Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1206300 Malus domestica HOM05D003284 ORTHO05D004050 4.1e-87 324.7 167 100.0
MD07G1091900 Malus domestica HOM05D003284 ORTHO05D004050 5.5e-55 218.0 110 97.3
MD16G1141900 Malus domestica HOM05D003284 ORTHO05D004050 6.9e-50 201.1 114 89.5
MD13G1131600 Malus domestica HOM05D003284 ORTHO05D004050 2.9e-48 195.7 114 86.8
Prupe.1G214000 Prunus persica HOM05D003284 ORTHO05D004050 4.2e-47 191.8 114 83.3
Migut.K01047 Erythranthe guttata HOM05D003284 ORTHO05D004050 3.5e-46 188.7 114 82.5
Eucgr.B03563 Eucalyptus grandis HOM05D003284 ORTHO05D004050 3.5e-46 188.7 114 80.7
Duzib132G0279 Durio zibethinus HOM05D003284 ORTHO05D004050 6.0e-46 188.0 114 81.6
Gohir.A12G140000 Gossypium hirsutum HOM05D003284 ORTHO05D004050 6.0e-46 188.0 131 73.3
Duzib052G0166 Durio zibethinus HOM05D003284 ORTHO05D004050 3.0e-45 185.7 114 78.9
CANSAT01G0892 Cannabis sativa HOM05D003284 ORTHO05D004050 6.7e-45 184.5 112 80.4
Gohir.D12G144500 Gossypium hirsutum HOM05D003284 ORTHO05D004050 6.7e-45 184.5 131 71.8
Gorai.008G155900 Gossypium raimondii HOM05D003284 ORTHO05D004050 6.7e-45 184.5 131 71.8
Thecc.02G191200 Theobroma cacao HOM05D003284 ORTHO05D004050 6.7e-45 184.5 114 78.9
CiPaw.06G110000 Carya illinoinensis HOM05D003284 ORTHO05D004050 8.7e-45 184.1 114 78.1
Gohir.D02G175800 Gossypium hirsutum HOM05D003284 ORTHO05D004050 1.1e-44 183.7 114 77.2
Gorai.005G197400 Gossypium raimondii HOM05D003284 ORTHO05D004050 1.1e-44 183.7 114 77.2
Nitab4.5_0003304g0030 Nicotiana tabacum HOM05D003284 ORTHO05D004050 1.5e-44 183.3 117 76.9
PGR102G1656 Punica granatum HOM05D003284 ORTHO05D004050 1.5e-44 183.3 111 82.9
Gohir.A03G153000 Gossypium hirsutum HOM05D003284 ORTHO05D004050 1.9e-44 183.0 114 76.3
Nitab4.5_0000069g0530 Nicotiana tabacum HOM05D003284 ORTHO05D004050 1.9e-44 183.0 114 77.2
Oeu010259.1 Olea europaea HOM05D003284 ORTHO05D004050 1.9e-44 183.0 111 81.1
Atru.chr12.1336 Acer truncatum HOM05D003284 ORTHO05D004050 2.5e-44 182.6 112 80.4
Cpa.g.sc119.42 Carica papaya HOM05D003284 ORTHO05D004050 2.5e-44 182.6 114 78.1
Hma1.2p1_1494F.1_g286940 Hydrangea macrophylla HOM05D003284 ORTHO05D004050 3.3e-44 182.2 114 76.3
Peaxi162Scf00097g00139 Petunia axillaris HOM05D003284 ORTHO05D004050 4.3e-44 181.8 114 78.9
CAN.G282.74 Capsicum annuum HOM05D003284 ORTHO05D004050 5.7e-44 181.4 130 69.2
QL03p049017 Quercus lobata HOM05D003284 ORTHO05D004050 5.7e-44 181.4 114 77.2
Cfa009457 Carpinus fangiana HOM05D003284 ORTHO05D004050 9.7e-44 180.6 114 77.2
COL.COLO4_37598 Corchorus olitorius HOM05D003284 ORTHO05D004050 9.7e-44 180.6 114 77.2
Haze_12510 Corylus avellana HOM05D003284 ORTHO05D004050 9.7e-44 180.6 128 71.1
CiPaw.05G100500 Carya illinoinensis HOM05D003284 ORTHO05D004050 1.3e-43 180.3 114 77.2
Atru.chr12.1435 Acer truncatum HOM05D003284 ORTHO05D004050 1.6e-43 179.9 112 79.5
Solyc01g008110.4 Solanum lycopersicum HOM05D003284 ORTHO05D004050 1.6e-43 179.9 112 77.7
Sopen01g003660 Solanum pennellii HOM05D003284 ORTHO05D004050 1.6e-43 179.9 112 77.7
Lj9A124T28 Lonicera japonica HOM05D003284 ORTHO05D004050 2.2e-43 179.5 114 77.2
Lj9A128T46 Lonicera japonica HOM05D003284 ORTHO05D004050 2.2e-43 179.5 114 77.2
Potri.003G161700 Populus trichocarpa HOM05D003284 ORTHO05D004050 2.2e-43 179.5 112 79.5
PGSC0003DMG400016402 Solanum tuberosum HOM05D003284 ORTHO05D004050 2.2e-43 179.5 112 76.8
Sabra01G0047600 Salix brachista HOM05D003284 ORTHO05D004050 2.8e-43 179.1 112 77.7
Sabra03G0117500 Salix brachista HOM05D003284 ORTHO05D004050 2.8e-43 179.1 112 78.6
MSTRG.448 Avicennia marina HOM05D003284 ORTHO05D004050 3.7e-43 178.7 128 70.3
Potri.001G068400 Populus trichocarpa HOM05D003284 ORTHO05D004050 3.7e-43 178.7 112 77.7
SalBow6G5419 Salvia bowleyana HOM05D003284 ORTHO05D004050 4.8e-43 178.3 114 77.2
ECA246G3528 Erigeron canadensis HOM05D003284 ORTHO05D004050 6.3e-43 177.9 114 76.3
Nn4g22120 Nelumbo nucifera HOM05D003284 ORTHO05D004050 8.2e-43 177.6 114 72.8
vmacro01014 Vaccinium macrocarpon HOM05D003284 ORTHO05D004050 8.2e-43 177.6 114 76.3
SGA_v2.0_scaffold32G13262 Striga asiatica HOM05D003284 ORTHO05D004050 1.1e-42 177.2 111 77.5
Manes.16G051000 Manihot esculenta HOM05D003284 ORTHO05D004050 1.4e-42 176.8 128 71.9
MSTRG.16881 Avicennia marina HOM05D003284 ORTHO05D004050 1.8e-42 176.4 111 77.5
Lj5C767T12 Lonicera japonica HOM05D003284 ORTHO05D004050 1.8e-42 176.4 114 75.4
Manes.09G188800 Manihot esculenta HOM05D003284 ORTHO05D004050 2.4e-42 176.0 128 71.1
Manes.08G100400 Manihot esculenta HOM05D003284 ORTHO05D004050 3.1e-42 175.6 128 71.9
GSVIVG01001101001 Vitis vinifera HOM05D003284 ORTHO05D004050 3.1e-42 175.6 114 76.3
TAR622G1016 Trochodendron aralioides HOM05D003284 ORTHO05D004050 4.1e-42 175.3 130 67.7
Aqoxy1G02774 Aquilegia oxysepala HOM05D003284 ORTHO05D004050 5.3e-42 174.9 114 73.7
Oeu011727.1 Olea europaea HOM05D003284 ORTHO05D004050 6.9e-42 174.5 111 79.3
Hund17844 Selenicereus undatus HOM05D003284 ORTHO05D004050 6.9e-42 174.5 113 77.0
PSO339G2157 Papaver somniferum HOM05D003284 ORTHO05D004050 9.0e-42 174.1 114 74.6
unitig_747.g21109 Utricularia gibba HOM05D003284 ORTHO05D004050 9.0e-42 174.1 114 73.7
AUR62013783 Chenopodium quinoa HOM05D003284 ORTHO05D004050 1.2e-41 173.7 112 79.5
PSO384G4179 Papaver somniferum HOM05D003284 ORTHO05D004050 1.2e-41 173.7 112 75.9
Lsat_1_v5_gn_3_32600 Lactuca sativa HOM05D003284 ORTHO05D004050 2.6e-41 172.6 114 74.6
EL10Ac1g00722 Beta vulgaris HOM05D003284 ORTHO05D004050 3.4e-41 172.2 115 76.5
AUR62001384 Chenopodium quinoa HOM05D003284 ORTHO05D004050 3.4e-41 172.2 115 75.7
Glyma.07G110900 Glycine max HOM05D003284 ORTHO05D004050 4.5e-41 171.8 114 72.8
ATR0582G146 Amborella trichopoda HOM05D003284 ORTHO05D004050 5.9e-41 171.4 114 72.8
AUR62023373 Chenopodium quinoa HOM05D003284 ORTHO05D004050 5.9e-41 171.4 112 78.6
AUR62025596 Chenopodium quinoa HOM05D003284 ORTHO05D004050 7.6e-41 171.0 115 75.7
VMungo0331G1423 Vigna mungo HOM05D003284 ORTHO05D004050 7.6e-41 171.0 114 73.7
Ciclev10004850m.g Citrus clementina HOM05D003284 ORTHO05D004050 1.0e-40 170.6 114 71.1
MBI07_g13941_MAGBIO Magnolia biondii HOM05D003284 ORTHO05D004050 1.0e-40 170.6 132 65.2
Phvul.010G053100 Phaseolus vulgaris HOM05D003284 ORTHO05D004050 1.0e-40 170.6 114 73.7
Ah.11g043320 Amaranthus hybridus HOM05D003284 ORTHO05D004050 1.3e-40 170.2 112 76.8
Ca_23129_v3 Cicer arietinum L. HOM05D003284 ORTHO05D004050 1.3e-40 170.2 114 71.9
ClCG07G011920 Citrullus lanatus HOM05D003284 ORTHO05D004050 1.3e-40 170.2 111 75.7
Glyma.03G115300 Glycine max HOM05D003284 ORTHO05D004050 1.3e-40 170.2 114 71.9
CSS0003855 Camellia sinensis var. sinensis HOM05D003284 ORTHO05D004050 2.2e-40 169.5 132 68.2
Medtr8g006450 Medicago truncatula HOM05D003284 ORTHO05D004050 2.2e-40 169.5 111 73.0
MELO3C017815.2 Cucumis melo HOM05D003284 ORTHO05D004050 2.9e-40 169.1 112 75.0
CsaV3_4G002240 Cucumis sativus L. HOM05D003284 ORTHO05D004050 5.0e-40 168.3 112 75.0
SEGI_35639 Sequoiadendron giganteum HOM05D003284 ORTHO05D004050 5.0e-40 168.3 117 65.8
vmacro01015 Vaccinium macrocarpon HOM05D003284 ORTHO05D004050 5.0e-40 168.3 114 70.2
TWI18G0756 Tripterygium wilfordii HOM05D003284 ORTHO05D004050 1.4e-39 166.8 114 71.9
TWI36G0431 Tripterygium wilfordii HOM05D003284 ORTHO05D004050 1.4e-39 166.8 114 70.2
RcHm_v2.0_Chr4g0428771 Rosa chinensis HOM05D003284 ORTHO05D004050 1.9e-39 166.4 115 73.0
Sed0004111 Sechium edule HOM05D003284 ORTHO05D004050 1.9e-39 166.4 114 71.1
TPR.G24957 Trifolium pratense HOM05D003284 ORTHO05D004050 1.9e-39 166.4 111 72.1
Migut.B00119 Erythranthe guttata HOM05D003284 ORTHO05D004050 2.5e-39 166.0 106 74.5
Cc11_g14940 Coffea canephora HOM05D003284 ORTHO05D004050 3.2e-39 165.6 112 71.4
Lj3g0023959 Lotus japonicus HOM05D003284 ORTHO05D004050 3.2e-39 165.6 114 71.1
SHI04109 Sapria himalayana HOM05D003284 ORTHO05D004050 3.2e-39 165.6 129 63.6
Rhsim12G0016800 Rhododendron simsii HOM05D003284 ORTHO05D004050 4.2e-39 165.2 114 72.8
CDE02G0640 Ceratophyllum demersum HOM05D003284 ORTHO05D004050 5.5e-39 164.9 128 64.1
FvH4_4g22540 Fragaria vesca HOM05D003284 ORTHO05D004050 5.5e-39 164.9 115 72.2
FAN12G2070 Fragaria x ananassa HOM05D003284 ORTHO05D004050 5.5e-39 164.9 115 72.2
FAN17G2758 Fragaria x ananassa HOM05D003284 ORTHO05D004050 5.5e-39 164.9 115 72.2
Lalb_Chr21g0307761 Lupinus albus HOM05D003284 ORTHO05D004050 5.5e-39 164.9 112 70.5
FAN07G1836 Fragaria x ananassa HOM05D003284 ORTHO05D004050 9.3e-39 164.1 105 75.2
Sc11g0000060 Simmondsia chinensis HOM05D003284 ORTHO05D004050 9.3e-39 164.1 138 63.8
GSVIVG01027208001 Vitis vinifera HOM05D003284 ORTHO05D004050 9.3e-39 164.1 114 69.3
Lalb_Chr13g0290431 Lupinus albus HOM05D003284 ORTHO05D004050 1.6e-38 163.3 114 68.4
arahy.Tifrunner.gnm1.ann1.TJSZ1F Arachis hypogaea HOM05D003284 ORTHO05D004050 2.1e-38 162.9 114 71.1
arahy.Tifrunner.gnm1.ann1.VHEE5Y Arachis hypogaea HOM05D003284 ORTHO05D004050 2.1e-38 162.9 114 71.1
TAR629G0534 Trochodendron aralioides HOM05D003284 ORTHO05D004050 2.7e-38 162.5 133 62.4
THA.LOC104807262 Tarenaya hassleriana HOM05D003284 ORTHO05D004050 7.9e-38 161.0 115 68.7
Aa31LG1G3080 Aethionema arabicum HOM05D003284 ORTHO05D004050 1.8e-37 159.8 116 70.7
Carub.0001s1132 Capsella rubella HOM05D003284 ORTHO05D004050 3.0e-37 159.1 116 69.8
BcaC05g25034 Brassica carinata HOM05D003284 ORTHO05D004050 6.7e-37 157.9 133 64.7
BcaNung04809 Brassica carinata HOM05D003284 ORTHO05D004050 6.7e-37 157.9 158 56.3
C05p09790 Brassica napus HOM05D003284 ORTHO05D004050 6.7e-37 157.9 133 64.7
AL1G22820 Arabidopsis lyrata HOM05D003284 ORTHO05D004050 8.8e-37 157.5 116 69.0
AT1G11680 Arabidopsis thaliana HOM05D003284 ORTHO05D004050 1.1e-36 157.1 116 69.8
A06p08230 Brassica napus HOM05D003284 ORTHO05D004050 1.1e-36 157.1 133 63.9
BolC5t29720H Brassica oleracea HOM05D003284 ORTHO05D004050 1.1e-36 157.1 163 57.1
BraA06t24023Z Brassica rapa HOM05D003284 ORTHO05D004050 1.1e-36 157.1 133 63.9
Sed0025427 Sechium edule HOM05D003284 ORTHO05D004050 1.1e-36 157.1 113 71.7
HPP92_023029 Vanilla planifolia HOM05D003284 ORTHO05D004050 2.5e-36 156.0 114 63.2
Thhalv10007480m.g Eutrema salsugineum HOM05D003284 ORTHO05D004050 5.7e-36 154.8 116 68.1
BcaC05g25036 Brassica carinata HOM05D003284 ORTHO05D004050 9.7e-36 154.1 137 59.1
DCAR_022749 Daucus carota HOM05D003284 ORTHO05D004050 9.7e-36 154.1 132 64.4
Sp1g10290 Schrenkiella parvula HOM05D003284 ORTHO05D004050 9.7e-36 154.1 138 60.1
CARHR011990 Cardamine hirsuta HOM05D003284 ORTHO05D004050 1.3e-35 153.7 117 65.8
BraA08t35249Z Brassica rapa HOM05D003284 ORTHO05D004050 6.3e-35 151.4 116 67.2
C01p51050 Brassica napus HOM05D003284 ORTHO05D004050 3.1e-34 149.1 116 63.8
C01p51430 Brassica napus HOM05D003284 ORTHO05D004050 3.1e-34 149.1 116 63.8
A08p33320 Brassica napus HOM05D003284 ORTHO05D004050 4.1e-34 148.7 116 66.4
BcaC07g38681 Brassica carinata HOM05D003284 ORTHO05D004050 5.3e-34 148.3 99 72.7
A01p40010 Brassica napus HOM05D003284 ORTHO05D004050 5.3e-34 148.3 116 63.8
BolC1t05067H Brassica oleracea HOM05D003284 ORTHO05D004050 5.3e-34 148.3 116 63.8
BolC1t05086H Brassica oleracea HOM05D003284 ORTHO05D004050 5.3e-34 148.3 116 63.8
BolC8t49116H Brassica oleracea HOM05D003284 ORTHO05D004050 5.3e-34 148.3 99 72.7
BraA01t04042Z Brassica rapa HOM05D003284 ORTHO05D004050 5.3e-34 148.3 116 63.8
Rhsim12G0016600 Rhododendron simsii HOM05D003284 ORTHO05D004050 6.9e-34 147.9 131 61.1
BcaB03g13240 Brassica carinata HOM05D003284 ORTHO05D004050 9.1e-34 147.5 97 73.2
CARHR100170 Cardamine hirsuta HOM05D003284 ORTHO05D004050 9.1e-34 147.5 120 61.7
AUR62044644 Chenopodium quinoa HOM05D003284 ORTHO05D004050 2.0e-33 146.4 88 81.8
Os11g0525200 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 2.6e-33 146.0 127 59.1
arahy.Tifrunner.gnm1.ann1.4A4I8X Arachis hypogaea HOM05D003284 ORTHO05D004050 3.4e-33 145.6 114 64.9
C01p51460 Brassica napus HOM05D003284 ORTHO05D004050 3.4e-33 145.6 138 56.5
BcaC09g48318 Brassica carinata HOM05D003284 ORTHO05D004050 4.5e-33 145.2 121 63.6
BcaC09g48332 Brassica carinata HOM05D003284 ORTHO05D004050 7.7e-33 144.4 116 62.1
C01p51290 Brassica napus HOM05D003284 ORTHO05D004050 7.7e-33 144.4 116 62.1
SMO196G0249 Selaginella moellendorffii HOM05D003284 ORTHO05D004050 7.7e-33 144.4 102 65.7
Aqoxy1G03842 Aquilegia oxysepala HOM05D003284 ORTHO05D004050 2.2e-32 142.9 114 62.3
C08p14820 Brassica napus HOM05D003284 ORTHO05D004050 2.9e-32 142.5 124 62.1
Zm00001eb163800 Zea mays HOM05D003284 ORTHO05D004050 2.9e-32 142.5 127 55.1
Pp3c8_15480 Physcomitrium patens HOM05D003284 ORTHO05D004050 1.2e-30 137.1 117 58.1
Zm00001eb405760 Zea mays HOM05D003284 ORTHO05D004050 1.6e-30 136.7 99 62.6
AagrBONN_evm.TU.Sc2ySwM_117.1116 Anthoceros agrestis HOM05D003284 ORTHO05D004050 2.7e-30 136.0 115 59.1
EL10Ac3g06206 Beta vulgaris HOM05D003284 ORTHO05D004050 7.4e-28 127.9 137 50.4
Mapoly0003s0192 Marchantia polymorpha HOM05D003284 ORTHO05D004050 9.7e-28 127.5 114 57.0
Zm00001eb170560 Zea mays HOM05D003284 ORTHO05D004050 1.7e-27 126.7 141 46.1
HanXRQChr17g0540371 Helianthus annuus HOM05D003284 ORTHO05D004050 1.1e-26 124.0 73 83.6
Actinidia22112 Actinidia chinensis HOM05D003284 ORTHO05D004050 1.8e-26 123.2 73 83.6
Dinv12599 Davidia involucrata HOM05D003284 ORTHO05D004050 2.4e-26 122.9 73 80.8
EL10Ac3g06202 Beta vulgaris HOM05D003284 ORTHO05D004050 3.1e-26 122.5 137 48.2
MCO02G285 Micromonas commoda HOM05D003284 ORTHO05D004050 6.9e-26 121.3 95 58.9
AUR62035811 Chenopodium quinoa HOM05D003284 ORTHO05D004050 1.5e-25 120.2 129 50.4
AUR62035813 Chenopodium quinoa HOM05D003284 ORTHO05D004050 1.5e-25 120.2 129 50.4
Zm00001eb170580 Zea mays HOM05D003284 ORTHO05D004050 1.5e-25 120.2 146 46.6
CDE05G1673 Ceratophyllum demersum HOM05D003284 ORTHO05D004050 1.0e-24 117.5 79 67.1
AUR62027540 Chenopodium quinoa HOM05D003284 ORTHO05D004050 1.0e-24 117.5 122 53.3
EL10Ac3g06208 Beta vulgaris HOM05D003284 ORTHO05D004050 1.7e-24 116.7 134 47.8
unitig_22.g6374 Utricularia gibba HOM05D003284 ORTHO05D004050 6.5e-24 114.8 73 75.3
AUR62035816 Chenopodium quinoa HOM05D003284 ORTHO05D004050 1.4e-23 113.6 134 48.5
CBR_g12707 Chara braunii HOM05D003284 ORTHO05D004050 5.5e-23 111.7 113 50.4
PRCOL_00005544 Prasinoderma coloniale HOM05D003284 ORTHO05D004050 1.0e-21 107.5 113 46.9
Cre02.g092350 Chlamydomonas reinhardtii HOM05D003284 ORTHO05D004050 2.0e-20 103.2 136 45.6
Os05g0211100 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 6.3e-19 98.2 96 47.9
SMO196G0269 Selaginella moellendorffii HOM05D003284 ORTHO05D004050 1.8e-18 96.7 66 68.2
Psat4g225960 Pisum sativum HOM05D003284 ORTHO05D004050 1.3e-16 90.5 68 63.2
EL10Ac3g06204 Beta vulgaris HOM05D003284 ORTHO05D088368 3.8e-16 89.0 76 56.6
BcaC09g48322 Brassica carinata HOM05D003284 ORTHO05D004050 8.5e-16 87.8 52 78.8
Zm00001eb159000 Zea mays HOM05D003284 ORTHO05D050158 2.5e-15 86.3 119 42.0
Sc08g0001820 Simmondsia chinensis HOM05D001551 ORTHO05D003058 2.1e-14 83.2 55 70.9
ATR0214G001 Amborella trichopoda HOM05D003284 ORTHO05D038339 8.0e-14 81.3 112 43.8
Os05g0416400 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 3.0e-13 79.3 127 35.4
Zm00001eb114290 Zea mays HOM05D003284 ORTHO05D004050 1.2e-09 67.4 77 46.8
ATR0582G245 Amborella trichopoda HOM05D003284 ORTHO05D038339 2.0e-09 66.6 105 40.0
Os07g0567100 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 3.5e-09 65.9 98 39.8
Os05g0415800 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 2.9e-08 62.8 94 40.4
Os05g0415900 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D293225 3.8e-08 62.4 81 43.2
Os02g0323600 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D050158 3.2e-07 59.3 94 36.2
SEGI_16891 Sequoiadendron giganteum HOM05D003284 ORTHO05D384666 3.2e-07 59.3 43 58.1


User provided reference genes

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