Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1185500 Malus domestica HOM05D001692 ORTHO05D003541 9.5e-164 580.1 291 100.0
Prupe.4G152300 Prunus persica HOM05D001692 ORTHO05D003541 1.6e-102 376.7 299 68.2
MD11G1275800 Malus domestica HOM05D001692 ORTHO05D003541 5.1e-101 371.7 260 74.6
RcHm_v2.0_Chr5g0028351 Rosa chinensis HOM05D001692 ORTHO05D003541 4.5e-89 332.0 295 62.7
FvH4_3g17020 Fragaria vesca HOM05D001692 ORTHO05D003541 5.2e-85 318.5 295 61.4
FAN16G0240 Fragaria x ananassa HOM05D001692 ORTHO05D003541 5.2e-85 318.5 295 61.4
FAN21G3942 Fragaria x ananassa HOM05D001692 ORTHO05D003541 6.7e-85 318.2 295 61.0
FAN11G2256 Fragaria x ananassa HOM05D001692 ORTHO05D003541 1.5e-84 317.0 295 61.4
Haze_08475 Corylus avellana HOM05D001692 ORTHO05D003541 9.1e-82 307.8 297 57.2
Cfa019475 Carpinus fangiana HOM05D001692 ORTHO05D003541 1.5e-79 300.4 297 56.2
MD03G1254200 Malus domestica HOM05D001692 ORTHO05D003541 1.6e-78 297.0 147 98.6
CiPaw.11G067800 Carya illinoinensis HOM05D001692 ORTHO05D003541 6.8e-77 291.6 297 56.2
Lj3g0005272 Lotus japonicus HOM05D001692 ORTHO05D003541 6.3e-75 285.0 299 53.5
FAN25G2855 Fragaria x ananassa HOM05D001692 ORTHO05D003541 8.6e-72 274.6 251 60.2
QL04p069054 Quercus lobata HOM05D001692 ORTHO05D003541 2.5e-71 273.1 298 53.4
Ca_03403_v3 Cicer arietinum L. HOM05D001692 ORTHO05D003541 1.6e-70 270.4 291 52.6
Lalb_Chr20g0109021 Lupinus albus HOM05D001692 ORTHO05D003541 1.6e-70 270.4 306 53.3
TPR.G29673 Trifolium pratense HOM05D001692 ORTHO05D003541 3.6e-70 269.2 296 51.0
Medtr2g072180 Medicago truncatula HOM05D001692 ORTHO05D003541 1.8e-69 266.9 298 52.7
Prupe.4G152200 Prunus persica HOM05D001692 ORTHO05D003541 1.2e-68 264.2 259 57.9
THA.LOC104822597 Tarenaya hassleriana HOM05D001692 ORTHO05D003541 2.0e-68 263.5 300 51.7
MD11G1276000 Malus domestica HOM05D001692 ORTHO05D003541 3.7e-67 259.2 289 50.2
Psat1g009080 Pisum sativum HOM05D001692 ORTHO05D003541 8.3e-67 258.1 299 48.5
Manes.15G100600 Manihot esculenta HOM05D001692 ORTHO05D003541 1.1e-66 257.7 295 53.2
Ciclev10018996m.g Citrus clementina HOM05D001692 ORTHO05D003541 5.4e-66 255.4 298 52.7
Sp3g12860 Schrenkiella parvula HOM05D001692 ORTHO05D003541 1.6e-65 253.8 298 48.7
FAN16G2563 Fragaria x ananassa HOM05D001692 ORTHO05D003541 3.5e-65 252.7 280 50.4
FvH4_3g16980 Fragaria vesca HOM05D001692 ORTHO05D003541 4.5e-65 252.3 280 50.4
Glyma.13G261200 Glycine max HOM05D001692 ORTHO05D003541 1.0e-64 251.1 300 50.7
Gohir.A01G043500 Gossypium hirsutum HOM05D001692 ORTHO05D003541 1.3e-64 250.8 296 52.4
MD03G1254900 Malus domestica HOM05D001692 ORTHO05D003541 1.3e-64 250.8 289 49.1
FAN11G2574 Fragaria x ananassa HOM05D001692 ORTHO05D003541 1.7e-64 250.4 280 50.0
Duzib268G0118 Durio zibethinus HOM05D001692 ORTHO05D003541 6.6e-64 248.4 299 50.5
TWI38G0873 Tripterygium wilfordii HOM05D001692 ORTHO05D003541 8.6e-64 248.1 292 50.7
Dinv26680 Davidia involucrata HOM05D001692 ORTHO05D003541 5.6e-63 245.4 302 53.6
Gorai.002G042800 Gossypium raimondii HOM05D001692 ORTHO05D003541 1.2e-62 244.2 299 49.5
RcHm_v2.0_Chr5g0028301 Rosa chinensis HOM05D001692 ORTHO05D003541 1.2e-62 244.2 279 48.7
Thecc.07G141900 Theobroma cacao HOM05D001692 ORTHO05D003541 2.1e-62 243.4 298 50.7
CANSAT56G4466 Cannabis sativa HOM05D001692 ORTHO05D003541 2.8e-62 243.0 296 49.7
VMungo1080G1562 Vigna mungo HOM05D001692 ORTHO05D003541 3.6e-62 242.7 286 48.3
Carub.0003s1429 Capsella rubella HOM05D001692 ORTHO05D003541 4.7e-62 242.3 295 48.8
Lj1C819T6 Lonicera japonica HOM05D001692 ORTHO05D003541 4.7e-62 242.3 295 51.5
Duzib213G0773 Durio zibethinus HOM05D001692 ORTHO05D003541 6.1e-62 241.9 291 49.1
Thhalv10020164m.g Eutrema salsugineum HOM05D001692 ORTHO05D003541 8.0e-62 241.5 293 49.5
AL3G26920 Arabidopsis lyrata HOM05D001692 ORTHO05D003541 1.4e-61 240.7 295 48.8
BcaB02g10911 Brassica carinata HOM05D001692 ORTHO05D003541 1.4e-61 240.7 295 48.8
Cc05_g10450 Coffea canephora HOM05D001692 ORTHO05D003541 1.4e-61 240.7 297 45.8
Eucgr.F03215 Eucalyptus grandis HOM05D001692 ORTHO05D003541 1.8e-61 240.4 298 48.0
Thhalv10011273m.g Eutrema salsugineum HOM05D001692 ORTHO05D003541 2.3e-61 240.0 295 48.8
COL.COLO4_17437 Corchorus olitorius HOM05D001692 ORTHO05D003541 4.0e-61 239.2 298 48.3
CARHR089550 Cardamine hirsuta HOM05D001692 ORTHO05D003541 2.0e-60 236.9 299 48.2
CiPaw.12G046400 Carya illinoinensis HOM05D001692 ORTHO05D003541 2.6e-60 236.5 292 48.3
Gohir.D01G034600 Gossypium hirsutum HOM05D001692 ORTHO05D003541 3.4e-60 236.1 295 49.5
AT1G53590 Arabidopsis thaliana HOM05D001692 ORTHO05D003541 4.4e-60 235.7 297 48.5
Hma1.2p1_0280F.1_g112850 Hydrangea macrophylla HOM05D001692 ORTHO05D003541 7.5e-60 235.0 296 50.7
Carub.0001s4280 Capsella rubella HOM05D001692 ORTHO05D003541 9.8e-60 234.6 295 47.5
CARHR043850 Cardamine hirsuta HOM05D001692 ORTHO05D003541 9.8e-60 234.6 295 47.1
Sp1g40090 Schrenkiella parvula HOM05D001692 ORTHO05D003541 1.7e-59 233.8 295 46.4
AT3G14590 Arabidopsis thaliana HOM05D001692 ORTHO05D003541 2.2e-59 233.4 295 47.8
BraA01t03961Z Brassica rapa HOM05D001692 ORTHO05D003541 2.2e-59 233.4 290 47.6
Phvul.005G062600 Phaseolus vulgaris HOM05D001692 ORTHO05D003541 2.9e-59 233.0 303 47.9
TWI38G2140 Tripterygium wilfordii HOM05D001692 ORTHO05D003541 2.9e-59 233.0 292 49.3
Aa31LG8G1800 Aethionema arabicum HOM05D001692 ORTHO05D003541 8.3e-59 231.5 300 47.3
A01p39160 Brassica napus HOM05D001692 ORTHO05D003541 1.4e-58 230.7 292 47.3
C01p49860 Brassica napus HOM05D001692 ORTHO05D003541 3.2e-58 229.6 292 46.9
BolC1t04943H Brassica oleracea HOM05D001692 ORTHO05D003541 3.2e-58 229.6 292 46.9
Nn3g20725 Nelumbo nucifera HOM05D001692 ORTHO05D003541 4.1e-58 229.2 296 45.9
C06p15020 Brassica napus HOM05D001692 ORTHO05D003541 5.4e-58 228.8 297 47.5
BolC6t36679H Brassica oleracea HOM05D001692 ORTHO05D003541 5.4e-58 228.8 297 47.5
BraA05t20712Z Brassica rapa HOM05D001692 ORTHO05D003541 7.0e-58 228.4 297 47.1
Glyma.15G245600 Glycine max HOM05D001692 ORTHO05D003541 2.0e-57 226.9 299 48.5
A05p18190 Brassica napus HOM05D001692 ORTHO05D003541 3.5e-57 226.1 296 47.0
CSS0029038 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 4.6e-57 225.7 303 46.2
Potri.001G379800 Populus trichocarpa HOM05D001692 ORTHO05D003541 4.6e-57 225.7 290 49.3
PGR031G3933 Punica granatum HOM05D001692 ORTHO05D003541 4.6e-57 225.7 292 46.2
BcaC08g44126 Brassica carinata HOM05D001692 ORTHO05D003541 7.8e-57 224.9 297 46.5
CSS0027870 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 1.3e-56 224.2 303 45.9
Lalb_Chr01g0016131 Lupinus albus HOM05D001692 ORTHO05D003541 3.0e-56 223.0 347 42.4
arahy.Tifrunner.gnm1.ann1.SDH4Q1 Arachis hypogaea HOM05D001692 ORTHO05D003541 3.9e-56 222.6 325 43.1
A05p34830 Brassica napus HOM05D001692 ORTHO05D003541 3.9e-56 222.6 292 43.8
MELO3C025594.2 Cucumis melo HOM05D001692 ORTHO05D003541 3.9e-56 222.6 300 47.0
arahy.Tifrunner.gnm1.ann1.RU54A6 Arachis hypogaea HOM05D001692 ORTHO05D003541 8.6e-56 221.5 325 43.1
BraA05t22295Z Brassica rapa HOM05D001692 ORTHO05D003541 1.5e-55 220.7 291 43.3
CsaV3_4G032610 Cucumis sativus L. HOM05D001692 ORTHO05D003541 5.6e-55 218.8 300 47.0
BolC5t33947H Brassica oleracea HOM05D001692 ORTHO05D003541 1.2e-54 217.6 289 43.3
Dinv13327 Davidia involucrata HOM05D001692 ORTHO05D003541 6.2e-54 215.3 299 50.5
Sed0022537 Sechium edule HOM05D001692 ORTHO05D003541 6.2e-54 215.3 298 43.6
C05p52680 Brassica napus HOM05D001692 ORTHO05D003541 8.0e-54 214.9 289 43.9
Nn4g26545 Nelumbo nucifera HOM05D001692 ORTHO05D003541 1.1e-53 214.5 299 43.1
RhsimUnG0205700 Rhododendron simsii HOM05D001692 ORTHO05D003541 1.4e-53 214.2 302 46.4
MSTRG.15019 Avicennia marina HOM05D001692 ORTHO05D003541 5.2e-53 212.2 301 43.9
Aa31LG10G1660 Aethionema arabicum HOM05D001692 ORTHO05D003541 8.9e-53 211.5 280 45.4
BcaC05g29056 Brassica carinata HOM05D001692 ORTHO05D003541 8.9e-53 211.5 287 43.6
TAR627G0639 Trochodendron aralioides HOM05D001692 ORTHO05D003541 4.4e-52 209.1 238 50.0
Aqoxy1G01723 Aquilegia oxysepala HOM05D001692 ORTHO05D003541 5.8e-52 208.8 296 47.0
DCAR_017572 Daucus carota HOM05D001692 ORTHO05D003541 3.7e-51 206.1 302 45.4
DCAR_025852 Daucus carota HOM05D001692 ORTHO05D003541 3.7e-51 206.1 302 45.4
vmacro12002 Vaccinium macrocarpon HOM05D001692 ORTHO05D003541 1.2e-49 201.1 303 45.5
BcaB06g25372 Brassica carinata HOM05D001692 ORTHO05D003541 6.0e-49 198.7 293 42.3
Manes.03G091048 Manihot esculenta HOM05D001692 ORTHO05D003541 2.3e-48 196.8 300 43.0
Sed0010110 Sechium edule HOM05D001692 ORTHO05D003541 3.0e-48 196.4 299 40.5
Oeu026470.2 Olea europaea HOM05D001692 ORTHO05D003541 6.6e-48 195.3 304 41.8
SGA_v2.0_scaffold73G24332 Striga asiatica HOM05D001692 ORTHO05D003541 1.5e-47 194.1 295 43.1
CSS0044469 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 3.3e-47 193.0 304 44.4
Actinidia03647 Actinidia chinensis HOM05D001692 ORTHO05D003541 9.5e-47 191.4 295 43.4
Sc03g0010920 Simmondsia chinensis HOM05D001692 ORTHO05D003541 2.8e-46 189.9 301 41.9
Nitab4.5_0006409g0010 Nicotiana tabacum HOM05D001692 ORTHO05D003541 8.1e-46 188.3 300 41.7
GSVIVG01000623001 Vitis vinifera HOM05D001692 ORTHO05D003541 1.1e-45 188.0 299 42.8
vmacro09425 Vaccinium macrocarpon HOM05D001692 ORTHO05D003541 1.4e-45 187.6 302 42.4
Eucgr.F01402 Eucalyptus grandis HOM05D001692 ORTHO05D003541 2.3e-45 186.8 294 39.8
Actinidia12620 Actinidia chinensis HOM05D001692 ORTHO05D003541 8.9e-45 184.9 295 43.1
BcaC09g48428 Brassica carinata HOM05D001692 ORTHO05D003541 1.2e-44 184.5 219 47.5
Nitab4.5_0005492g0010 Nicotiana tabacum HOM05D001692 ORTHO05D003541 1.5e-44 184.1 301 41.9
Nitab4.5_0007142g0010 Nicotiana tabacum HOM05D001692 ORTHO05D003541 1.5e-44 184.1 294 40.8
CAN.G375.76 Capsicum annuum HOM05D001692 ORTHO05D003541 2.0e-44 183.7 305 42.6
Migut.M00625 Erythranthe guttata HOM05D001692 ORTHO05D003541 3.4e-44 183.0 311 40.8
Hund02324 Selenicereus undatus HOM05D001692 ORTHO05D003541 3.4e-44 183.0 306 40.5
Nitab4.5_0000639g0080 Nicotiana tabacum HOM05D001692 ORTHO05D003541 4.4e-44 182.6 298 40.3
Peaxi162Scf00111g01142 Petunia axillaris HOM05D001692 ORTHO05D003541 1.3e-43 181.0 303 41.3
Rhsim06G0186500 Rhododendron simsii HOM05D001692 ORTHO05D003541 2.2e-43 180.3 264 45.8
Peaxi162Scf00000g00522 Petunia axillaris HOM05D001692 ORTHO05D003541 4.9e-43 179.1 293 41.0
Sopen07g030220 Solanum pennellii HOM05D001692 ORTHO05D003541 1.1e-42 177.9 302 41.7
BcaC05g29058 Brassica carinata HOM05D001692 ORTHO05D003541 1.9e-42 177.2 256 42.2
AUR62037985 Chenopodium quinoa HOM05D001692 ORTHO05D003541 4.1e-42 176.0 293 41.6
PGSC0003DMG400007079 Solanum tuberosum HOM05D001692 ORTHO05D003541 7.1e-42 175.3 302 41.4
PGSC0003DMG400008571 Solanum tuberosum HOM05D001692 ORTHO05D003541 7.1e-42 175.3 291 38.5
Gohir.A07G155726 Gossypium hirsutum HOM05D001692 ORTHO05D003541 2.7e-41 173.3 291 40.2
Sc16g0007860 Simmondsia chinensis HOM05D001692 ORTHO05D003541 2.7e-41 173.3 299 41.8
Solyc12g011420.2 Solanum lycopersicum HOM05D001692 ORTHO05D003541 6.0e-41 172.2 291 38.8
CAN.G315.9 Capsicum annuum HOM05D001692 ORTHO05D003541 1.0e-40 171.4 293 37.9
Sopen12g006770 Solanum pennellii HOM05D001692 ORTHO05D003541 1.0e-40 171.4 291 39.2
MBI10_g02221_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D003541 1.3e-40 171.0 311 41.5
MD03G1254300 Malus domestica HOM05D001692 ORTHO05D003541 1.3e-40 171.0 88 100.0
AUR62019704 Chenopodium quinoa HOM05D001692 ORTHO05D003541 3.0e-40 169.9 293 40.3
Solyc07g061950.4 Solanum lycopersicum HOM05D001692 ORTHO05D003541 8.6e-40 168.3 260 42.7
HanXRQChr03g0072701 Helianthus annuus HOM05D001692 ORTHO05D003541 1.2e-38 164.5 306 39.2
Gohir.A04G046400 Gossypium hirsutum HOM05D001692 ORTHO05D003541 2.1e-38 163.7 291 40.2
ECA240G0884 Erigeron canadensis HOM05D001692 ORTHO05D003541 4.7e-38 162.5 306 40.2
HanXRQChr12g0373531 Helianthus annuus HOM05D001692 ORTHO05D003541 2.4e-37 160.2 247 42.1
Lsat_1_v5_gn_9_101380 Lactuca sativa HOM05D001692 ORTHO05D003541 4.0e-37 159.5 303 38.6
EL10Ac4g08465 Beta vulgaris HOM05D001692 ORTHO05D003541 5.2e-37 159.1 291 38.8
MBI07_g26364_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D003541 1.2e-36 157.9 291 36.4
Lsat_1_v5_gn_5_126041 Lactuca sativa HOM05D001692 ORTHO05D003541 2.6e-36 156.8 308 38.0
HanXRQChr10g0305681 Helianthus annuus HOM05D001692 ORTHO05D003541 9.9e-36 154.8 307 39.4
Ah.06g187540 Amaranthus hybridus HOM05D001692 ORTHO05D003541 2.2e-35 153.7 292 39.4
PSO541G4432 Papaver somniferum HOM05D001692 ORTHO05D003541 8.4e-35 151.8 293 38.2
PSO675G5015 Papaver somniferum HOM05D001692 ORTHO05D003541 2.4e-34 150.2 276 36.2
ECA234G0027 Erigeron canadensis HOM05D001692 ORTHO05D003541 5.4e-34 149.1 314 36.0
unitig_62.g23092 Utricularia gibba HOM05D001692 ORTHO05D003541 9.3e-34 148.3 298 38.3
Oeu006135.1 Olea europaea HOM05D001692 ORTHO05D003541 2.3e-32 143.7 229 42.4
HPP92_002947 Vanilla planifolia HOM05D001692 ORTHO05D003541 3.9e-32 142.9 292 35.3
Zm00001eb203260 Zea mays HOM05D001692 ORTHO05D003541 3.3e-31 139.8 298 34.2
PSO541G5530 Papaver somniferum HOM05D001692 ORTHO05D003541 6.2e-30 135.6 276 34.4
Os02g0313700 Oryza sativa ssp. japonica HOM05D001692 ORTHO05D003541 1.4e-29 134.4 299 34.4
ATR0585G029 Amborella trichopoda HOM05D001692 ORTHO05D003541 2.6e-28 130.2 308 36.7
C01p49900 Brassica napus HOM05D001692 ORTHO05D003541 2.2e-27 127.1 290 33.8
BolC1t04947H Brassica oleracea HOM05D001692 ORTHO05D003541 2.2e-27 127.1 290 33.8
CDE02G2341 Ceratophyllum demersum HOM05D001692 ORTHO05D003541 6.4e-27 125.6 291 31.3
SHI27675 Sapria himalayana HOM05D001692 ORTHO05D003541 7.1e-26 122.1 298 34.2
Oeu006143.2 Olea europaea HOM05D001692 ORTHO05D003541 5.1e-24 115.9 177 42.4
Oeu026469.1 Olea europaea HOM05D001692 ORTHO05D003541 5.1e-24 115.9 252 33.3
PGR083G0018 Punica granatum HOM05D001692 ORTHO05D003541 1.1e-23 114.8 154 44.2
Zm00001eb336950 Zea mays HOM05D001692 ORTHO05D003541 1.8e-21 107.5 308 31.8
Os01g0242600 Oryza sativa ssp. japonica HOM05D001692 ORTHO05D003541 2.8e-14 83.6 306 27.8
SalBow8G2367 Salvia bowleyana HOM05D001692 ORTHO05D003541 4.5e-12 76.3 358 27.7
Gorai.009G359900 Gossypium raimondii HOM05D001692 ORTHO05D003541 1.9e-10 70.9 50 62.0
HanXRQChr07g0206481 Helianthus annuus HOM05D001692 ORTHO05D003541 1.2e-09 68.2 76 44.7
ECA234G1174 Erigeron canadensis HOM05D001692 ORTHO05D003541 2.7e-09 67.0 170 29.4
Pp3c18_18010 Physcomitrium patens HOM05D001692 ORTHO05D003541 3.3e-07 60.1 42 57.1
BcaB08g35411 Brassica carinata HOM05D001692 ORTHO05D003541 4.3e-07 59.7 45 64.4
CBR_g24050 Chara braunii HOM05D001692 ORTHO05D003541 2.8e-06 57.0 138 31.9


User provided reference genes

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