Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 1.0e-109 400.2 217 100.0
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 9.5e-68 260.8 192 80.7
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 4.3e-60 235.3 191 73.8
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 7.6e-57 224.6 193 71.5
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 4.2e-55 218.8 193 69.4
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 5.3e-50 201.8 193 68.4
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 5.3e-50 201.8 201 59.2
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 2.6e-49 199.5 193 68.4
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 2.6e-49 199.5 193 68.4
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 9.3e-47 191.0 190 62.6
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 1.6e-46 190.3 184 59.2
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 2.7e-46 189.5 199 57.8
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 6.0e-46 188.3 201 63.7
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 7.9e-46 188.0 192 56.8
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.0e-45 187.6 193 65.8
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.8e-45 186.8 193 66.3
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 1.5e-44 183.7 196 56.6
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 2.5e-44 183.0 194 63.4
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 5.6e-44 181.8 196 56.1
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 7.4e-44 181.4 185 56.2
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 9.6e-44 181.0 190 60.0
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 4.8e-43 178.7 192 57.3
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 8.1e-43 177.9 200 56.5
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 6.9e-42 174.9 204 54.9
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 2.0e-41 173.3 198 63.1
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 3.4e-41 172.6 190 56.3
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 3.4e-41 172.6 196 63.3
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 9.9e-41 171.0 194 58.8
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 1.7e-40 170.2 196 55.6
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 2.2e-40 169.9 190 58.9
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 2.2e-40 169.9 194 58.2
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 1.1e-39 167.5 190 57.9
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 1.9e-39 166.8 201 59.2
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 3.2e-39 166.0 191 58.1
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 5.5e-39 165.2 191 54.5
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 7.1e-39 164.9 194 58.8
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 2.7e-38 162.9 192 50.5
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 4.6e-38 162.2 195 56.4
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 6.0e-38 161.8 195 56.4
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 6.0e-38 161.8 190 54.7
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 1.8e-37 160.2 198 56.6
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 2.3e-37 159.8 189 60.8
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 3.0e-37 159.5 190 51.1
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 3.0e-37 159.5 190 51.1
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 3.0e-37 159.5 191 58.1
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 1.5e-36 157.1 193 52.3
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 1.9e-36 156.8 191 53.9
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 5.6e-36 155.2 207 54.6
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 9.6e-36 154.5 207 52.7
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 9.6e-36 154.5 191 56.0
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 1.6e-35 153.7 191 51.3
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 3.7e-35 152.5 188 57.4
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 2.4e-34 149.8 197 52.8
Cc04_g06140 Coffea canephora HOM05D006794 ORTHO05D008322 1.2e-33 147.5 194 49.0
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 5.8e-33 145.2 197 52.3
PGSC0003DMG400005675 Solanum tuberosum HOM05D006794 ORTHO05D008322 2.2e-32 143.3 196 51.0
Sopen03g037580 Solanum pennellii HOM05D006794 ORTHO05D008322 1.4e-31 140.6 192 46.9
Solyc03g118630.3 Solanum lycopersicum HOM05D006794 ORTHO05D008322 1.9e-31 140.2 192 46.9
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 1.9e-31 140.2 194 47.4
Migut.D01320 Erythranthe guttata HOM05D006794 ORTHO05D008322 4.2e-31 139.0 181 48.1
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 7.1e-31 138.3 190 45.3
Nitab4.5_0001264g0020 Nicotiana tabacum HOM05D006794 ORTHO05D008322 7.9e-30 134.8 197 49.7
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 3.9e-29 132.5 207 42.0
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 6.7e-29 131.7 207 41.5
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 8.7e-29 131.3 167 54.5
MELO3C002138.2 Cucumis melo HOM05D006794 ORTHO05D008322 1.9e-28 130.2 153 54.2
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 2.5e-28 129.8 191 45.5
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 3.7e-27 125.9 208 44.2
Lsat_1_v5_gn_5_175480 Lactuca sativa HOM05D006794 ORTHO05D008322 8.2e-27 124.8 200 46.5
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 3.1e-26 122.9 199 48.2
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 5.3e-26 122.1 170 51.2
BcaC09g48759 Brassica carinata HOM05D006794 ORTHO05D008322 3.4e-25 119.4 210 43.3
C01p46200 Brassica napus HOM05D006794 ORTHO05D008322 3.4e-25 119.4 210 43.3
BolC1t04582H Brassica oleracea HOM05D006794 ORTHO05D008322 3.4e-25 119.4 210 43.3
vmacro16409 Vaccinium macrocarpon HOM05D006794 ORTHO05D008322 2.9e-24 116.3 175 47.4
Gohir.A12G269600 Gossypium hirsutum HOM05D006794 ORTHO05D008322 3.8e-24 115.9 167 46.7
COL.COLO4_04996 Corchorus olitorius HOM05D006794 ORTHO05D008322 1.9e-23 113.6 166 51.2
HPP92_008000 Vanilla planifolia HOM05D006794 ORTHO05D008322 4.2e-23 112.5 193 47.7
Gohir.D12G270100 Gossypium hirsutum HOM05D006794 ORTHO05D008322 5.5e-23 112.1 167 45.5
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 7.2e-23 111.7 198 42.4
DCAR_013026 Daucus carota HOM05D006794 ORTHO05D008322 1.2e-22 110.9 192 47.4
BcaB04g18974 Brassica carinata HOM05D006794 ORTHO05D008322 2.7e-22 109.8 223 40.8
A03p40470 Brassica napus HOM05D006794 ORTHO05D008322 7.9e-22 108.2 211 42.7
AL3G31120 Arabidopsis lyrata HOM05D006794 ORTHO05D008322 1.3e-21 107.5 204 48.5
Ca_25344_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 2.3e-21 106.7 154 46.8
BcaC01g03720 Brassica carinata HOM05D006794 ORTHO05D008322 5.1e-21 105.5 211 41.7
Ca_17183_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 5.1e-21 105.5 148 45.3
C03p49310 Brassica napus HOM05D006794 ORTHO05D008322 1.5e-20 104.0 211 41.2
CANSAT64G0030 Cannabis sativa HOM05D006794 ORTHO05D008322 2.5e-20 103.2 153 43.8
Carub.0003s1768 Capsella rubella HOM05D006794 ORTHO05D008322 3.3e-20 102.8 206 44.2
Glyma.07G103100 Glycine max HOM05D006794 ORTHO05D008322 7.4e-20 101.7 157 50.3
Psat1g031080 Pisum sativum HOM05D006794 ORTHO05D008322 1.6e-19 100.5 156 43.6
Thhalv10021515m.g Eutrema salsugineum HOM05D006794 ORTHO05D008322 2.8e-19 99.8 209 45.9
Sabra12G0031800 Salix brachista HOM05D006794 ORTHO05D008322 4.8e-19 99.0 159 54.7
BcaB04g20803 Brassica carinata HOM05D006794 ORTHO05D008322 1.1e-18 97.8 203 46.3
BraA01t03709Z Brassica rapa HOM05D006794 ORTHO05D008322 9.1e-18 94.7 204 45.1
SalBow1G0629 Salvia bowleyana HOM05D006794 ORTHO05D008322 1.2e-17 94.4 169 43.8
ECA248G0187 Erigeron canadensis HOM05D006794 ORTHO05D008322 1.5e-17 94.0 206 41.7
CDE05G2986 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 1.7e-16 90.5 156 41.7
A01p36460 Brassica napus HOM05D006794 ORTHO05D008322 1.1e-15 87.8 207 44.9
Nn2g15270 Nelumbo nucifera HOM05D006794 ORTHO05D008322 1.4e-15 87.4 114 47.4
Nitab4.5_0010223g0030 Nicotiana tabacum HOM05D006794 ORTHO05D008322 1.2e-14 84.3 199 40.2
Aa31LG8G4820 Aethionema arabicum HOM05D006794 ORTHO05D008322 1.6e-14 84.0 184 40.8
Ciclev10009814m.g Citrus clementina HOM05D006794 ORTHO05D008322 3.9e-13 79.3 142 41.5
Os02g0733400 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 2.6e-12 76.6 192 41.7
SGA_v2.0_scaffold172G39018 Striga asiatica HOM05D006794 ORTHO05D008322 5.7e-12 75.5 128 41.4
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 2.8e-11 73.2 196 34.7
Peaxi162Scf00314g00315 Petunia axillaris HOM05D006794 ORTHO05D008322 4.8e-11 72.4 95 47.4
CARHR093280 Cardamine hirsuta HOM05D006794 ORTHO05D008322 1.4e-10 70.9 186 41.9
Oeu004474.1 Olea europaea HOM05D006794 ORTHO05D008322 2.4e-10 70.1 53 69.8
Zm00001eb190230 Zea mays HOM05D006794 ORTHO05D008322 3.1e-10 69.7 191 34.6
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 2.6e-09 66.6 173 31.8
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 2.6e-09 66.6 169 34.9
CDE07G1050 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 3.4e-09 66.2 40 90.0
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 5.9e-09 65.5 164 36.6
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 5.9e-09 65.5 164 36.6
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 5.9e-09 65.5 164 36.6
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 7.7e-09 65.1 179 32.4
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 7.7e-09 65.1 173 35.3
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 2.2e-08 63.5 202 34.7
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 2.9e-08 63.2 164 36.6
arahy.Tifrunner.gnm1.ann1.0C4VVF Arachis hypogaea HOM05D003527 ORTHO05D004099 6.5e-08 62.0 191 29.3
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 6.5e-08 62.0 166 31.3
VMungo0251G0268 Vigna mungo HOM05D006794 ORTHO05D008322 6.5e-08 62.0 63 46.0
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 8.5e-08 61.6 170 32.9
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 8.5e-08 61.6 172 34.3
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 1.4e-07 60.8 123 36.6
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.4e-07 60.8 175 33.7
AT3G17950 Arabidopsis thaliana HOM05D006794 ORTHO05D008322 1.9e-07 60.5 178 39.9
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 1.9e-07 60.5 193 31.6
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 1.9e-07 60.5 170 35.3
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 1.9e-07 60.5 163 33.1
arahy.Tifrunner.gnm1.ann1.QZ6FSS Arachis hypogaea HOM05D003527 ORTHO05D004099 3.2e-07 59.7 191 30.4
Os06g0256800 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 4.2e-07 59.3 111 47.7
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 4.2e-07 59.3 124 35.5
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 5.5e-07 58.9 170 34.7
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.5e-07 58.9 132 38.6
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 5.5e-07 58.9 163 35.0
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 9.4e-07 58.2 200 33.0
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.2e-06 57.8 170 32.9
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 1.2e-06 57.8 35 85.7
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 1.6e-06 57.4 130 36.9
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.6e-06 57.4 170 33.5
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.6e-06 57.4 170 32.9
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 2.7e-06 56.6 35 82.9
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 2.7e-06 56.6 36 77.8
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 2.7e-06 56.6 192 30.2
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 2.7e-06 56.6 125 36.8
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 2.7e-06 56.6 125 36.8
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 2.7e-06 56.6 35 82.9
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 2.7e-06 56.6 35 82.9
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 3.6e-06 56.2 35 82.9
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 3.6e-06 56.2 35 82.9
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 3.6e-06 56.2 35 80.0
Atru.chr8.1727 Acer truncatum HOM05D006794 ORTHO05D008322 4.7e-06 55.8 56 55.4
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 4.7e-06 55.8 165 29.7
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 4.7e-06 55.8 35 80.0
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 6.1e-06 55.5 174 31.6
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 7.9e-06 55.1 35 77.1
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 7.9e-06 55.1 36 72.2
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 7.9e-06 55.1 35 80.0
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 7.9e-06 55.1 35 80.0
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 7.9e-06 55.1 35 80.0
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 7.9e-06 55.1 35 80.0
Peaxi162Scf00832g00018 Petunia axillaris HOM05D003527 ORTHO05D004099 7.9e-06 55.1 149 32.2
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 7.9e-06 55.1 35 80.0
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 7.9e-06 55.1 35 80.0


User provided reference genes

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