Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1019300 Malus domestica HOM05D006515 ORTHO05D008125 2.6e-65 251.9 125 100.0
MD15G1333200 Malus domestica HOM05D006515 ORTHO05D008125 5.2e-34 147.9 117 72.6
Haze_25038 Corylus avellana HOM05D006515 ORTHO05D008125 2.6e-33 145.6 117 70.9
FvH4_1g22260 Fragaria vesca HOM05D006515 ORTHO05D008125 3.4e-33 145.2 117 70.1
FAN19G0752 Fragaria x ananassa HOM05D006515 ORTHO05D008125 3.4e-33 145.2 117 70.1
Prupe.6G173100 Prunus persica HOM05D006515 ORTHO05D008125 9.8e-33 143.7 117 70.9
FAN28G2568 Fragaria x ananassa HOM05D006515 ORTHO05D008125 1.3e-32 143.3 117 68.4
QL06p032194 Quercus lobata HOM05D006515 ORTHO05D008125 1.3e-32 143.3 116 70.7
Lsat_1_v5_gn_1_15020 Lactuca sativa HOM05D006515 ORTHO05D008125 1.7e-32 142.9 116 70.7
Duzib264G0250 Durio zibethinus HOM05D006515 ORTHO05D008125 2.2e-32 142.5 117 70.1
Duzib264G0715 Durio zibethinus HOM05D006515 ORTHO05D008125 2.2e-32 142.5 117 70.1
Potri.005G084400 Populus trichocarpa HOM05D006515 ORTHO05D008125 2.2e-32 142.5 117 68.4
Cpa.g.sc196.13 Carica papaya HOM05D006515 ORTHO05D008125 3.7e-32 141.7 117 68.4
Cfa002752 Carpinus fangiana HOM05D006515 ORTHO05D008125 3.7e-32 141.7 117 70.1
Nn5g28914 Nelumbo nucifera HOM05D006515 ORTHO05D008125 3.7e-32 141.7 117 68.4
Dinv19488 Davidia involucrata HOM05D006515 ORTHO05D008125 4.9e-32 141.4 117 70.1
Actinidia28893 Actinidia chinensis HOM05D006515 ORTHO05D008125 6.3e-32 141.0 117 68.4
CiPaw.04G091900 Carya illinoinensis HOM05D006515 ORTHO05D008125 6.3e-32 141.0 117 68.4
Gorai.003G047200 Gossypium raimondii HOM05D006515 ORTHO05D008125 8.3e-32 140.6 117 69.2
GSVIVG01022225001 Vitis vinifera HOM05D006515 ORTHO05D008125 1.1e-31 140.2 115 69.6
CSS0013135 Camellia sinensis var. sinensis HOM05D006515 ORTHO05D008125 1.8e-31 139.4 117 68.4
Gohir.D03G046000 Gossypium hirsutum HOM05D006515 ORTHO05D008125 2.4e-31 139.0 117 68.4
Peaxi162Scf00133g01415 Petunia axillaris HOM05D006515 ORTHO05D008125 2.4e-31 139.0 117 68.4
Nitab4.5_0000431g0160 Nicotiana tabacum HOM05D006515 ORTHO05D008125 3.1e-31 138.7 117 67.5
RcHm_v2.0_Chr2g0116401 Rosa chinensis HOM05D006515 ORTHO05D008125 3.1e-31 138.7 117 68.4
TWI74G0473 Tripterygium wilfordii HOM05D006515 ORTHO05D008125 3.1e-31 138.7 117 69.2
TAR628G1388 Trochodendron aralioides HOM05D006515 ORTHO05D008125 3.1e-31 138.7 117 68.4
CSS0008392 Camellia sinensis var. sinensis HOM05D006515 ORTHO05D008125 4.1e-31 138.3 117 67.5
CAN.G1056.2 Capsicum annuum HOM05D006515 ORTHO05D008125 5.4e-31 137.9 117 67.5
PGSC0003DMG400023598 Solanum tuberosum HOM05D006515 ORTHO05D008125 5.4e-31 137.9 117 67.5
FAN23G2782 Fragaria x ananassa HOM05D006515 ORTHO05D008125 7.0e-31 137.5 118 67.8
THA.LOC104807722 Tarenaya hassleriana HOM05D006515 ORTHO05D008125 9.2e-31 137.1 117 65.8
COL.COLO4_11014 Corchorus olitorius HOM05D006515 ORTHO05D008125 1.6e-30 136.3 117 65.8
ECA238G1556 Erigeron canadensis HOM05D006515 ORTHO05D008125 1.6e-30 136.3 115 67.8
MBI02_g20709_MAGBIO Magnolia biondii HOM05D006515 ORTHO05D008125 1.6e-30 136.3 117 65.8
MBI02_g45733_MAGBIO Magnolia biondii HOM05D006515 ORTHO05D008125 1.6e-30 136.3 117 65.8
ClCG02G013380 Citrullus lanatus HOM05D006515 ORTHO05D008125 2.0e-30 136.0 117 67.5
Cc07_g16230 Coffea canephora HOM05D006515 ORTHO05D008125 2.0e-30 136.0 117 65.8
Rhsim08G0006500 Rhododendron simsii HOM05D006515 ORTHO05D008125 2.0e-30 136.0 117 65.8
Sopen04g006040 Solanum pennellii HOM05D006515 ORTHO05D008125 2.0e-30 136.0 117 66.7
CANSAT01G1885 Cannabis sativa HOM05D006515 ORTHO05D008125 2.7e-30 135.6 117 65.8
CSS0014645 Camellia sinensis var. sinensis HOM05D006515 ORTHO05D008125 3.5e-30 135.2 117 65.8
Manes.12G142600 Manihot esculenta HOM05D006515 ORTHO05D008125 3.5e-30 135.2 117 66.7
vmacro18632 Vaccinium macrocarpon HOM05D006515 ORTHO05D008125 3.5e-30 135.2 116 67.2
MELO3C020948.2 Cucumis melo HOM05D006515 ORTHO05D008125 4.5e-30 134.8 117 66.7
CsaV3_2G017540 Cucumis sativus L. HOM05D006515 ORTHO05D008125 4.5e-30 134.8 117 66.7
Solyc04g011900.4 Solanum lycopersicum HOM05D006515 ORTHO05D008125 4.5e-30 134.8 117 65.8
Oeu028372.3 Olea europaea HOM05D006515 ORTHO05D008125 5.9e-30 134.4 115 65.2
Atru.chr4.394 Acer truncatum HOM05D006515 ORTHO05D008125 1.3e-29 133.3 117 65.8
Eucgr.I00323 Eucalyptus grandis HOM05D006515 ORTHO05D008125 2.3e-29 132.5 117 65.8
Thecc.01G112600 Theobroma cacao HOM05D006515 ORTHO05D008125 2.3e-29 132.5 117 66.7
Migut.H02429 Erythranthe guttata HOM05D006515 ORTHO05D008125 2.9e-29 132.1 115 64.3
SalBow6G3287 Salvia bowleyana HOM05D006515 ORTHO05D008125 2.9e-29 132.1 115 66.1
Ciclev10026110m.g Citrus clementina HOM05D006515 ORTHO05D008125 3.8e-29 131.7 117 65.8
HanXRQChr15g0484391 Helianthus annuus HOM05D006515 ORTHO05D008125 3.8e-29 131.7 116 63.8
unitig_899.g15001 Utricularia gibba HOM05D006515 ORTHO05D008125 3.8e-29 131.7 117 63.2
ATR0564G276 Amborella trichopoda HOM05D000080 ORTHO05D008125 1.9e-28 129.4 117 63.2
PSO541G0558 Papaver somniferum HOM05D006515 ORTHO05D008125 1.9e-28 129.4 117 63.2
arahy.Tifrunner.gnm1.ann1.L5WCB3 Arachis hypogaea HOM05D006515 ORTHO05D008125 2.5e-28 129.0 117 63.2
arahy.Tifrunner.gnm1.ann1.M7EXEZ Arachis hypogaea HOM05D006515 ORTHO05D008125 2.5e-28 129.0 117 63.2
PSO675G2678 Papaver somniferum HOM05D006515 ORTHO05D008125 2.5e-28 129.0 117 63.2
Ca_17696_v3 Cicer arietinum L. HOM05D006515 ORTHO05D008125 3.3e-28 128.6 117 62.4
Lalb_Chr12g0203541 Lupinus albus HOM05D006515 ORTHO05D008125 3.3e-28 128.6 117 63.2
Rhsim08G0007200 Rhododendron simsii HOM05D006515 ORTHO05D008125 3.3e-28 128.6 136 56.6
TPR.G2156 Trifolium pratense HOM05D006515 ORTHO05D008125 3.3e-28 128.6 116 62.9
Carub.0004s0110 Capsella rubella HOM05D006515 ORTHO05D008125 5.6e-28 127.9 117 63.2
CARHR113040 Cardamine hirsuta HOM05D006515 ORTHO05D008125 7.3e-28 127.5 117 62.4
Sp4g01040 Schrenkiella parvula HOM05D006515 ORTHO05D008125 7.3e-28 127.5 117 63.2
VMungo0251G1698 Vigna mungo HOM05D006515 ORTHO05D008125 7.3e-28 127.5 117 63.2
Glyma.05G183600 Glycine max HOM05D006515 ORTHO05D008125 9.5e-28 127.1 117 64.1
Phvul.002G264700 Phaseolus vulgaris HOM05D006515 ORTHO05D008125 9.5e-28 127.1 117 63.2
Zm00001eb069020 Zea mays HOM05D006515 ORTHO05D008125 9.5e-28 127.1 117 63.2
EL10Ac6g14754 Beta vulgaris HOM05D006515 ORTHO05D008125 1.2e-27 126.7 115 62.6
CDE04G2335 Ceratophyllum demersum HOM05D006515 ORTHO05D008125 1.2e-27 126.7 117 60.7
Psat7g051400 Pisum sativum HOM05D006515 ORTHO05D008125 1.2e-27 126.7 117 61.5
Sabra05G0069400 Salix brachista HOM05D006515 ORTHO05D008125 1.6e-27 126.3 108 66.7
BcaB06g27799 Brassica carinata HOM05D006515 ORTHO05D008125 2.8e-27 125.6 117 61.5
DCAR_010076 Daucus carota HOM05D006515 ORTHO05D008125 2.8e-27 125.6 117 64.1
BcaC02g08749 Brassica carinata HOM05D006515 ORTHO05D008125 3.6e-27 125.2 117 61.5
A04p16560 Brassica napus HOM05D006515 ORTHO05D008125 3.6e-27 125.2 117 61.5
C04p51080 Brassica napus HOM05D006515 ORTHO05D008125 3.6e-27 125.2 117 61.5
BolC4t26701H Brassica oleracea HOM05D006515 ORTHO05D008125 3.6e-27 125.2 117 61.5
BraA04t17291Z Brassica rapa HOM05D006515 ORTHO05D008125 3.6e-27 125.2 117 61.5
Thhalv10000230m.g Eutrema salsugineum HOM05D006515 ORTHO05D008125 4.7e-27 124.8 117 61.5
Glyma.08G141400 Glycine max HOM05D006515 ORTHO05D008125 4.7e-27 124.8 117 62.4
Aa31LG7G14680 Aethionema arabicum HOM05D006515 ORTHO05D008125 8.0e-27 124.0 117 61.5
Gohir.A02G135100 Gossypium hirsutum HOM05D006515 ORTHO05D008125 8.0e-27 124.0 107 67.3
Os04g0639300 Oryza sativa ssp. japonica HOM05D006515 ORTHO05D008125 1.8e-26 122.9 117 60.7
AUR62016278 Chenopodium quinoa HOM05D006515 ORTHO05D008125 2.3e-26 122.5 117 59.8
Aqoxy6G00481 Aquilegia oxysepala HOM05D006515 ORTHO05D008125 3.0e-26 122.1 117 59.8
AL4G11280 Arabidopsis lyrata HOM05D006515 ORTHO05D008125 4.0e-26 121.7 117 59.8
AT2G21960 Arabidopsis thaliana HOM05D006515 ORTHO05D008125 4.0e-26 121.7 117 59.8
AUR62003307 Chenopodium quinoa HOM05D006515 ORTHO05D008125 4.0e-26 121.7 107 62.6
Nitab4.5_0013619g0010 Nicotiana tabacum HOM05D005315 ORTHO05D008125 2.0e-25 119.4 105 64.8
MSTRG.2534 Avicennia marina HOM05D006515 ORTHO05D008125 3.4e-25 118.6 116 61.2
Lj4g0022266 Lotus japonicus HOM05D006515 ORTHO05D008125 5.8e-25 117.9 116 57.8
HPP92_004318 Vanilla planifolia HOM05D006515 ORTHO05D008125 9.8e-25 117.1 116 56.9
Mapoly0125s0032 Marchantia polymorpha HOM05D006515 ORTHO05D008125 2.2e-24 115.9 115 56.5
Hund19656 Selenicereus undatus HOM05D006515 ORTHO05D008125 7.0e-23 110.9 140 48.6
Lj4A877G29 Lonicera japonica HOM05D006515 ORTHO05D008125 2.0e-22 109.4 112 58.9
AagrBONN_evm.TU.Sc2ySwM_344.4911 Anthoceros agrestis HOM05D006515 ORTHO05D008125 2.5e-20 102.4 114 50.9
SMO356G0225 Selaginella moellendorffii HOM05D006515 ORTHO05D008125 9.5e-20 100.5 113 51.3
Sed0016096 Sechium edule HOM05D006515 ORTHO05D008125 1.2e-17 93.6 59 81.4
PGR004G2121 Punica granatum HOM05D006515 ORTHO05D008125 2.0e-17 92.8 55 87.3
CSS0007670 Camellia sinensis var. sinensis HOM05D006515 ORTHO05D008125 4.4e-17 91.7 55 85.5
Sc07g0001530 Simmondsia chinensis HOM05D006515 ORTHO05D008125 9.8e-17 90.5 55 85.5
Pp3c15_14640 Physcomitrium patens HOM05D006515 ORTHO05D008125 6.4e-16 87.8 115 49.6
TPR.G34384 Trifolium pratense HOM05D006515 ORTHO05D008125 5.4e-15 84.7 52 82.7
HPP92_004304 Vanilla planifolia HOM05D006515 ORTHO05D008125 2.7e-14 82.4 71 63.4
Ah.02g125970 Amaranthus hybridus HOM05D006515 ORTHO05D008125 1.9e-12 76.3 103 48.5
PRCOL_00002642 Prasinoderma coloniale HOM05D006515 ORTHO05D008125 4.0e-10 68.6 115 40.0
Cre08.g379175 Chlamydomonas reinhardtii HOM05D006515 ORTHO05D008125 5.2e-10 68.2 115 34.8
Cre08.g379200 Chlamydomonas reinhardtii HOM05D006515 ORTHO05D008125 5.2e-10 68.2 115 34.8
SGA_v2.0_scaffold51G18748 Striga asiatica HOM05D006515 ORTHO05D008125 2.7e-06 55.8 37 70.3


User provided reference genes

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