Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 0.0e+00 1179.1 601 100.0
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 1.3e-303 1045.8 610 89.0
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 2.1e-282 975.3 612 83.3
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 8.1e-242 840.5 607 73.0
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.1e-238 830.1 610 73.0
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.9e-238 829.3 613 72.1
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.2e-238 828.6 610 73.0
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.0e-228 797.0 578 73.7
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 3.2e-222 775.4 611 68.6
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.5e-221 771.9 576 71.2
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 1.1e-219 766.9 621 66.8
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 9.6e-219 763.8 613 66.4
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 3.0e-212 742.3 620 66.6
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 2.5e-211 739.2 616 64.4
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 8.1e-210 734.2 611 64.6
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 5.3e-209 731.5 611 64.2
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 4.5e-208 728.4 611 64.2
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.7e-207 726.5 616 65.4
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 2.5e-203 712.6 613 63.0
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.4e-200 702.2 567 66.8
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 2.9e-199 699.1 621 62.3
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 5.1e-196 688.3 615 62.6
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 2.2e-194 682.9 678 57.4
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.6e-192 676.0 648 59.6
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.6e-192 676.0 612 61.6
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.2e-191 672.9 613 61.0
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 2.2e-191 672.9 613 62.6
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 5.0e-191 671.8 613 60.4
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 2.3e-188 662.9 608 60.2
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 4.1e-185 652.1 614 60.9
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 1.2e-184 650.6 626 57.7
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 5.5e-182 641.7 626 58.1
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 7.4e-179 631.3 617 57.7
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 9.7e-179 630.9 614 57.7
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.3e-178 630.6 707 51.5
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 3.7e-178 629.0 621 57.8
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.1e-177 627.5 707 51.6
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 1.8e-177 626.7 629 58.5
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 2.6e-176 622.9 509 65.8
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 2.9e-175 619.4 623 57.5
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.1e-174 617.5 619 57.0
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 3.2e-174 615.9 477 67.9
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 2.1e-173 613.2 611 56.8
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 1.8e-172 610.1 615 56.1
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 2.3e-172 609.8 620 57.6
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 3.0e-172 609.4 637 56.4
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.2e-171 607.4 560 60.9
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 6.3e-170 601.7 605 55.5
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 4.1e-169 599.0 620 55.5
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.7e-167 593.6 674 51.5
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.7e-167 593.6 674 51.5
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.6e-165 587.0 611 55.0
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 1.4e-164 583.9 631 54.0
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 6.8e-164 581.6 626 53.7
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 2.0e-163 580.1 613 55.0
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 2.6e-163 579.7 583 56.9
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 9.8e-163 577.8 612 54.2
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 4.8e-162 575.5 619 54.4
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 1.4e-161 573.9 645 52.9
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 2.4e-161 573.2 622 53.4
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 7.0e-161 571.6 619 54.4
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.2e-160 570.9 622 53.2
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 1.6e-160 570.5 640 52.7
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 3.5e-160 569.3 628 53.7
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 7.7e-160 568.2 619 54.9
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 8.6e-159 564.7 623 54.1
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 1.5e-158 563.9 614 52.1
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 9.5e-158 561.2 617 54.9
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 1.2e-157 560.8 641 54.6
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 2.8e-157 559.7 623 54.1
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 4.7e-157 558.9 666 50.6
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 2.0e-155 553.5 620 53.4
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 3.4e-155 552.7 624 54.0
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 2.9e-151 539.7 621 52.5
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 9.5e-150 534.6 608 53.0
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 1.3e-146 524.2 628 51.1
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 3.7e-146 522.7 603 51.6
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 1.4e-145 520.8 608 52.6
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.8e-145 520.4 650 49.2
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 9.2e-145 518.1 608 51.3
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 2.0e-144 516.9 612 52.1
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.0e-143 514.6 611 51.9
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 3.9e-143 512.7 627 50.7
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 6.6e-143 511.9 626 50.8
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 6.6e-143 511.9 626 50.8
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 1.1e-140 504.6 615 52.0
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 8.9e-140 501.5 640 49.8
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 1.2e-139 501.1 610 51.8
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 2.6e-139 500.0 606 50.5
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 4.4e-139 499.2 631 49.1
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 4.4e-139 499.2 631 49.3
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 2.9e-138 496.5 575 52.5
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 5.4e-137 492.3 632 49.8
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 7.8e-136 488.4 615 48.9
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 5.2e-124 449.1 414 59.9
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 2.0e-123 447.2 614 48.4
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 3.4e-123 446.4 455 54.9
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 1.1e-116 424.9 614 47.1
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 4.0e-108 396.4 577 45.4
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 2.0e-107 394.0 658 43.9
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 2.9e-106 390.2 410 53.4
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.5e-99 367.9 358 56.1
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.5e-83 314.7 697 35.3
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 1.4e-81 308.1 716 35.1
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 3.2e-81 307.0 235 70.2
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 6.1e-80 302.8 303 56.4
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 1.6e-72 278.1 489 39.9
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 6.7e-55 219.5 298 41.6
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 8.2e-53 212.6 280 47.5
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.7e-48 197.6 280 47.1
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 8.0e-48 196.1 631 28.8
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 5.4e-44 183.3 180 55.6
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 1.0e-39 169.1 154 61.0
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.7e-37 161.8 196 49.0
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 5.4e-36 156.8 497 30.4
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 3.5e-35 154.1 656 27.1
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 5.0e-34 150.2 113 67.3
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 1.9e-33 148.3 581 26.3
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 1.6e-32 145.2 186 50.0
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 8.0e-32 142.9 170 50.6
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 4.0e-31 140.6 590 28.5
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.6e-30 137.9 127 57.5
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 1.3e-29 135.6 114 62.3
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 4.9e-29 133.7 143 58.0
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 4.9e-29 133.7 155 52.3
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.7e-26 125.2 102 64.7
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 3.3e-25 120.9 134 50.7
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 4.7e-24 117.1 186 43.5
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.2e-21 108.2 81 63.0
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 8.3e-21 106.3 88 67.0
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.9e-17 95.1 164 43.9
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.3e-13 82.4 79 48.1
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 2.9e-13 81.3 80 62.5
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.4e-12 79.0 155 40.0
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 1.4e-12 79.0 69 56.5
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 1.7e-10 72.0 82 47.6
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 8.1e-08 63.2 49 61.2
Glyma.11G112400 Glycine max HOM05D005482 ORTHO05D006502 4.4e-06 57.4 58 56.9


User provided reference genes

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