Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.7e-213 745.7 379 100.0
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 1.7e-173 612.8 379 83.1
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 3.7e-152 542.0 379 74.7
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 1.1e-111 407.5 378 60.6
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.0e-105 386.7 379 59.4
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 5.5e-103 378.6 379 58.6
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.1e-102 376.7 379 58.3
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.6e-102 375.9 379 58.3
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.3e-91 340.9 357 57.1
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 7.0e-82 308.5 379 49.3
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 6.3e-75 285.4 387 45.7
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 4.5e-73 279.3 383 47.3
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 6.5e-72 275.4 398 45.2
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 2.5e-71 273.5 386 47.9
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 6.1e-70 268.9 341 48.7
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.5e-68 264.2 384 45.1
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 5.4e-66 255.8 367 46.6
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 1.2e-65 254.6 379 43.5
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.3e-63 246.5 386 45.3
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 4.2e-63 246.1 385 44.2
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 1.4e-61 241.1 381 45.1
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 3.0e-61 240.0 384 43.2
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 3.4e-60 236.5 400 42.0
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 1.3e-59 234.6 378 44.7
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 3.7e-59 233.0 377 41.9
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.7e-59 233.0 384 41.9
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 8.3e-59 231.9 378 42.3
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 9.2e-58 228.4 376 43.4
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.5e-57 226.1 384 41.1
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 5.9e-57 225.7 378 42.9
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 5.9e-57 225.7 378 42.9
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 5.0e-56 222.6 388 41.8
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 8.6e-56 221.9 377 42.4
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 2.5e-55 220.3 399 41.1
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 1.6e-54 217.6 379 40.9
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.6e-54 217.6 380 41.3
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 4.0e-53 213.0 381 39.9
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 1.2e-52 211.5 383 39.7
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 1.5e-52 211.1 396 40.4
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 2.0e-52 210.7 388 40.7
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 7.0e-50 202.2 178 60.7
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.3e-48 198.0 321 42.7
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 3.0e-48 196.8 398 40.7
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 9.5e-47 191.8 381 37.8
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 1.5e-44 184.5 233 48.5
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 9.8e-44 181.8 386 38.9
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.3e-43 181.4 352 39.8
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 8.3e-43 178.7 375 36.8
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 5.4e-42 176.0 393 36.9
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.6e-41 174.5 353 38.0
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 4.6e-41 172.9 392 35.2
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 3.9e-40 169.9 382 36.9
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.5e-39 167.2 388 35.3
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 4.3e-39 166.4 192 50.5
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.6e-38 164.5 373 33.0
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 4.0e-37 159.8 370 34.9
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 1.2e-36 158.3 354 37.6
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 9.9e-36 155.2 381 34.4
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 9.9e-36 155.2 208 44.2
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 3.7e-35 153.3 376 33.2
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.4e-34 151.4 375 33.9
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.9e-34 151.0 376 33.0
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 1.9e-34 151.0 373 34.3
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 2.4e-34 150.6 381 33.3
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 4.1e-34 149.8 365 32.9
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 4.1e-34 149.8 367 33.8
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 1.2e-33 148.3 376 32.7
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-33 148.3 376 32.7
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 1.2e-33 148.3 376 32.7
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.3e-32 144.8 358 33.0
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.7e-32 144.4 381 32.5
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 5.1e-32 142.9 150 50.0
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 5.1e-32 142.9 150 50.0
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 6.6e-32 142.5 377 34.0
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 6.6e-32 142.5 170 48.2
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 2.5e-31 140.6 150 49.3
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 3.3e-31 140.2 383 32.6
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 7.3e-31 139.0 367 32.7
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 9.5e-31 138.7 362 35.9
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 1.2e-30 138.3 377 32.6
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 1.6e-30 137.9 229 39.3
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.6e-30 137.9 322 32.9
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 1.6e-30 137.9 381 32.8
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 2.1e-30 137.5 242 38.8
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 3.6e-30 136.7 405 30.9
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 3.6e-30 136.7 405 30.9
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 4.7e-30 136.3 373 31.6
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.4e-29 134.8 378 32.5
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 6.8e-29 132.5 144 49.3
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 7.6e-28 129.0 199 43.2
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 1.7e-27 127.9 361 31.9
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.7e-27 127.9 382 30.9
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 2.2e-27 127.5 366 31.1
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 2.9e-27 127.1 361 31.6
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 2.9e-27 127.1 143 47.6
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 3.8e-27 126.7 359 30.9
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 6.4e-27 125.9 382 28.8
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 1.1e-26 125.2 148 49.3
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 3.2e-26 123.6 121 51.2
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.6e-25 121.3 382 33.0
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 2.1e-25 120.9 383 31.3
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 2.7e-25 120.6 367 31.3
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 3.5e-25 120.2 382 31.7
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 6.0e-25 119.4 390 29.7
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 7.8e-25 119.0 119 50.4
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 1.0e-24 118.6 121 52.1
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 1.7e-24 117.9 144 45.8
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 2.3e-24 117.5 240 35.0
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 3.9e-24 116.7 375 30.4
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.1e-23 115.2 119 48.7
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.1e-23 115.2 119 48.7
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.1e-23 115.2 417 29.0
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 1.1e-23 115.2 353 32.6
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 1.9e-23 114.4 374 29.1
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 1.9e-23 114.4 164 40.9
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 3.3e-23 113.6 147 41.5
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 7.3e-23 112.5 186 38.2
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.6e-22 111.3 361 31.3
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 6.2e-22 109.4 124 48.4
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 8.1e-22 109.0 422 29.4
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 4.0e-21 106.7 412 29.1
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.6e-20 104.0 298 33.2
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 7.6e-20 102.4 192 37.0
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.3e-19 101.7 355 31.3
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 9.3e-18 95.5 358 30.2
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 2.7e-17 94.0 118 44.9
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 3.5e-17 93.6 130 46.2
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 1.7e-16 91.3 97 49.5
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 3.3e-15 87.0 382 27.0
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 6.2e-14 82.8 289 32.2
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.1e-13 82.0 280 30.7
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 1.4e-13 81.6 144 38.2
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 5.3e-13 79.7 90 47.8
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 2.2e-11 74.3 278 28.1
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 3.5e-09 67.0 91 39.6
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 6.0e-09 66.2 368 26.6
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 6.0e-09 66.2 103 42.7
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 1.8e-08 64.7 215 31.2
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 1.8e-08 64.7 131 32.8
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 2.5e-07 60.8 383 26.1
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 4.3e-07 60.1 136 33.1
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 3.7e-06 57.0 113 33.6
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 6.2e-06 56.2 120 32.5


User provided reference genes

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