Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 5.6e-104 380.9 193 100.0
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 2.2e-76 289.3 199 76.9
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 6.5e-76 287.7 199 78.4
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 6.5e-76 287.7 199 78.4
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 8.5e-76 287.3 199 78.4
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 2.5e-75 285.8 200 77.0
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 3.2e-75 285.4 199 77.4
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 3.2e-75 285.4 199 77.9
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 3.2e-75 285.4 196 78.6
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 4.2e-75 285.0 198 77.3
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 1.6e-74 283.1 195 77.4
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 2.1e-74 282.7 199 76.9
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 2.7e-74 282.3 200 76.0
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 2.7e-74 282.3 194 76.3
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 4.6e-74 281.6 197 77.7
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 7.9e-74 280.8 178 80.9
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 1.4e-73 280.0 195 77.4
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 1.4e-73 280.0 196 77.0
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 1.8e-73 279.6 198 75.3
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 2.3e-73 279.3 195 77.4
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 2.3e-73 279.3 195 77.4
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 3.0e-73 278.9 195 73.8
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 3.9e-73 278.5 201 75.1
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 5.1e-73 278.1 196 76.5
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 5.1e-73 278.1 197 74.6
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 6.7e-73 277.7 196 75.5
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 6.7e-73 277.7 176 81.2
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 8.8e-73 277.3 199 74.9
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 8.8e-73 277.3 200 75.0
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 1.1e-72 276.9 201 74.1
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 1.5e-72 276.6 179 78.8
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 1.5e-72 276.6 202 74.8
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 2.0e-72 276.2 194 73.7
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 2.5e-72 275.8 198 74.7
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 4.3e-72 275.0 197 75.1
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 5.7e-72 274.6 197 74.1
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 9.7e-72 273.9 196 76.5
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 1.7e-71 273.1 199 72.4
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 2.2e-71 272.7 197 76.1
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 2.8e-71 272.3 197 74.6
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 2.8e-71 272.3 200 73.0
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 2.8e-71 272.3 199 74.4
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 6.3e-71 271.2 178 79.8
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 8.2e-71 270.8 194 74.7
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 8.2e-71 270.8 194 74.7
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 8.2e-71 270.8 194 74.7
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 8.2e-71 270.8 203 71.9
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 1.1e-70 270.4 200 72.5
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 3.1e-70 268.9 195 72.3
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 9.1e-70 267.3 189 72.5
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 2.0e-69 266.2 196 72.4
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 2.6e-69 265.8 196 72.4
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 4.5e-69 265.0 181 76.8
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 4.5e-69 265.0 195 71.8
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 7.7e-69 264.2 196 73.0
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 1.0e-68 263.8 196 71.9
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 1.7e-68 263.1 190 73.7
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 2.2e-68 262.7 196 71.4
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 1.1e-67 260.4 175 76.0
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 3.2e-67 258.8 196 71.9
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 4.2e-67 258.5 175 76.6
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 4.2e-67 258.5 175 76.6
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 5.5e-67 258.1 175 76.0
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 9.4e-67 257.3 175 73.1
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 2.1e-66 256.1 201 67.7
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 2.7e-66 255.8 182 74.2
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 2.7e-66 255.8 193 69.9
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 4.7e-66 255.0 168 78.0
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 1.4e-65 253.4 186 69.9
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 8.8e-65 250.8 204 65.2
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 8.8e-65 250.8 175 70.9
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 1.1e-64 250.4 180 72.2
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 1.5e-64 250.0 204 65.2
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 1.5e-64 250.0 204 65.2
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 1.5e-64 250.0 204 65.2
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 3.7e-63 245.4 175 71.4
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 4.8e-63 245.0 190 66.8
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 6.3e-63 244.6 210 63.3
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 1.1e-62 243.8 196 68.9
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 1.4e-62 243.4 205 63.4
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 1.4e-62 243.4 207 63.3
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 1.4e-62 243.4 207 63.3
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 2.4e-62 242.7 183 67.8
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 2.4e-62 242.7 183 67.8
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 2.4e-62 242.7 183 68.3
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 1.2e-61 240.4 171 71.9
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 2.0e-61 239.6 173 70.5
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 4.5e-61 238.4 190 65.3
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 4.5e-61 238.4 191 64.9
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 4.5e-61 238.4 191 64.9
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 7.7e-61 237.7 175 69.7
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 3.8e-60 235.3 195 68.2
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 9.4e-59 230.7 210 60.5
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 1.1e-56 223.8 151 74.8
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 8.2e-55 217.6 177 65.5
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 1.8e-54 216.5 146 74.7
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 2.0e-53 213.0 175 66.3
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 2.7e-50 202.6 175 62.9
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 6.1e-50 201.4 142 71.1
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 1.6e-45 186.8 143 67.1
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 1.6e-45 186.8 175 54.9
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 6.1e-42 174.9 197 48.2
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 5.2e-41 171.8 173 50.3
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 2.0e-37 159.8 173 49.7
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 1.0e-36 157.5 107 74.8
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 1.7e-36 156.8 106 74.5
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.8e-36 155.6 173 51.4
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 8.9e-33 144.4 98 73.5
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 5.9e-29 131.7 175 46.9
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 6.6e-28 128.3 123 53.7
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 7.8e-21 104.8 131 47.3
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 5.6e-19 98.6 65 75.4
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.3e-12 77.4 67 62.7
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 8.1e-10 68.2 40 80.0
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 1.8e-09 67.0 75 48.0
Nn8g39713 Nelumbo nucifera HOM05D006880 ORTHO05D008638 7.1e-06 55.1 33 72.7


User provided reference genes

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