Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 1.2e-67 259.6 121 100.0
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.2e-54 216.5 132 78.0
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.2e-54 216.5 130 80.0
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.2e-54 216.5 129 81.4
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 5.7e-54 214.2 133 77.4
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 9.7e-54 213.4 130 80.0
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.7e-53 212.6 132 77.3
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 2.2e-53 212.2 132 77.3
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-53 212.2 132 77.3
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-53 212.2 132 77.3
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-53 212.2 132 77.3
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.8e-53 211.8 132 77.3
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.8e-53 211.8 132 77.3
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.7e-53 211.5 130 76.9
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.8e-53 211.1 132 77.3
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.8e-53 211.1 132 77.3
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 6.3e-53 210.7 132 75.8
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 8.2e-53 210.3 130 76.2
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 8.2e-53 210.3 130 76.2
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 8.2e-53 210.3 130 76.2
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 8.2e-53 210.3 132 76.5
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 8.2e-53 210.3 130 76.2
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.1e-52 209.9 130 76.2
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 1.4e-52 209.5 132 75.8
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.8e-52 209.1 132 75.0
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.8e-52 209.1 130 76.9
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 2.4e-52 208.8 130 76.2
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.4e-52 208.8 132 74.2
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.4e-52 208.8 132 75.8
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 2.4e-52 208.8 132 76.5
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 3.1e-52 208.4 130 75.4
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 3.1e-52 208.4 132 75.8
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 3.1e-52 208.4 132 74.2
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 4.1e-52 208.0 130 75.4
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 4.1e-52 208.0 130 75.4
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 4.1e-52 208.0 130 75.4
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 4.1e-52 208.0 130 75.4
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 4.1e-52 208.0 130 75.4
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 4.1e-52 208.0 130 75.4
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 4.1e-52 208.0 132 75.8
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 4.1e-52 208.0 132 75.8
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 4.1e-52 208.0 132 75.0
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 5.3e-52 207.6 130 75.4
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 5.3e-52 207.6 132 75.8
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 5.3e-52 207.6 132 75.8
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 7.0e-52 207.2 130 75.4
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 7.0e-52 207.2 130 75.4
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 7.0e-52 207.2 129 76.0
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 9.1e-52 206.8 130 75.4
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.2e-51 206.5 130 75.4
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.2e-51 206.5 130 75.4
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 1.2e-51 206.5 132 75.0
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 1.6e-51 206.1 132 75.0
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 1.6e-51 206.1 124 76.6
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 1.6e-51 206.1 124 76.6
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 1.6e-51 206.1 132 74.2
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.6e-51 206.1 132 74.2
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.6e-51 206.1 132 76.5
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 2.0e-51 205.7 132 75.8
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 2.0e-51 205.7 132 75.0
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 2.0e-51 205.7 129 76.7
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 2.0e-51 205.7 132 75.8
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 2.7e-51 205.3 132 74.2
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 2.7e-51 205.3 132 74.2
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 4.5e-51 204.5 132 75.0
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 4.5e-51 204.5 132 74.2
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 5.9e-51 204.1 132 75.0
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 5.9e-51 204.1 132 75.8
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.9e-51 204.1 132 75.0
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 5.9e-51 204.1 132 73.5
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 7.7e-51 203.8 130 73.8
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 7.7e-51 203.8 132 72.7
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.0e-50 203.4 132 74.2
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.0e-50 203.4 132 73.5
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 1.0e-50 203.4 133 72.2
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 1.3e-50 203.0 132 73.5
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 1.7e-50 202.6 132 73.5
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 1.7e-50 202.6 132 73.5
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.7e-50 202.6 132 72.7
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 1.7e-50 202.6 132 72.7
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 2.2e-50 202.2 132 73.5
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 2.2e-50 202.2 132 74.2
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 2.2e-50 202.2 132 74.2
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.9e-50 201.8 132 72.0
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 3.8e-50 201.4 132 74.2
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.0e-50 201.1 130 73.1
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.0e-50 201.1 130 73.1
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 6.5e-50 200.7 132 74.2
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 6.5e-50 200.7 132 73.5
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.1e-49 199.9 132 72.0
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.9e-49 199.1 132 72.7
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.5e-49 198.7 132 70.5
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.2e-49 198.4 132 72.0
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 3.2e-49 198.4 132 73.5
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.2e-49 198.0 129 72.9
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 4.2e-49 198.0 132 71.2
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 4.2e-49 198.0 132 71.2
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 5.5e-49 197.6 132 73.5
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 1.6e-48 196.1 132 69.7
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.6e-48 196.1 135 71.9
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 2.1e-48 195.7 130 73.1
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 2.7e-48 195.3 130 72.3
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 3.6e-48 194.9 132 72.7
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 6.1e-48 194.1 132 70.5
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 8.0e-48 193.7 103 84.5
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 8.0e-48 193.7 132 71.2
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 8.0e-48 193.7 132 71.2
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 8.0e-48 193.7 132 72.0
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 8.0e-48 193.7 132 70.5
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.0e-47 193.4 132 69.7
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.0e-47 193.4 132 72.0
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 1.0e-47 193.4 130 72.3
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 1.0e-47 193.4 132 72.0
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 1.4e-47 193.0 132 69.7
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.8e-47 192.6 132 72.0
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 2.3e-47 192.2 130 70.8
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 4.0e-47 191.4 132 72.0
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 5.2e-47 191.0 130 72.3
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 5.2e-47 191.0 132 69.7
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 8.8e-47 190.3 132 70.5
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 8.8e-47 190.3 132 68.9
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 2.6e-46 188.7 130 71.5
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 2.6e-46 188.7 132 68.9
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 2.6e-46 188.7 132 69.7
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 2.6e-46 188.7 132 69.7
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 2.8e-45 185.3 120 72.5
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 6.3e-45 184.1 126 71.4
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 8.3e-45 183.7 103 82.5
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 8.3e-45 183.7 132 67.4
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.4e-44 183.0 132 65.9
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.4e-44 182.2 132 66.7
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 4.1e-44 181.4 130 66.9
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 7.0e-44 180.6 132 66.7
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 1.2e-43 179.9 130 66.2
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 2.0e-43 179.1 130 66.2
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.7e-43 178.7 130 65.4
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 2.7e-43 178.7 130 65.4
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 7.7e-43 177.2 129 66.7
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 7.7e-43 177.2 130 66.2
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 1.0e-42 176.8 132 66.7
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.9e-42 175.3 188 51.1
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 8.5e-42 173.7 123 66.7
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 8.8e-39 163.7 132 60.6
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 7.0e-36 154.1 130 59.2
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.3e-34 149.1 123 57.7
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 5.0e-34 147.9 123 54.5
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.7e-29 131.7 116 62.1
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 1.0e-26 123.6 117 52.1
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 5.0e-26 121.3 117 52.1
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 5.0e-26 121.3 116 50.0
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 2.5e-25 119.0 117 49.6
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 1.0e-23 113.6 87 67.8
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.3e-23 112.5 135 46.7
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 7.5e-22 107.5 87 63.2
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 3.2e-20 102.1 117 43.6
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.3e-18 96.7 56 75.0
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 8.6e-18 94.0 71 67.6
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.1e-17 93.6 85 55.3
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.3e-17 92.0 105 40.0
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 9.5e-17 90.5 69 71.0
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 1.6e-16 89.7 45 80.0
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.6e-16 89.7 41 90.2
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.6e-16 89.7 104 39.4
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.7e-16 88.2 103 40.8
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.7e-16 88.2 103 40.8
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 8.1e-16 87.4 65 61.5
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 6.8e-15 84.3 91 49.5
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 4.9e-13 78.2 47 72.3
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 4.9e-13 78.2 88 52.3
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 7.1e-12 74.3 55 63.6
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 9.2e-12 73.9 86 50.0
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.3e-10 70.1 36 75.0
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 6.6e-10 67.8 93 36.6
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 6.6e-10 67.8 93 36.6
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 6.8e-07 57.8 72 33.3


User provided reference genes

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