Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 4.2e-138 494.6 233 100.0
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 1.6e-129 466.1 220 100.0
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 2.0e-127 459.1 220 98.2
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 3.8e-123 444.9 220 95.0
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 5.9e-116 421.0 220 88.6
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 5.5e-114 414.5 220 87.7
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 5.5e-114 414.5 220 87.7
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 9.5e-114 413.7 220 87.3
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 1.6e-113 412.9 220 86.8
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 2.8e-113 412.1 220 87.3
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 8.0e-113 410.6 220 86.4
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 4.9e-110 401.4 220 84.1
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 1.2e-108 396.7 220 82.3
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 3.5e-108 395.2 220 83.2
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 1.0e-107 393.7 220 82.3
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 3.8e-107 391.7 220 80.5
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 5.0e-107 391.3 220 80.5
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 5.0e-107 391.3 220 83.2
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 5.0e-107 391.3 220 82.3
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 8.6e-107 390.6 220 81.4
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 1.1e-106 390.2 220 82.3
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 1.1e-106 390.2 221 81.0
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 1.9e-106 389.4 231 78.4
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 2.5e-106 389.0 231 77.1
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 2.5e-106 389.0 220 80.9
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 2.5e-106 389.0 220 80.9
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 2.5e-106 389.0 220 80.9
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 2.5e-106 389.0 220 81.8
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 4.3e-106 388.3 221 82.4
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 2.1e-105 386.0 220 79.5
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 2.1e-105 386.0 220 80.9
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 2.8e-105 385.6 220 79.5
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 6.1e-105 384.4 220 79.5
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 4.0e-104 381.7 220 80.5
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 4.0e-104 381.7 220 76.4
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 4.0e-104 381.7 220 79.5
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 1.2e-103 380.2 220 77.3
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 1.5e-103 379.8 220 78.2
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 1.5e-103 379.8 237 76.4
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 2.6e-103 379.0 221 78.3
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 2.6e-103 379.0 220 78.2
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 7.5e-103 377.5 220 78.2
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 7.5e-103 377.5 220 78.6
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 7.5e-103 377.5 220 76.8
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 9.8e-103 377.1 220 78.2
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 9.8e-103 377.1 220 75.9
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 2.9e-102 375.6 220 77.7
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 2.9e-102 375.6 220 75.5
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 4.9e-102 374.8 220 77.3
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 4.9e-102 374.8 220 76.4
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 4.9e-102 374.8 220 78.2
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 8.3e-102 374.0 220 76.8
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 1.1e-101 373.6 220 76.8
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 1.1e-101 373.6 220 77.3
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 3.2e-101 372.1 220 76.4
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 4.1e-101 371.7 220 77.7
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 7.0e-101 370.9 220 75.9
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.7e-100 369.0 209 82.8
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 2.7e-100 369.0 220 75.5
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 3.5e-100 368.6 220 76.8
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 4.6e-100 368.2 220 75.9
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 5.9e-100 367.9 220 75.9
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 7.8e-100 367.5 220 76.4
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 1.3e-99 366.7 231 71.4
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 1.7e-99 366.3 244 70.9
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 2.3e-99 365.9 220 73.2
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 3.9e-99 365.2 220 72.3
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 6.6e-99 364.4 220 73.2
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 8.6e-99 364.0 220 73.6
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 1.1e-98 363.6 220 72.7
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 1.9e-98 362.8 220 72.7
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 2.5e-98 362.5 220 72.3
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 2.5e-98 362.5 220 72.3
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 3.3e-98 362.1 220 72.7
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 5.6e-98 361.3 220 72.7
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 2.1e-97 359.4 220 74.5
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 3.6e-97 358.6 231 71.4
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 3.6e-97 358.6 220 72.3
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 3.6e-97 358.6 220 71.8
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 3.6e-97 358.6 220 76.8
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 6.2e-97 357.8 220 73.6
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 1.4e-96 356.7 220 71.4
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 4.0e-96 355.1 220 75.0
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 1.2e-95 353.6 220 70.9
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 1.9e-93 346.3 220 70.9
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 1.9e-93 346.3 220 71.8
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 6.0e-92 341.3 220 69.1
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 5.0e-91 338.2 220 67.7
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 5.6e-90 334.7 226 69.5
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 2.8e-89 332.4 248 65.3
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 1.4e-88 330.1 210 71.9
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 5.2e-88 328.2 220 67.7
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 5.4e-85 318.2 238 66.0
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 1.3e-83 313.5 355 48.2
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 2.3e-83 312.8 454 41.2
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 1.6e-81 306.6 231 58.4
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 4.7e-81 305.1 220 69.5
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 8.9e-80 300.8 166 81.9
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 4.4e-79 298.5 167 83.8
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 2.2e-78 296.2 231 56.3
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 2.7e-76 289.3 162 82.7
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 1.0e-75 287.3 166 76.5
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 2.0e-71 273.1 220 58.6
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 3.6e-65 252.3 141 78.0
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 4.2e-61 238.8 220 55.5
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 1.1e-58 230.7 239 46.0
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 5.3e-56 221.9 235 43.4
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 5.5e-53 211.8 223 43.5
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 3.0e-51 206.1 236 41.9
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 4.5e-47 192.2 247 40.1
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 1.2e-44 184.1 237 38.4
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.4e-40 170.6 233 37.3
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.2e-36 157.5 228 36.8
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 2.2e-33 146.7 77 81.8
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 1.7e-30 137.1 250 31.2
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 7.2e-21 105.1 181 38.1
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 1.5e-18 97.4 52 78.8
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 4.4e-18 95.9 55 76.4
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 5.2e-11 72.4 39 76.9
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 6.3e-09 65.5 221 22.6
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 7.7e-07 58.5 39 53.8


User provided reference genes

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