 230.7 189 62.4
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 1.4e-58 230.3 182 67.6
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 2.4e-58 229.6 183 65.0
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 3.2e-58 229.2 183 65.0
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 3.2e-58 229.2 183 65.0
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 3.2e-58 229.2 183 66.1
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 4.2e-58 228.8 182 65.9
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 5.4e-58 228.4 183 65.6
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 5.4e-58 228.4 183 65.6
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 7.1e-58 228.0 183 65.6
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 7.1e-58 228.0 184 65.2
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 7.1e-58 228.0 181 67.4
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 9.3e-58 227.6 183 66.1
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.2e-57 227.3 184 64.7
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 1.6e-57 226.9 183 66.7
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 2.1e-57 226.5 183 65.0
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 4.6e-57 225.3 182 62.6
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 7.9e-57 224.6 184 63.6
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 7.9e-57 224.6 182 62.6
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 7.9e-57 224.6 182 63.7
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.3e-56 223.8 184 64.1
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.3e-56 223.8 184 64.1
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 1.3e-56 223.8 182 62.6
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.7e-56 223.4 183 63.9
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 1.7e-56 223.4 182 62.1
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 1.7e-56 223.4 183 66.1
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 3.0e-56 222.6 179 66.5
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 5.1e-56 221.9 179 64.2
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 6.6e-56 221.5 182 61.0
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 6.6e-56 221.5 182 61.0
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 1.1e-55 220.7 183 62.3
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.1e-55 220.7 210 56.7
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 1.1e-55 220.7 184 62.5
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 1.5e-55 220.3 185 60.5
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.5e-55 220.3 174 64.9
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 1.9e-55 219.9 185 60.0
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 1.9e-55 219.9 185 60.0
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 2.5e-55 219.5 143 74.8
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.5e-55 219.5 182 61.0
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 3.3e-55 219.2 208 58.2
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 3.3e-55 219.2 184 60.3
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 4.3e-55 218.8 184 62.0
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 4.3e-55 218.8 182 63.2
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 4.3e-55 218.8 183 60.7
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 5.6e-55 218.4 189 58.2
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 5.6e-55 218.4 181 62.4
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 7.4e-55 218.0 185 60.0
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 7.4e-55 218.0 185 60.0
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 7.4e-55 218.0 181 63.0
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 9.6e-55 217.6 145 75.2
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 1.6e-54 216.9 179 62.6
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 2.1e-54 216.5 181 62.4
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 2.1e-54 216.5 193 58.5
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 2.8e-54 216.1 182 59.3
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 2.8e-54 216.1 182 60.4
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 3.6e-54 215.7 189 60.3
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 4.8e-54 215.3 182 59.9
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 4.8e-54 215.3 185 62.7
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 4.8e-54 215.3 180 62.2
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 8.1e-54 214.5 179 60.9
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 5.3e-53 211.8 179 59.8
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 6.9e-53 211.5 184 59.2
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 9.0e-53 211.1 185 60.0
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.2e-52 210.7 182 59.3
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.5e-52 210.3 181 60.2
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 2.0e-52 209.9 180 60.0
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 9.9e-52 207.6 186 59.7
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.4e-50 203.8 143 69.9
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 3.2e-50 202.6 202 55.4
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 5.5e-50 201.8 164 65.2
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 2.1e-49 199.9 179 57.0
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 4.6e-49 198.7 179 56.4
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 5.1e-48 195.3 180 63.3
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 1.5e-47 193.7 183 56.3
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 4.3e-47 192.2 145 66.2
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 5.3e-45 185.3 182 56.6
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.2e-44 184.1 181 55.8
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 3.4e-44 182.6 125 70.4
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 1.6e-38 163.7 179 50.3
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 2.4e-37 159.8 183 46.4
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 6.9e-37 158.3 97 75.3
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 3.5e-33 146.0 101 66.3
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.1e-31 141.0 178 46.1
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 3.3e-31 139.4 144 52.1
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 4.2e-26 122.5 108 63.9
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 2.2e-22 110.2 85 63.5
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 4.8e-22 109.0 75 69.3
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 6.3e-22 108.6 110 57.3
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 8.2e-22 108.2 125 48.0
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 3.1e-21 106.3 88 59.1
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 3.1e-21 106.3 88 59.1
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 3.1e-21 106.3 88 59.1
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 7.2e-18 95.1 148 41.9
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 2.3e-16 90.1 56 78.6
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 4.4e-15 85.9 57 71.9
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 3.1e-13 79.7 138 39.9
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 3.1e-13 79.7 82 58.5
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.2e-12 77.8 56 66.1
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 1.7e-11 73.9 184 31.5
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 5.0e-11 72.4 80 56.2
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 7.2e-10 68.6 57 56.1


User provided reference genes

Program Settings