Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 0.0e+00 1110.9 614 100.0
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 8.3e-234 813.9 631 78.9
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 5.1e-191 671.8 631 66.9
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 2.0e-163 580.1 390 83.3
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.5e-155 553.9 656 54.7
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 2.9e-154 549.7 645 55.2
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 4.2e-153 545.8 651 55.1
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 5.5e-153 545.4 633 58.5
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.6e-152 542.7 643 56.5
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 3.6e-152 542.7 662 53.6
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 7.9e-152 541.6 647 54.4
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.5e-150 537.3 658 53.0
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 2.8e-149 533.1 666 52.4
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 4.8e-149 532.3 689 51.5
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 6.3e-149 531.9 498 63.3
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 6.3e-149 531.9 642 57.2
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 6.3e-149 531.9 689 50.9
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 1.4e-148 530.8 655 53.9
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.3e-148 528.9 642 56.1
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 2.0e-147 526.9 715 49.5
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.6e-147 526.6 659 55.7
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 3.4e-147 526.2 649 53.8
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 2.9e-146 523.1 678 51.3
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 8.5e-146 521.5 647 53.9
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.1e-145 521.2 568 59.3
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.9e-145 520.4 647 54.1
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 9.4e-145 518.1 654 54.3
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 1.6e-144 517.3 692 50.0
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 2.6e-142 510.0 624 52.2
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 5.7e-142 508.8 669 51.6
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 3.7e-141 506.1 655 50.5
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 5.3e-140 502.3 656 52.0
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 4.5e-139 499.2 661 51.1
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 1.0e-138 498.0 690 49.6
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 1.9e-137 493.8 666 49.7
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 2.5e-137 493.4 667 51.1
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 2.5e-137 493.4 658 51.1
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 2.1e-136 490.3 677 49.8
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.0e-135 488.0 676 50.0
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 1.4e-135 487.6 338 76.9
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 2.3e-135 486.9 679 48.3
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 2.3e-135 486.9 655 49.8
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 4.4e-134 482.6 664 48.2
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 5.7e-134 482.3 660 49.1
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 5.7e-134 482.3 660 48.0
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 1.3e-133 481.1 596 51.3
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 2.2e-133 480.3 656 49.2
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 2.8e-133 479.9 666 47.0
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.4e-132 477.6 639 48.8
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 1.4e-132 477.6 671 49.8
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 2.4e-132 476.9 654 49.7
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 4.1e-132 476.1 626 49.0
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 5.3e-132 475.7 669 48.9
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 5.3e-132 475.7 451 61.2
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 7.0e-132 475.3 583 52.0
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 7.0e-132 475.3 661 49.8
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 1.2e-131 474.6 654 49.8
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 7.7e-131 471.9 396 65.9
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 1.3e-130 471.1 658 47.4
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 1.3e-130 471.1 653 50.4
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 1.5e-129 467.6 523 56.4
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 5.5e-129 465.7 585 51.3
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 9.4e-129 464.9 665 48.4
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 9.4e-129 464.9 579 51.8
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 4.7e-128 462.6 577 51.6
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 4.7e-128 462.6 670 48.7
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 4.7e-128 462.6 345 72.5
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 6.8e-127 458.8 575 52.2
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 1.5e-126 457.6 576 52.3
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 3.4e-126 456.4 601 51.4
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 2.2e-125 453.8 673 47.1
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 4.8e-125 452.6 658 48.0
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 3.1e-124 449.9 654 48.0
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 4.1e-124 449.5 675 46.1
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 4.1e-124 449.5 665 46.0
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 9.1e-124 448.4 578 51.9
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 2.7e-123 446.8 651 47.9
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 1.0e-122 444.9 716 46.2
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 1.3e-122 444.5 609 49.9
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 1.7e-122 444.1 628 48.6
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 1.5e-121 441.0 603 47.9
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 2.3e-119 433.7 624 47.3
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 2.6e-118 430.3 664 45.8
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 5.7e-118 429.1 680 44.3
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 1.3e-117 427.9 738 43.2
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 1.7e-117 427.6 644 45.3
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 1.7e-117 427.6 653 46.7
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 1.8e-116 424.1 653 46.9
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 4.1e-116 422.9 589 48.6
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 1.2e-115 421.4 593 48.4
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 1.0e-111 408.3 651 45.2
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 2.3e-111 407.1 607 46.5
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.4e-108 397.9 610 46.1
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.7e-106 391.0 497 50.9
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 6.1e-104 382.5 652 43.4
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 6.4e-101 372.5 369 59.1
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.1e-100 371.7 369 59.1
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 3.0e-98 363.6 496 47.8
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.1e-96 357.5 383 53.0
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 2.2e-93 347.4 523 45.9
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 8.3e-93 345.5 649 40.1
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 4.4e-86 323.2 632 41.5
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 2.7e-83 313.9 649 39.1
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 6.4e-61 239.6 274 52.9
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 1.9e-60 238.0 362 44.2
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 7.1e-60 236.1 218 59.6
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 3.4e-54 217.2 287 47.4
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 2.2e-53 214.5 520 33.7
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.5e-52 211.1 407 43.2
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 6.7e-50 203.0 520 33.8
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 8.7e-50 202.6 434 34.6
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 5.7e-49 199.9 125 77.6
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 2.9e-45 187.6 225 52.4
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 7.2e-44 183.0 610 28.4
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 6.1e-43 179.9 531 32.0
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 8.7e-42 176.0 112 77.7
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 7.4e-41 172.9 118 72.0
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 1.4e-39 168.7 193 50.8
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 1.8e-39 168.3 437 35.0
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 2.4e-39 167.9 118 70.3
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 5.0e-37 160.2 111 73.9
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 9.4e-36 156.0 112 73.2
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 9.4e-36 156.0 113 71.7
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 3.7e-32 144.1 141 61.7
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 8.2e-32 142.9 451 33.0
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 3.1e-31 141.0 89 77.5
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 7.7e-30 136.3 140 60.0
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 1.7e-29 135.2 141 58.9
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 5.5e-28 130.2 90 73.3
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 4.7e-27 127.1 93 72.0
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 6.7e-26 123.2 110 52.7
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.5e-25 122.1 239 35.1
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 5.9e-22 110.2 339 27.4
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 7.7e-22 109.8 328 34.5
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 5.5e-20 103.6 80 70.0
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 7.2e-12 76.6 63 63.5
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 2.1e-11 75.1 377 26.5
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 3.1e-07 61.2 54 55.6
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 5.4e-07 60.5 46 58.7
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 9.1e-07 59.7 45 60.0
BraA01t00065Z Brassica rapa HOM05D004921 ORTHO05D006008 3.5e-06 57.8 76 47.4


User provided reference genes

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