Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1036700 Malus domestica HOM05D007989 ORTHO05D010087 1.9e-113 412.5 207 100.0
MD15G1317900 Malus domestica HOM05D007989 ORTHO05D010087 1.3e-87 326.6 207 82.1
Prupe.6G193900 Prunus persica HOM05D007989 ORTHO05D010087 9.4e-65 250.8 220 64.5
RcHm_v2.0_Chr2g0112271 Rosa chinensis HOM05D007989 ORTHO05D010087 1.2e-54 217.2 207 62.3
FvH4_1g20210 Fragaria vesca HOM05D007989 ORTHO05D010087 2.8e-53 212.6 210 61.0
FAN19G2348 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.1e-52 210.7 210 60.5
FAN26G0087 Fragaria x ananassa HOM05D007989 ORTHO05D010087 7.0e-52 208.0 210 60.0
FAN23G0861 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.6e-51 206.8 210 59.0
FAN28G0040 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.4e-47 193.7 200 59.0
Dinv08871 Davidia involucrata HOM05D007989 ORTHO05D010087 5.2e-47 191.8 209 54.5
QL06p047951 Quercus lobata HOM05D007989 ORTHO05D010087 2.6e-46 189.5 216 51.9
Haze_24825 Corylus avellana HOM05D007989 ORTHO05D010087 2.2e-45 186.4 207 54.6
Haze_24830 Corylus avellana HOM05D007989 ORTHO05D010087 2.2e-45 186.4 207 54.6
Cfa002588 Carpinus fangiana HOM05D007989 ORTHO05D010087 2.8e-45 186.0 211 53.6
TWI53G0073 Tripterygium wilfordii HOM05D007989 ORTHO05D010087 1.4e-44 183.7 205 51.7
CiPaw.04G104100 Carya illinoinensis HOM05D007989 ORTHO05D010087 5.4e-44 181.8 221 50.7
Duzib147G0239 Durio zibethinus HOM05D007989 ORTHO05D010087 2.9e-42 176.0 211 49.8
CiPaw.03G146300 Carya illinoinensis HOM05D007989 ORTHO05D010087 1.1e-41 174.1 210 50.0
COL.COLO4_27300 Corchorus olitorius HOM05D007989 ORTHO05D010087 5.6e-41 171.8 192 52.1
Thecc.01G095100 Theobroma cacao HOM05D007989 ORTHO05D010087 1.6e-40 170.2 210 48.1
Potri.007G097400 Populus trichocarpa HOM05D007989 ORTHO05D010087 1.5e-38 163.7 219 47.0
Manes.13G097300 Manihot esculenta HOM05D007989 ORTHO05D010087 1.7e-37 160.2 193 50.8
Potri.005G071400 Populus trichocarpa HOM05D007989 ORTHO05D010087 4.9e-37 158.7 216 48.6
Atru.chr3.1338 Acer truncatum HOM05D007989 ORTHO05D010087 7.0e-36 154.8 209 48.3
Cpa.g.sc55.66 Carica papaya HOM05D007989 ORTHO05D010087 3.3e-33 146.0 211 45.5
Sabra05G0058400 Salix brachista HOM05D007989 ORTHO05D010087 9.5e-33 144.4 222 46.4
CANSAT01G0464 Cannabis sativa HOM05D007989 ORTHO05D010087 8.9e-31 137.9 207 47.3
Sabra07G0080700 Salix brachista HOM05D007989 ORTHO05D010087 2.0e-30 136.7 206 43.2
Gohir.A02G130000 Gossypium hirsutum HOM05D007989 ORTHO05D010087 3.4e-30 136.0 208 42.3
Gorai.003G041700 Gossypium raimondii HOM05D007989 ORTHO05D010087 3.4e-30 136.0 208 42.3
Nitab4.5_0005930g0030 Nicotiana tabacum HOM05D007989 ORTHO05D010087 5.8e-30 135.2 208 42.3
Gohir.D03G040900 Gossypium hirsutum HOM05D007989 ORTHO05D010087 7.5e-30 134.8 208 42.3
Ciclev10026467m.g Citrus clementina HOM05D007989 ORTHO05D010087 3.7e-29 132.5 177 46.3
Nitab4.5_0000241g0120 Nicotiana tabacum HOM05D007989 ORTHO05D010087 3.7e-29 132.5 208 40.9
Nn1g05466 Nelumbo nucifera HOM05D007989 ORTHO05D010087 1.9e-28 130.2 199 45.7
Lj6g0026253 Lotus japonicus HOM05D007989 ORTHO05D010087 4.1e-28 129.0 185 48.1
PSO541G3922 Papaver somniferum HOM05D007989 ORTHO05D010087 4.1e-28 129.0 182 41.8
EL10Ac6g14814 Beta vulgaris HOM05D007989 ORTHO05D010087 2.7e-27 126.3 211 40.3
TAR628G0250 Trochodendron aralioides HOM05D007989 ORTHO05D010087 4.6e-27 125.6 187 43.9
TPR.G30536 Trifolium pratense HOM05D007989 ORTHO05D010087 7.8e-27 124.8 183 47.0
arahy.Tifrunner.gnm1.ann1.92LXSJ Arachis hypogaea HOM05D007989 ORTHO05D010087 1.3e-26 124.0 183 46.4
PSO675G2967 Papaver somniferum HOM05D007989 ORTHO05D010087 2.3e-26 123.2 192 42.2
arahy.Tifrunner.gnm1.ann1.FU6RJX Arachis hypogaea HOM05D007989 ORTHO05D010087 6.6e-26 121.7 174 47.7
AUR62027199 Chenopodium quinoa HOM05D007989 ORTHO05D010087 8.6e-26 121.3 213 39.4
Medtr3g086760 Medicago truncatula HOM05D007989 ORTHO05D010087 2.5e-25 119.8 179 45.8
Ca_30637_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 3.3e-25 119.4 182 45.6
Glyma.18G014700 Glycine max HOM05D007989 ORTHO05D010087 4.3e-25 119.0 182 45.1
Aqoxy6G00707 Aquilegia oxysepala HOM05D007989 ORTHO05D010087 9.5e-25 117.9 202 40.1
Hma1.2p1_0019F.1_g013880 Hydrangea macrophylla HOM05D007989 ORTHO05D010087 9.5e-25 117.9 221 39.8
Rhsim10G0168900 Rhododendron simsii HOM05D007989 ORTHO05D010087 1.4e-23 114.0 181 43.1
Psat1g083960 Pisum sativum HOM05D007989 ORTHO05D010087 1.8e-23 113.6 171 47.4
Phvul.001G254200 Phaseolus vulgaris HOM05D007989 ORTHO05D010087 8.9e-23 111.3 179 43.0
CAN.G905.6 Capsicum annuum HOM05D007989 ORTHO05D010087 1.5e-22 110.5 205 35.6
VMungo1383G0535 Vigna mungo HOM05D007989 ORTHO05D010087 1.5e-22 110.5 174 44.3
Migut.H02322 Erythranthe guttata HOM05D007989 ORTHO05D010087 2.6e-22 109.8 210 39.0
Actinidia06535 Actinidia chinensis HOM05D007989 ORTHO05D010087 1.7e-21 107.1 156 44.9
Glyma.11G242400 Glycine max HOM05D007989 ORTHO05D010087 1.7e-21 107.1 183 42.6
MBI06_g03317_MAGBIO Magnolia biondii HOM05D007989 ORTHO05D010087 2.9e-21 106.3 172 40.1
vmacro12990 Vaccinium macrocarpon HOM05D007989 ORTHO05D010087 3.7e-21 105.9 118 52.5
PGSC0003DMG401016146 Solanum tuberosum HOM05D007989 ORTHO05D010087 4.9e-21 105.5 205 35.6
Solyc11g010320.1 Solanum lycopersicum HOM05D007989 ORTHO05D010087 3.2e-20 102.8 204 34.3
Sopen11g005100 Solanum pennellii HOM05D007989 ORTHO05D010087 3.2e-20 102.8 205 34.6
Oeu002158.1 Olea europaea HOM05D007989 ORTHO05D010087 3.5e-19 99.4 120 50.8
Lalb_Chr08g0230941 Lupinus albus HOM05D007989 ORTHO05D010087 1.7e-18 97.1 121 47.9
CsaV3_4G009020 Cucumis sativus L. HOM05D007989 ORTHO05D010087 9.5e-17 91.3 193 34.7
PGR004G2401 Punica granatum HOM05D007989 ORTHO05D010087 2.1e-16 90.1 171 36.8
MELO3C018999.2 Cucumis melo HOM05D007989 ORTHO05D010087 8.1e-16 88.2 193 33.7
ClCG10G008400 Citrullus lanatus HOM05D007989 ORTHO05D010087 3.1e-15 86.3 193 35.2
Aa31LG1G10610 Aethionema arabicum HOM05D002476 ORTHO05D002652 2.0e-14 83.6 170 37.1
A09p69030 Brassica napus HOM05D002476 ORTHO05D002652 1.7e-13 80.5 186 37.1
Sc16g0000320 Simmondsia chinensis HOM05D007989 ORTHO05D010087 2.9e-13 79.7 121 40.5
BolC8t52874H Brassica oleracea HOM05D002476 ORTHO05D002652 1.9e-12 77.0 187 33.7
BraA09t42240Z Brassica rapa HOM05D002476 ORTHO05D002652 1.2e-11 74.3 186 35.5
AL1G11220 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 2.7e-11 73.2 185 35.7
Carub.0004s2927 Capsella rubella HOM05D002476 ORTHO05D002652 2.7e-11 73.2 190 33.7
HPP92_002319 Vanilla planifolia HOM05D007989 ORTHO05D010087 2.7e-11 73.2 165 35.2
AT1G01240 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 3.5e-11 72.8 184 35.3
Ca_16505_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 3.5e-11 72.8 144 41.7
THA.LOC104825884 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 7.8e-11 71.6 205 34.6
Zm00001eb033460 Zea mays HOM05D007989 ORTHO05D010087 7.8e-11 71.6 170 35.9
Aa31LG1G27930 Aethionema arabicum HOM05D002476 ORTHO05D002652 1.3e-10 70.9 179 33.5
AT2G46550 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 2.3e-10 70.1 201 32.3
CARHR141890 Cardamine hirsuta HOM05D002476 ORTHO05D002652 3.9e-10 69.3 180 33.3
Thhalv10001490m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 3.9e-10 69.3 140 37.9
CDE10G0158 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 5.1e-10 68.9 166 31.9
Sed0027218 Sechium edule HOM05D007989 ORTHO05D010087 8.7e-10 68.2 109 42.2
Psat4g214720 Pisum sativum HOM05D002476 ORTHO05D002652 1.1e-09 67.8 126 37.3
Sp1g01040 Schrenkiella parvula HOM05D002476 ORTHO05D002652 1.5e-09 67.4 188 32.4
Sp4g28600 Schrenkiella parvula HOM05D002476 ORTHO05D002652 1.5e-09 67.4 184 33.7
Carub.0001s0097 Capsella rubella HOM05D002476 ORTHO05D002652 3.3e-09 66.2 185 33.5
AL4G45980 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 4.3e-09 65.9 190 33.2
BcaC02g07040 Brassica carinata HOM05D002476 ORTHO05D002652 9.6e-09 64.7 122 37.7
BcaNung06659 Brassica carinata HOM05D002476 ORTHO05D002652 9.6e-09 64.7 122 37.7
BolC4t28710H Brassica oleracea HOM05D002476 ORTHO05D002652 9.6e-09 64.7 130 37.7
BraA04t18904Z Brassica rapa HOM05D002476 ORTHO05D002652 1.2e-08 64.3 146 35.6
C05p00710 Brassica napus HOM05D002476 ORTHO05D002652 2.1e-08 63.5 184 31.0
BcaC02g12672 Brassica carinata HOM05D002476 ORTHO05D002652 2.8e-08 63.2 183 33.3
CARHR001220 Cardamine hirsuta HOM05D002476 ORTHO05D002652 2.8e-08 63.2 185 34.6
AUR62004509 Chenopodium quinoa HOM05D002476 ORTHO05D002652 3.6e-08 62.8 191 28.3
Thhalv10008123m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 3.6e-08 62.8 196 30.1
BraA10t42344Z Brassica rapa HOM05D002476 ORTHO05D002652 4.7e-08 62.4 179 33.5
Lsat_1_v5_gn_8_5381 Lactuca sativa HOM05D002476 ORTHO05D002652 4.7e-08 62.4 117 39.3
VMungo0540G0341 Vigna mungo HOM05D002476 ORTHO05D002652 4.7e-08 62.4 171 33.3
A04p34460 Brassica napus HOM05D002476 ORTHO05D002652 6.2e-08 62.0 146 34.9
A05p01220 Brassica napus HOM05D002476 ORTHO05D002652 6.2e-08 62.0 181 33.1
MD01G1083700 Malus domestica HOM05D002476 ORTHO05D002652 6.2e-08 62.0 222 28.4
PGR031G2287 Punica granatum HOM05D002476 ORTHO05D002652 6.2e-08 62.0 273 26.7
arahy.Tifrunner.gnm1.ann1.2ZXA1E Arachis hypogaea HOM05D002476 ORTHO05D002652 8.1e-08 61.6 181 30.4
arahy.Tifrunner.gnm1.ann1.JF2XAQ Arachis hypogaea HOM05D002476 ORTHO05D002652 8.1e-08 61.6 76 47.4
arahy.Tifrunner.gnm1.ann1.SBQR86 Arachis hypogaea HOM05D002476 ORTHO05D002652 8.1e-08 61.6 76 47.4
BraA05t19123Z Brassica rapa HOM05D002476 ORTHO05D002652 8.1e-08 61.6 181 33.1
unitig_8.g4994 Utricularia gibba HOM05D000331 ORTHO05D005958 8.1e-08 61.6 163 31.3
AUR62023446 Chenopodium quinoa HOM05D002476 ORTHO05D002652 1.1e-07 61.2 256 25.8
Phvul.006G114600 Phaseolus vulgaris HOM05D002476 ORTHO05D002652 1.1e-07 61.2 171 33.3
A10p00670 Brassica napus HOM05D002476 ORTHO05D002652 1.4e-07 60.8 184 29.9
C04p72220 Brassica napus HOM05D002476 ORTHO05D002652 1.4e-07 60.8 122 36.9
FvH4_7g31981 Fragaria vesca HOM05D002476 ORTHO05D002652 1.8e-07 60.5 137 33.6
Ca_23521_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 2.4e-07 60.1 188 29.3
Migut.B01888 Erythranthe guttata HOM05D002476 ORTHO05D002652 2.4e-07 60.1 195 29.7
SGA_v2.0_scaffold22G09959 Striga asiatica HOM05D002476 ORTHO05D002652 2.4e-07 60.1 247 27.5
BcaC02g07017 Brassica carinata HOM05D002476 ORTHO05D002652 3.1e-07 59.7 167 31.7
FAN06G0225 Fragaria x ananassa HOM05D002476 ORTHO05D002652 3.1e-07 59.7 224 28.6
FAN10G2775 Fragaria x ananassa HOM05D002476 ORTHO05D002652 4.0e-07 59.3 223 27.4
Nn1g00295 Nelumbo nucifera HOM05D002476 ORTHO05D002652 4.0e-07 59.3 105 37.1
FvH4_7g16870 Fragaria vesca HOM05D002476 ORTHO05D002652 5.3e-07 58.9 224 28.6
FAN10G2579 Fragaria x ananassa HOM05D002476 ORTHO05D002652 5.3e-07 58.9 138 34.1
Glyma.04G234400 Glycine max HOM05D002476 ORTHO05D002652 5.3e-07 58.9 153 35.9
CiPaw.01G077700 Carya illinoinensis HOM05D002476 ORTHO05D002652 6.9e-07 58.5 165 29.7
Glyma.06G130200 Glycine max HOM05D002476 ORTHO05D002652 6.9e-07 58.5 73 49.3
THA.LOC104802082 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 6.9e-07 58.5 212 27.8
VMungo1309G1756 Vigna mungo HOM05D002476 ORTHO05D002652 6.9e-07 58.5 149 34.9
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 9.0e-07 58.2 120 36.7
Manes.01G244700 Manihot esculenta HOM05D002476 ORTHO05D002652 9.0e-07 58.2 139 33.8
Phvul.009G051400 Phaseolus vulgaris HOM05D002476 ORTHO05D002652 9.0e-07 58.2 145 34.5
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.2e-06 57.8 137 33.6
FAN03G2932 Fragaria x ananassa HOM05D002476 ORTHO05D002652 1.2e-06 57.8 224 26.8
FAN06G4279 Fragaria x ananassa HOM05D002476 ORTHO05D002652 1.2e-06 57.8 224 28.1
MD01G1222700 Malus domestica HOM05D002476 ORTHO05D002652 1.2e-06 57.8 129 34.9
Os08g0483100 Oryza sativa ssp. japonica HOM05D007989 ORTHO05D010087 1.2e-06 57.8 169 32.5
RcHm_v2.0_Chr1g0381491 Rosa chinensis HOM05D002476 ORTHO05D002652 1.2e-06 57.8 137 32.1
SEGI_39687 Sequoiadendron giganteum HOM05D002476 ORTHO05D002652 1.2e-06 57.8 147 33.3
GSVIVG01027170001 Vitis vinifera HOM05D002476 ORTHO05D002652 1.2e-06 57.8 155 32.3
Ah.05g179390 Amaranthus hybridus HOM05D002476 ORTHO05D002652 1.5e-06 57.4 157 31.2
Lsat_1_v5_gn_7_880 Lactuca sativa HOM05D002476 ORTHO05D002652 1.5e-06 57.4 178 30.3
PSO063G3833 Papaver somniferum HOM05D002476 ORTHO05D002652 1.5e-06 57.4 109 38.5
PSO170G6198 Papaver somniferum HOM05D002476 ORTHO05D002652 1.5e-06 57.4 109 38.5
Sed0024917 Sechium edule HOM05D002476 ORTHO05D002652 1.5e-06 57.4 198 28.8
THA.LOC104817374 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 1.5e-06 57.4 61 54.1
C04p01370 Brassica napus HOM05D002476 ORTHO05D002652 2.0e-06 57.0 120 35.8
COL.COLO4_06227 Corchorus olitorius HOM05D002476 ORTHO05D002652 2.0e-06 57.0 225 27.6
FAN01G0420 Fragaria x ananassa HOM05D002476 ORTHO05D002652 2.0e-06 57.0 137 32.8
FAN10G1192 Fragaria x ananassa HOM05D002476 ORTHO05D002652 2.0e-06 57.0 224 26.3
Solyc01g096100.2 Solanum lycopersicum HOM05D002476 ORTHO05D002652 2.0e-06 57.0 123 35.0
FAN01G1628 Fragaria x ananassa HOM05D002476 ORTHO05D002652 2.6e-06 56.6 225 27.6
Oeu004960.1 Olea europaea HOM05D002476 ORTHO05D002652 2.6e-06 56.6 64 50.0
Potri.014G100300 Populus trichocarpa HOM05D002476 ORTHO05D002652 2.6e-06 56.6 239 26.4
RcHm_v2.0_Chr1g0360101 Rosa chinensis HOM05D002476 ORTHO05D002652 2.6e-06 56.6 226 29.2
BolC4t21790H Brassica oleracea HOM05D002476 ORTHO05D002652 3.4e-06 56.2 183 31.1
Ca_09519_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 3.4e-06 56.2 266 26.7
TWI14G0206 Tripterygium wilfordii HOM05D002476 ORTHO05D002652 3.4e-06 56.2 168 31.5
Atru.chr5.689 Acer truncatum HOM05D002476 ORTHO05D002652 4.4e-06 55.8 135 33.3
Ca_12783_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 4.4e-06 55.8 152 32.9
Ca_12787_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 4.4e-06 55.8 152 32.9
Ca_29819_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 4.4e-06 55.8 152 32.9
Duzib138G1935 Durio zibethinus HOM05D002476 ORTHO05D002652 4.4e-06 55.8 184 29.3
Glyma.03G258600 Glycine max HOM05D002476 ORTHO05D002652 4.4e-06 55.8 136 30.9
MD07G1152400 Malus domestica HOM05D002476 ORTHO05D002652 4.4e-06 55.8 221 28.1
Psat3g001840 Pisum sativum HOM05D002476 ORTHO05D002652 4.4e-06 55.8 135 30.4
MD07G1293300 Malus domestica HOM05D002476 ORTHO05D002652 5.8e-06 55.5 131 34.4
ATR0602G019 Amborella trichopoda HOM05D002476 ORTHO05D002652 7.6e-06 55.1 124 34.7
Nitab4.5_0016714g0010 Nicotiana tabacum HOM05D002476 ORTHO05D002652 7.6e-06 55.1 121 33.1
PSO135G0353 Papaver somniferum HOM05D002476 ORTHO05D002652 7.6e-06 55.1 134 34.3
Hund16720 Selenicereus undatus HOM05D002476 ORTHO05D002652 7.6e-06 55.1 244 27.0
Sopen01g039820 Solanum pennellii HOM05D002476 ORTHO05D002652 7.6e-06 55.1 123 34.1
TPR.G20230 Trifolium pratense HOM05D002476 ORTHO05D002652 7.6e-06 55.1 163 30.1
EL10Ac1g00246 Beta vulgaris HOM05D002476 ORTHO05D002652 9.9e-06 54.7 265 24.5
ECA234G4012 Erigeron canadensis HOM05D002476 ORTHO05D002652 9.9e-06 54.7 113 37.2
Migut.N01533 Erythranthe guttata HOM05D002476 ORTHO05D002652 9.9e-06 54.7 63 47.6
Eucgr.E00042 Eucalyptus grandis HOM05D002476 ORTHO05D002652 9.9e-06 54.7 66 47.0
MBI07_g24772_MAGBIO Magnolia biondii HOM05D002476 ORTHO05D002652 9.9e-06 54.7 131 33.6
Medtr7g117715 Medicago truncatula HOM05D002476 ORTHO05D002652 9.9e-06 54.7 264 25.8
SGA_v2.0_scaffold232G43547 Striga asiatica HOM05D002476 ORTHO05D002652 9.9e-06 54.7 138 30.4


User provided reference genes

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