Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 7.2e-45 183.7 106 100.0
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 4.7e-36 154.5 101 92.1
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 1.7e-30 136.0 92 87.0
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 1.6e-23 112.8 86 76.7
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 3.3e-21 105.1 92 72.8
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 7.3e-21 104.0 87 67.8
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 7.3e-21 104.0 85 70.6
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.3e-21 104.0 85 70.6
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.3e-21 104.0 85 70.6
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.5e-21 103.6 91 70.3
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 1.2e-20 103.2 91 64.8
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 2.1e-20 102.4 89 65.2
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.6e-20 101.7 85 69.4
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 1.1e-19 100.1 92 67.4
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 1.4e-19 99.8 89 62.9
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 1.4e-19 99.8 89 65.2
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 1.8e-19 99.4 90 68.9
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 2.3e-19 99.0 81 69.1
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 3.1e-19 98.6 81 67.9
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 8.9e-19 97.1 82 67.1
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 8.9e-19 97.1 85 64.7
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 1.2e-18 96.7 92 60.9
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 1.5e-18 96.3 84 66.7
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 5.8e-18 94.4 91 65.9
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 9.8e-18 93.6 83 60.2
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 2.9e-17 92.0 85 63.5
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 4.9e-17 91.3 88 60.2
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 4.9e-17 91.3 79 62.0
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 6.4e-17 90.9 91 59.3
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 8.3e-17 90.5 82 62.2
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 8.3e-17 90.5 85 61.2
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 1.1e-16 90.1 78 61.5
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 1.4e-16 89.7 78 60.3
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 2.4e-16 89.0 95 58.9
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 4.1e-16 88.2 84 64.3
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 4.1e-16 88.2 81 64.2
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 4.1e-16 88.2 84 57.1
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 7.1e-16 87.4 77 62.3
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 7.1e-16 87.4 89 59.6
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 9.2e-16 87.0 84 59.5
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 1.2e-15 86.7 82 57.3
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 2.1e-15 85.9 79 59.5
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.1e-15 85.9 89 57.3
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.7e-15 85.5 89 59.6
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 3.5e-15 85.1 85 62.4
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 3.5e-15 85.1 87 59.8
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 4.6e-15 84.7 81 61.7
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 6.0e-15 84.3 82 58.5
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 6.0e-15 84.3 87 57.5
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 7.8e-15 84.0 89 60.7
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 7.8e-15 84.0 89 58.4
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 7.8e-15 84.0 90 53.3
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 1.0e-14 83.6 86 61.6
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.0e-14 83.6 91 56.0
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.0e-14 83.6 91 56.0
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.3e-14 83.2 90 54.4
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 1.3e-14 83.2 88 56.8
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 1.3e-14 83.2 93 55.9
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 1.7e-14 82.8 89 52.8
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 3.0e-14 82.0 88 56.8
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 3.9e-14 81.6 84 61.9
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 3.9e-14 81.6 84 61.9
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 3.9e-14 81.6 86 60.5
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 3.9e-14 81.6 90 52.2
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 5.1e-14 81.3 81 58.0
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 6.6e-14 80.9 88 56.8
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 6.6e-14 80.9 92 57.6
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 1.1e-13 80.1 86 59.3
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 1.1e-13 80.1 91 58.2
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.5e-13 79.7 89 55.1
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 1.9e-13 79.3 89 55.1
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.9e-13 79.3 89 55.1
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 2.5e-13 79.0 90 55.6
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 2.5e-13 79.0 86 59.3
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 2.5e-13 79.0 86 59.3
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 2.5e-13 79.0 86 59.3
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 2.5e-13 79.0 86 58.1
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 2.5e-13 79.0 90 54.4
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 3.3e-13 78.6 90 55.6
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 3.3e-13 78.6 84 54.8
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 5.6e-13 77.8 90 55.6
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 5.6e-13 77.8 94 53.2
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 7.3e-13 77.4 92 47.8
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 7.3e-13 77.4 90 51.1
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 7.3e-13 77.4 67 68.7
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 7.3e-13 77.4 81 56.8
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 9.5e-13 77.0 90 54.4
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 9.5e-13 77.0 90 54.4
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 9.5e-13 77.0 92 53.3
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 1.6e-12 76.3 90 54.4
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 1.6e-12 76.3 90 54.4
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 1.6e-12 76.3 86 53.5
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 2.8e-12 75.5 93 53.8
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 3.1e-11 72.0 84 54.8
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 4.0e-11 71.6 93 49.5
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 5.2e-11 71.2 90 52.2
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 5.2e-11 71.2 93 48.4
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 6.8e-11 70.9 82 51.2
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.5e-10 69.7 83 50.6
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 4.4e-10 68.2 81 50.6
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.7e-09 66.2 82 48.8
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.7e-09 66.2 95 48.4
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 2.9e-09 65.5 85 45.9
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 8.4e-09 63.9 63 63.5
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 1.4e-08 63.2 84 47.6
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 9.2e-08 60.5 88 43.2
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 2.1e-07 59.3 86 46.5
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 4.6e-07 58.2 82 46.3


User provided reference genes

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