Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1208300 Malus domestica HOM05D006340 ORTHO05D007568 2.3e-250 869.0 648 100.0
MD12G1205300 Malus domestica HOM05D006340 ORTHO05D007568 8.8e-202 707.6 652 88.8
Prupe.6G312400 Prunus persica HOM05D006340 ORTHO05D007568 1.7e-181 640.2 655 81.4
QL03p014074 Quercus lobata HOM05D006340 ORTHO05D007568 6.0e-142 508.8 657 72.5
Haze_04056 Corylus avellana HOM05D006340 ORTHO05D007568 3.8e-136 489.6 659 68.7
Cfa006707 Carpinus fangiana HOM05D006340 ORTHO05D007568 3.0e-133 479.9 665 70.1
CiPaw.07G030100 Carya illinoinensis HOM05D006340 ORTHO05D007568 1.8e-130 470.7 655 71.3
Thecc.05G323700 Theobroma cacao HOM05D006340 ORTHO05D007568 1.3e-123 448.0 650 69.5
TAR362G0132 Trochodendron aralioides HOM05D006340 ORTHO05D007568 7.6e-121 438.7 658 65.5
Potri.013G008200 Populus trichocarpa HOM05D006340 ORTHO05D007568 3.2e-119 433.3 647 66.8
Duzib177G0712 Durio zibethinus HOM05D006340 ORTHO05D007568 2.3e-117 427.2 649 68.9
Atru.chr2.357 Acer truncatum HOM05D006340 ORTHO05D007568 9.7e-116 421.8 657 67.1
CSS0010691 Camellia sinensis var. sinensis HOM05D006340 ORTHO05D007568 6.3e-115 419.1 658 65.7
Potri.005G013000 Populus trichocarpa HOM05D006340 ORTHO05D007568 1.1e-114 418.3 649 66.6
Sabra13G0006900 Salix brachista HOM05D006340 ORTHO05D007568 1.0e-112 411.8 654 56.3
Ciclev10000538m.g Citrus clementina HOM05D006340 ORTHO05D007568 2.2e-112 410.6 655 67.2
GSVIVG01031248001 Vitis vinifera HOM05D006340 ORTHO05D007568 3.2e-111 406.8 654 67.7
Cpa.g.sc48.167 Carica papaya HOM05D006340 ORTHO05D007568 1.6e-110 404.4 656 68.1
RcHm_v2.0_Chr3g0457201 Rosa chinensis HOM05D006340 ORTHO05D007568 6.7e-109 399.1 679 66.3
CANSAT54G2981 Cannabis sativa HOM05D006340 ORTHO05D007568 1.1e-108 398.3 650 66.6
CiPaw.08G154900 Carya illinoinensis HOM05D006340 ORTHO05D007568 1.9e-108 397.5 650 66.6
COL.COLO4_05545 Corchorus olitorius HOM05D006340 ORTHO05D007568 7.4e-108 395.6 653 67.4
Gohir.D11G284300 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.3e-107 394.8 652 67.0
Hma1.2p1_0008F-1.1_g005560 Hydrangea macrophylla HOM05D006340 ORTHO05D007568 3.1e-106 390.2 658 66.6
Dinv30898 Davidia involucrata HOM05D006340 ORTHO05D007568 6.9e-106 389.0 654 44.6
Sed0011043 Sechium edule HOM05D006340 ORTHO05D007568 6.9e-106 389.0 648 64.5
TWI36G0703 Tripterygium wilfordii HOM05D006340 ORTHO05D007568 2.0e-105 387.5 647 64.9
Actinidia35518 Actinidia chinensis HOM05D006340 ORTHO05D007568 3.8e-104 383.3 656 63.7
Gorai.007G307200 Gossypium raimondii HOM05D006340 ORTHO05D007568 5.0e-104 382.9 652 66.4
Nn3g21728 Nelumbo nucifera HOM05D006340 ORTHO05D007568 6.5e-104 382.5 660 63.9
TAR633G1326 Trochodendron aralioides HOM05D006340 ORTHO05D007568 9.4e-103 378.6 663 62.9
Manes.09G177400 Manihot esculenta HOM05D006340 ORTHO05D007568 1.6e-102 377.9 653 57.9
CsaV3_2G007150 Cucumis sativus L. HOM05D006340 ORTHO05D007568 2.3e-101 374.0 633 65.1
Actinidia16863 Actinidia chinensis HOM05D006340 ORTHO05D007568 4.4e-100 369.8 683 51.5
ClCG02G014860 Citrullus lanatus HOM05D006340 ORTHO05D007568 8.2e-99 365.5 661 48.7
Gorai.004G236300 Gossypium raimondii HOM05D006340 ORTHO05D007568 2.2e-96 357.5 652 64.1
FAN14G3207 Fragaria x ananassa HOM05D006340 ORTHO05D007568 3.8e-96 356.7 680 65.0
FvH4_6g07501 Fragaria vesca HOM05D006340 ORTHO05D007568 6.5e-96 355.9 680 64.9
FAN02G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 6.5e-96 355.9 680 65.4
Glyma.20G096700 Glycine max HOM05D006340 ORTHO05D007568 1.1e-95 355.1 649 63.2
Sed0017369 Sechium edule HOM05D006340 ORTHO05D007568 9.4e-95 352.1 648 61.7
Glyma.10G146700 Glycine max HOM05D006340 ORTHO05D007568 2.1e-94 350.9 647 62.8
MBI18_g32031_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 2.7e-94 350.5 669 47.2
Phvul.007G201700 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 2.7e-94 350.5 650 63.1
Gohir.A08G205400 Gossypium hirsutum HOM05D006340 ORTHO05D007568 3.6e-94 350.1 645 64.0
Sabra05G0021400 Salix brachista HOM05D006340 ORTHO05D007568 6.1e-94 349.4 680 40.3
Duzib128G1170 Durio zibethinus HOM05D006340 ORTHO05D007568 2.3e-93 347.4 650 63.5
MELO3C004178.2 Cucumis melo HOM05D006340 ORTHO05D007568 1.1e-92 345.1 643 53.0
Gohir.D08G222500 Gossypium hirsutum HOM05D006340 ORTHO05D007568 4.4e-92 343.2 652 63.5
Medtr1g084120 Medicago truncatula HOM05D006340 ORTHO05D007568 7.4e-92 342.4 649 57.9
Ca_10176_v3 Cicer arietinum L. HOM05D006340 ORTHO05D007568 9.7e-92 342.0 653 61.6
Lju926C5T2 Lonicera japonica HOM05D006340 ORTHO05D007568 1.4e-90 338.2 652 56.6
PSO761G0363 Papaver somniferum HOM05D006340 ORTHO05D007568 1.8e-90 337.8 654 62.4
Lalb_Chr02g0147781 Lupinus albus HOM05D006340 ORTHO05D007568 1.6e-89 334.7 647 61.2
vmacro01568 Vaccinium macrocarpon HOM05D006340 ORTHO05D007568 9.4e-87 325.5 658 52.6
VMungo0720G2454 Vigna mungo HOM05D006340 ORTHO05D007568 8.0e-86 322.4 648 61.0
DCAR_025287 Daucus carota HOM05D006340 ORTHO05D007568 4.0e-85 320.1 655 60.3
Cc02_g35160 Coffea canephora HOM05D006340 ORTHO05D007568 2.0e-84 317.8 650 55.5
arahy.Tifrunner.gnm1.ann1.35WTTC Arachis hypogaea HOM05D006340 ORTHO05D007568 1.3e-83 315.1 665 60.2
arahy.Tifrunner.gnm1.ann1.31L8TN Arachis hypogaea HOM05D006340 ORTHO05D007568 3.7e-83 313.5 671 59.6
PSO210G6591 Papaver somniferum HOM05D006340 ORTHO05D007568 3.1e-82 310.5 553 67.5
Aqoxy2G02721 Aquilegia oxysepala HOM05D006340 ORTHO05D007568 1.2e-81 308.5 658 59.7
Lj5g0007706 Lotus japonicus HOM05D006340 ORTHO05D007568 5.9e-81 306.2 651 59.6
MBI19_g03242_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 7.7e-81 305.8 655 49.0
Eucgr.H03294 Eucalyptus grandis HOM05D006340 ORTHO05D007568 3.8e-80 303.5 646 61.9
Rhsim11G0096500 Rhododendron simsii HOM05D006340 ORTHO05D007568 6.5e-80 302.8 657 56.8
Lj5C328T5 Lonicera japonica HOM05D006340 ORTHO05D007568 4.2e-79 300.1 652 55.1
Phvul.001G224800 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 4.2e-79 300.1 650 60.6
AUR62006742 Chenopodium quinoa HOM05D006340 ORTHO05D007568 9.4e-79 298.9 648 58.3
TPR.G2586 Trifolium pratense HOM05D006340 ORTHO05D007568 1.2e-78 298.5 664 58.3
Glyma.19G228200 Glycine max HOM05D006340 ORTHO05D007568 5.2e-77 293.1 658 59.1
Hund07311 Selenicereus undatus HOM05D006340 ORTHO05D007568 5.2e-77 293.1 646 60.7
ATR0693G206 Amborella trichopoda HOM05D006340 ORTHO05D007568 5.7e-76 289.7 654 59.6
Glyma.03G231000 Glycine max HOM05D006340 ORTHO05D007568 7.5e-76 289.3 658 59.7
FAN09G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 9.8e-76 288.9 523 60.6
AUR62000387 Chenopodium quinoa HOM05D006340 ORTHO05D007568 5.4e-74 283.1 656 57.8
Os01g0300900 Oryza sativa ssp. japonica HOM05D006340 ORTHO05D007568 1.3e-72 278.5 647 53.5
VMungo1383G0056 Vigna mungo HOM05D006340 ORTHO05D007568 1.1e-71 275.4 650 59.2
Lsat_1_v5_gn_5_40480 Lactuca sativa HOM05D006340 ORTHO05D007568 1.9e-71 274.6 658 57.0
EL10Ac4g09463 Beta vulgaris HOM05D006340 ORTHO05D007568 2.1e-70 271.2 650 59.4
Dinv24462 Davidia involucrata HOM05D006340 ORTHO05D007568 2.1e-70 271.2 358 47.5
ECA246G2180 Erigeron canadensis HOM05D006340 ORTHO05D007568 2.1e-70 271.2 651 58.7
PGSC0003DMG400002763 Solanum tuberosum HOM05D006340 ORTHO05D007568 8.9e-69 265.8 662 56.9
CAN.G1076.21 Capsicum annuum HOM05D006340 ORTHO05D007568 1.3e-67 261.9 660 52.1
PGR031G1700 Punica granatum HOM05D006340 ORTHO05D007568 6.3e-67 259.6 650 58.3
Psat6g152600 Pisum sativum HOM05D006340 ORTHO05D007568 1.1e-66 258.8 499 52.3
HanXRQChr11g0324231 Helianthus annuus HOM05D006340 ORTHO05D007568 1.8e-66 258.1 650 57.7
Sopen01g044100 Solanum pennellii HOM05D006340 ORTHO05D007568 1.8e-66 258.1 659 56.6
Nitab4.5_0004525g0020 Nicotiana tabacum HOM05D006340 ORTHO05D007568 7.0e-66 256.1 659 51.6
DCAR_029344 Daucus carota HOM05D006340 ORTHO05D007568 7.8e-65 252.7 641 43.2
Ah.06g195990 Amaranthus hybridus HOM05D006340 ORTHO05D007568 2.3e-64 251.1 655 56.3
Nitab4.5_0001338g0100 Nicotiana tabacum HOM05D006340 ORTHO05D007568 3.8e-64 250.4 683 50.7
Zm00001eb130130 Zea mays HOM05D006340 ORTHO05D007568 5.0e-64 250.0 642 49.4
Zm00001eb340330 Zea mays HOM05D006340 ORTHO05D007568 6.6e-64 249.6 639 53.2
HPP92_005420 Vanilla planifolia HOM05D006340 ORTHO05D007568 2.1e-62 244.6 649 58.2
Migut.N00937 Erythranthe guttata HOM05D006340 ORTHO05D007568 1.8e-61 241.5 663 51.6
Sabra05G0020800 Salix brachista HOM05D006340 ORTHO05D007568 4.4e-60 236.9 369 66.1
Oeu053742.1 Olea europaea HOM05D006340 ORTHO05D007568 2.9e-59 234.2 661 54.0
Oeu052936.1 Olea europaea HOM05D006340 ORTHO05D007568 4.9e-59 233.4 650 54.0
Gohir.A11G274100 Gossypium hirsutum HOM05D006340 ORTHO05D007568 4.6e-57 226.9 495 56.2
THA.LOC104816894 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 7.5e-52 209.5 650 44.6
arahy.Tifrunner.gnm1.ann1.Y7QP4L Arachis hypogaea HOM05D006340 ORTHO05D007568 9.8e-52 209.1 643 51.6
Sabra05G0009200 Salix brachista HOM05D006340 ORTHO05D007568 1.5e-47 195.3 206 86.4
Sc16g0009070 Simmondsia chinensis HOM05D006340 ORTHO05D007568 2.2e-43 181.4 494 52.6
Sabra05G0020900 Salix brachista HOM05D006340 ORTHO05D007568 3.0e-40 171.0 274 40.9
Solyc01g100600.4 Solanum lycopersicum HOM05D006340 ORTHO05D007568 5.1e-40 170.2 487 46.4
SGA_v2.0_scaffold5G02892 Striga asiatica HOM05D006340 ORTHO05D007568 5.6e-39 166.8 663 39.5
arahy.Tifrunner.gnm1.ann1.9H9EE5 Arachis hypogaea HOM05D006340 ORTHO05D007568 7.3e-39 166.4 646 39.9
Peaxi162Scf01061g00014 Petunia axillaris HOM05D006340 ORTHO05D007568 5.2e-37 160.2 524 29.6
MSTRG.27937 Avicennia marina HOM05D006340 ORTHO05D007568 3.0e-32 144.4 199 75.4
MSTRG.27938 Avicennia marina HOM05D006340 ORTHO05D007568 3.9e-32 144.1 365 34.8
PSO541G0443 Papaver somniferum HOM05D006340 ORTHO05D007568 3.9e-32 144.1 250 38.8
Dinv24463 Davidia involucrata HOM05D006340 ORTHO05D007568 3.3e-31 141.0 177 85.9
FAN05G4753 Fragaria x ananassa HOM05D006340 ORTHO05D007568 1.2e-30 139.0 464 48.3
Sabra05G0022400 Salix brachista HOM05D006340 ORTHO05D007568 1.6e-30 138.7 226 40.3
SalBow3G0642 Salvia bowleyana HOM05D006340 ORTHO05D007568 6.9e-29 133.3 326 35.3
CDE08G0055 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 9.0e-29 132.9 482 47.1
CDE02G0367 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 4.2e-26 124.0 190 76.8
unitig_52.g17414 Utricularia gibba HOM05D006340 ORTHO05D007568 6.2e-22 110.2 233 48.1
THA.LOC104824492 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 2.2e-19 101.7 64 65.6
SMO115G0101 Selaginella moellendorffii HOM05D006340 ORTHO05D007568 1.6e-14 85.5 704 30.7
MBI18_g03639_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 2.9e-11 74.7 73 52.1
SMO201G0046 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.5e-07 62.4 46 54.3
AagrBONN_evm.TU.Sc2ySwM_117.2646 Anthoceros agrestis HOM05D001137 ORTHO05D007568 2.5e-07 61.6 197 23.9
ECA169G0006 Erigeron canadensis HOM05D006340 ORTHO05D007568 2.5e-07 61.6 51 60.8
SMO228G0070 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.5e-07 61.6 46 54.3
SMO199G0080 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 4.3e-07 60.8 46 54.3
SMO274G0045 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 4.3e-07 60.8 46 54.3
arahy.Tifrunner.gnm1.ann1.IB7YTW Arachis hypogaea HOM05D001137 ORTHO05D001967 9.6e-07 59.7 184 22.8
Lj5A256T13 Lonicera japonica HOM05D001137 ORTHO05D001967 1.3e-06 59.3 51 51.0
SMO125G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.3e-06 59.3 46 52.2
BcaB05g24833 Brassica carinata HOM05D003320 ORTHO05D003941 1.6e-06 58.9 49 46.9
Lsat_1_v5_gn_4_110741 Lactuca sativa HOM05D003320 ORTHO05D003941 2.8e-06 58.2 47 48.9
MBI16_g10850_MAGBIO Magnolia biondii HOM05D003320 ORTHO05D003941 2.8e-06 58.2 46 52.2
Potri.008G031200 Populus trichocarpa HOM05D001137 ORTHO05D001967 2.8e-06 58.2 51 51.0
Sabra08G0020600 Salix brachista HOM05D001137 ORTHO05D001967 2.8e-06 58.2 51 51.0
HanXRQChr16g0502481 Helianthus annuus HOM05D003320 ORTHO05D003941 3.7e-06 57.8 48 45.8
PSO017G6858 Papaver somniferum HOM05D003320 ORTHO05D003941 3.7e-06 57.8 46 47.8
PSO478G2958 Papaver somniferum HOM05D003320 ORTHO05D003941 3.7e-06 57.8 46 47.8
Lj5A258T11 Lonicera japonica HOM05D001137 ORTHO05D001967 4.8e-06 57.4 51 49.0
Mapoly0031s0090 Marchantia polymorpha HOM05D003320 ORTHO05D003941 4.8e-06 57.4 47 48.9
Nitab4.5_0002144g0040 Nicotiana tabacum HOM05D001137 ORTHO05D001967 4.8e-06 57.4 43 51.2
SMO077G0003 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 4.8e-06 57.4 46 50.0
SMO360G0028 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 4.8e-06 57.4 46 47.8
arahy.Tifrunner.gnm1.ann1.PM4BFB Arachis hypogaea HOM05D001137 ORTHO05D001967 6.2e-06 57.0 184 22.3
CARHR067300 Cardamine hirsuta HOM05D003320 ORTHO05D003941 6.2e-06 57.0 49 44.9
ECA232G1579 Erigeron canadensis HOM05D003320 ORTHO05D003941 6.2e-06 57.0 47 46.8
Potri.010G230300 Populus trichocarpa HOM05D001137 ORTHO05D001967 6.2e-06 57.0 51 49.0
Sabra10G0178700 Salix brachista HOM05D001137 ORTHO05D001967 6.2e-06 57.0 51 49.0
SMO022G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 6.2e-06 57.0 46 50.0
HPP92_006046 Vanilla planifolia HOM05D003320 ORTHO05D003941 6.2e-06 57.0 46 50.0
Thhalv10019464m.g Eutrema salsugineum HOM05D003320 ORTHO05D003941 8.2e-06 56.6 49 46.9
Potri.005G026900 Populus trichocarpa HOM05D001137 ORTHO05D001967 8.2e-06 56.6 51 49.0
Sabra05G0032200 Salix brachista HOM05D001137 ORTHO05D001967 8.2e-06 56.6 51 49.0
Sabra13G0021400 Salix brachista HOM05D001137 ORTHO05D001967 8.2e-06 56.6 51 49.0
TWI12G0524 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 8.2e-06 56.6 51 49.0


User provided reference genes

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