Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 5.6e-106 387.5 181 100.0
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 2.9e-86 322.0 162 95.1
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 4.4e-74 281.6 150 86.0
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 1.7e-73 279.6 150 86.7
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 2.4e-72 275.8 149 83.2
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 9.1e-72 273.9 149 83.9
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 5.5e-69 264.6 150 80.0
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 3.6e-68 261.9 159 76.7
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 4.7e-68 261.5 150 78.7
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 6.1e-68 261.2 174 69.5
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 6.1e-68 261.2 174 69.5
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 1.0e-67 260.4 151 78.1
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 1.0e-67 260.4 150 80.7
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 3.0e-67 258.8 150 78.0
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 2.6e-66 255.8 150 77.3
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 3.3e-66 255.4 150 78.0
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 7.4e-66 254.2 150 78.0
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 4.8e-65 251.5 150 75.3
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 6.3e-65 251.1 150 75.3
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.1e-64 250.4 150 75.3
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.4e-64 250.0 150 75.3
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.8e-64 249.6 150 74.7
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 3.1e-64 248.8 169 68.6
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 2.6e-63 245.7 150 74.7
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 2.6e-63 245.7 150 74.7
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 2.6e-63 245.7 150 74.7
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 4.5e-63 245.0 159 72.3
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 4.5e-63 245.0 157 71.3
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 1.0e-62 243.8 150 71.3
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 1.0e-62 243.8 150 71.3
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.7e-62 243.0 158 71.5
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 2.2e-62 242.7 149 76.5
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 3.8e-62 241.9 158 69.0
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 6.5e-62 241.1 159 71.7
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 6.5e-62 241.1 150 72.7
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 8.5e-62 240.7 150 74.0
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 8.5e-62 240.7 151 73.5
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 8.5e-62 240.7 161 69.6
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.5e-61 240.0 151 72.8
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 1.9e-61 239.6 161 68.3
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.9e-61 239.6 161 68.3
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 3.2e-61 238.8 151 72.2
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 4.2e-61 238.4 149 73.8
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 4.2e-61 238.4 150 72.7
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 1.2e-60 236.9 151 71.5
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 2.1e-60 236.1 150 70.0
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 2.1e-60 236.1 150 69.3
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 2.7e-60 235.7 149 72.5
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 4.7e-60 235.0 152 71.7
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 1.0e-59 233.8 152 73.0
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 1.0e-59 233.8 150 71.3
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 1.4e-59 233.4 150 71.3
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 4.0e-59 231.9 159 67.3
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 4.0e-59 231.9 150 70.7
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 6.7e-59 231.1 150 72.0
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 8.8e-59 230.7 151 71.5
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.2e-58 230.3 160 66.2
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.2e-58 230.3 150 70.0
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 1.5e-58 229.9 150 70.7
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 2.6e-58 229.2 149 72.5
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 4.4e-58 228.4 152 71.7
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 4.8e-57 224.9 150 70.0
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 6.3e-57 224.6 150 69.3
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 1.1e-56 223.8 150 68.7
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 4.1e-56 221.9 146 71.9
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 9.1e-56 220.7 161 64.6
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 1.6e-55 219.9 153 67.3
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 3.5e-55 218.8 151 67.5
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 7.7e-55 217.6 150 68.0
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 1.3e-54 216.9 150 66.7
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 2.2e-54 216.1 150 66.7
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 6.5e-54 214.5 150 66.0
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 8.5e-54 214.2 153 64.7
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 8.5e-54 214.2 150 64.7
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 1.9e-53 213.0 164 62.8
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 2.5e-53 212.6 162 63.6
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 4.2e-53 211.8 150 66.0
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 4.7e-52 208.4 161 63.4
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 8.0e-52 207.6 149 65.1
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.0e-51 207.2 192 53.6
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.0e-51 207.2 192 53.6
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.4e-51 206.8 150 63.3
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 1.8e-51 206.5 223 49.8
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 8.8e-51 204.1 149 63.1
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.2e-50 203.8 150 62.7
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 1.9e-45 186.4 138 60.1
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.5e-45 186.0 116 72.4
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 3.6e-44 182.2 112 73.2
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 8.9e-43 177.6 129 64.3
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 2.0e-42 176.4 99 80.8
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 2.6e-42 176.0 166 56.0
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 4.4e-42 175.3 154 57.8
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 1.3e-41 173.7 162 54.3
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 2.8e-41 172.6 101 76.2
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 3.7e-41 172.2 101 77.2
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 1.1e-40 170.6 110 70.9
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 1.1e-40 170.6 102 72.5
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.1e-40 170.6 138 59.4
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.4e-40 170.2 212 45.8
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.4e-40 170.2 152 52.6
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 1.8e-40 169.9 114 69.3
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 3.1e-40 169.1 155 52.9
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 7.0e-40 167.9 149 57.0
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 2.7e-39 166.0 101 70.3
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.7e-39 166.0 111 71.2
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 3.9e-38 162.2 149 57.0
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 1.5e-37 160.2 105 69.5
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 9.5e-37 157.5 160 48.1
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.0e-35 154.1 176 44.9
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 1.8e-35 153.3 103 69.9
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 8.9e-35 151.0 91 71.4
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 1.5e-34 150.2 91 75.8
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 2.4e-32 142.9 180 43.9
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 5.4e-32 141.7 120 59.2
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 6.6e-30 134.8 89 67.4
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 9.5e-21 104.4 54 83.3
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 5.2e-19 98.6 150 40.7
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.2e-18 97.4 59 78.0
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 3.2e-16 89.4 53 77.4
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 7.1e-16 88.2 48 85.4
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 2.7e-15 86.3 55 70.9
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 6.6e-14 81.6 48 75.0
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 4.3e-13 79.0 64 53.1
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 1.8e-11 73.6 37 83.8
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 6.4e-09 65.1 57 52.6


User provided reference genes

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