Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 4.7e-94 347.8 173 100.0
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 2.3e-48 196.1 131 80.2
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 2.9e-43 179.1 129 75.2
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 9.4e-42 174.1 127 71.7
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 9.4e-42 174.1 127 71.7
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.7e-41 172.6 127 71.7
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.6e-41 172.2 127 70.9
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.4e-40 170.2 127 70.9
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.4e-40 170.2 127 70.9
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.8e-40 169.9 127 71.7
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.3e-40 169.5 127 71.7
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 2.5e-39 166.0 125 69.6
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 3.3e-39 165.6 127 65.4
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 1.4e-37 160.2 128 62.5
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.8e-37 159.8 127 63.0
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 2.4e-37 159.5 127 63.8
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 4.1e-37 158.7 130 60.8
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 4.1e-37 158.7 130 60.8
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 4.1e-37 158.7 125 64.8
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 9.1e-37 157.5 131 65.6
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 7.7e-36 154.5 127 63.8
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.0e-35 154.1 129 59.7
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.7e-35 153.3 127 62.2
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 2.9e-35 152.5 129 58.9
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 3.2e-34 149.1 125 64.8
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 5.5e-34 148.3 130 59.2
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 9.4e-34 147.5 128 60.2
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 9.4e-34 147.5 129 58.9
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 1.6e-33 146.7 128 58.6
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.1e-33 146.4 129 56.6
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 2.7e-33 146.0 126 62.7
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 3.6e-33 145.6 128 62.5
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 4.7e-33 145.2 128 62.5
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 4.7e-33 145.2 128 63.3
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 6.1e-33 144.8 128 64.1
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 7.9e-33 144.4 128 57.8
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 1.0e-32 144.1 128 62.5
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 1.8e-32 143.3 125 57.6
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 1.8e-32 143.3 127 60.6
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 1.8e-32 143.3 128 61.7
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 2.3e-32 142.9 127 55.1
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 3.9e-32 142.1 126 55.6
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 3.9e-32 142.1 128 57.8
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 5.1e-32 141.7 129 60.5
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 6.7e-32 141.4 127 54.3
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 6.7e-32 141.4 127 55.1
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 1.5e-31 140.2 126 60.3
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 2.0e-31 139.8 127 56.7
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 3.3e-31 139.0 127 56.7
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 5.7e-31 138.3 129 55.0
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.3e-30 137.1 178 46.1
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 1.7e-30 136.7 126 56.3
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 1.7e-30 136.7 129 56.6
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.8e-30 136.0 126 57.9
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 3.7e-30 135.6 127 54.3
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 3.7e-30 135.6 129 56.6
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 3.7e-30 135.6 126 57.9
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 3.7e-30 135.6 126 59.5
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 6.3e-30 134.8 129 51.9
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 6.3e-30 134.8 129 58.1
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 8.2e-30 134.4 126 53.2
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.1e-29 134.0 126 55.6
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.4e-29 133.7 178 44.9
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.4e-29 133.7 127 55.1
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 1.8e-29 133.3 126 54.8
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 1.8e-29 133.3 167 44.3
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.8e-29 133.3 167 47.3
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 5.3e-29 131.7 164 47.6
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 7.0e-29 131.3 126 57.9
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 1.2e-28 130.6 124 60.5
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 1.2e-28 130.6 126 53.2
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 1.2e-28 130.6 126 58.7
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 1.5e-28 130.2 126 54.0
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 1.5e-28 130.2 127 53.5
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 1.5e-28 130.2 166 46.4
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 3.5e-28 129.0 131 54.2
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 4.5e-28 128.6 176 45.5
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 5.9e-28 128.3 129 52.7
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 7.7e-28 127.9 131 53.4
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 7.7e-28 127.9 131 51.1
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.3e-27 127.1 161 47.2
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 1.3e-27 127.1 132 50.8
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 2.2e-27 126.3 128 52.3
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 2.9e-27 125.9 126 51.6
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 2.9e-27 125.9 125 53.6
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 5.0e-27 125.2 131 52.7
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 5.0e-27 125.2 126 54.0
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 6.5e-27 124.8 126 52.4
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 1.1e-26 124.0 131 52.7
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 1.1e-26 124.0 127 51.2
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 5.5e-26 121.7 126 52.4
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.2e-25 120.6 126 50.8
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 2.7e-25 119.4 143 48.3
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 2.7e-25 119.4 129 51.9
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 3.6e-25 119.0 126 53.2
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 1.0e-24 117.5 173 43.4
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.0e-24 117.5 127 50.4
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 3.0e-24 115.9 129 50.4
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 2.6e-23 112.8 155 43.9
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 4.4e-23 112.1 136 48.5
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 2.2e-22 109.8 123 48.0
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 2.4e-21 106.3 76 67.1
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 5.9e-20 101.7 92 60.9
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 2.5e-18 96.3 127 41.7
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-17 94.0 69 69.6
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 5.2e-16 88.6 123 41.5
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 5.7e-15 85.1 82 56.1
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 5.7e-15 85.1 62 67.7
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 5.7e-15 85.1 62 67.7
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 2.2e-14 83.2 122 40.2
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 1.6e-12 77.0 43 88.4
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-11 73.6 43 86.0
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-11 73.6 43 86.0
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 2.9e-11 72.8 54 70.4
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 6.5e-11 71.6 46 82.6
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 6.5e-11 71.6 46 82.6
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 8.5e-11 71.2 123 37.4
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 4.2e-10 68.9 52 57.7
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 1.6e-09 67.0 43 72.1
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 4.0e-08 62.4 43 67.4


User provided reference genes

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