Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 4.0e-229 797.7 401 100.0
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 1.6e-190 669.5 407 81.6
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 8.5e-179 630.6 406 77.8
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 2.2e-174 615.9 404 75.7
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.3e-171 606.7 419 73.0
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.1e-170 603.6 419 72.8
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 2.8e-166 589.0 408 71.1
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 2.4e-165 585.9 405 70.9
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 9.7e-159 563.9 412 66.7
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 1.3e-158 563.5 400 69.0
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 5.3e-157 558.1 403 67.2
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 7.0e-157 557.8 403 68.2
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 3.5e-156 555.4 403 68.0
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 2.2e-155 552.7 395 66.6
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 8.5e-155 550.8 404 65.8
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 1.5e-154 550.1 404 67.8
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 3.6e-153 545.4 404 67.6
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 6.8e-152 541.2 391 66.8
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 2.6e-151 539.3 405 64.9
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 7.5e-151 537.7 391 66.8
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.7e-150 535.4 392 67.1
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 6.3e-150 534.6 392 66.8
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 7.7e-148 527.7 459 59.3
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 2.2e-147 526.2 401 64.8
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 1.9e-146 523.1 400 65.0
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 2.5e-146 522.7 392 64.0
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 6.1e-145 518.1 404 65.3
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 9.8e-143 510.8 402 63.4
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 1.3e-142 510.4 401 63.6
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 2.8e-142 509.2 402 63.4
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 2.8e-142 509.2 405 63.2
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 4.9e-142 508.4 399 62.9
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 1.8e-141 506.5 409 61.4
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 3.1e-141 505.8 405 60.2
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 1.2e-140 503.8 402 62.7
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 2.7e-140 502.7 387 62.3
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 4.5e-140 501.9 402 62.7
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.0e-139 500.7 404 62.4
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 2.3e-139 499.6 399 59.6
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 6.6e-139 498.0 407 62.9
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 8.6e-139 497.7 408 59.1
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 3.3e-138 495.7 415 59.5
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 2.1e-137 493.0 396 60.6
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 3.6e-137 492.3 404 61.4
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 6.1e-137 491.5 405 59.8
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 6.1e-137 491.5 396 60.4
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 1.0e-136 490.7 383 63.2
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 4.0e-136 488.8 401 62.6
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 8.9e-136 487.6 403 58.8
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.2e-135 487.3 403 59.1
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 2.6e-135 486.1 405 58.5
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 4.4e-135 485.3 401 58.9
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 5.7e-135 485.0 396 59.1
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.7e-134 483.4 399 58.9
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 3.7e-134 482.3 398 61.6
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 6.4e-134 481.5 401 58.6
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 6.4e-134 481.5 404 59.9
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 2.4e-133 479.6 410 57.8
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 5.4e-133 478.4 393 59.3
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 2.0e-132 476.5 393 59.0
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 2.0e-132 476.5 402 58.5
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 5.9e-132 474.9 393 59.0
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 5.9e-132 474.9 401 57.6
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 2.3e-131 473.0 404 57.9
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 5.6e-130 468.4 399 57.1
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 1.6e-129 466.8 403 57.3
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 8.0e-129 464.5 404 55.7
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 5.2e-128 461.8 408 56.6
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 1.2e-127 460.7 415 55.7
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 3.4e-127 459.1 363 61.4
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 1.9e-125 453.4 404 55.7
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 4.6e-124 448.7 385 56.6
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 6.0e-124 448.4 325 67.7
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 6.0e-124 448.4 403 55.3
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 7.8e-124 448.0 407 56.5
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.7e-123 446.8 403 55.3
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 5.0e-123 445.3 398 55.8
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 7.3e-122 441.4 366 62.6
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 3.7e-118 429.1 383 55.9
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 2.4e-117 426.4 433 52.4
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 9.5e-114 414.5 346 59.8
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 2.3e-112 409.8 318 63.5
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 5.4e-109 398.7 392 52.0
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 1.1e-106 391.0 319 61.4
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 4.4e-103 379.0 326 59.8
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 5.8e-103 378.6 322 60.6
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 9.3e-101 371.3 449 47.0
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 1.2e-100 370.9 334 54.2
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 1.3e-99 367.5 398 49.5
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 6.6e-99 365.2 321 56.7
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.4e-93 346.7 261 67.4
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 2.8e-89 333.2 326 51.5
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 5.1e-75 285.8 207 64.7
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 2.7e-68 263.5 368 40.2
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 2.8e-65 253.4 464 33.6
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 4.8e-65 252.7 392 37.0
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 3.1e-64 250.0 473 35.1
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 4.2e-61 239.6 473 32.6
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 5.3e-56 222.6 211 52.6
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 9.1e-56 221.9 416 34.4
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 2.6e-55 220.3 416 34.4
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.7e-49 201.1 126 71.4
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 8.5e-46 188.7 408 33.1
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 6.5e-38 162.5 78 100.0
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 2.5e-37 160.6 131 55.0
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.3e-35 154.1 143 48.3
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 4.5e-31 139.8 303 31.0
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 4.7e-28 129.8 155 48.4
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 2.0e-26 124.4 77 72.7
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 7.0e-24 115.9 152 46.7
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 9.2e-24 115.5 248 31.0
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 2.3e-19 100.9 60 81.7
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.2e-16 90.5 59 66.1
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.4e-11 75.1 76 56.6
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 1.2e-10 72.0 46 76.1
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 1.3e-09 68.6 72 51.4
Nn7g37167 Nelumbo nucifera HOM05D006558 ORTHO05D008424 2.4e-08 64.3 46 73.9
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 2.7e-07 60.8 75 40.0
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 1.7e-06 58.2 305 22.0
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.7e-06 58.2 62 45.2


User provided reference genes

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