Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1163300 Malus domestica HOM05D003251 ORTHO05D003770 1.9e-234 815.5 408 100.0
MD17G1133500 Malus domestica HOM05D003251 ORTHO05D003770 1.6e-180 636.3 315 100.0
MD09G1146900 Malus domestica HOM05D003251 ORTHO05D003770 1.6e-164 583.2 343 87.2
Prupe.3G178400 Prunus persica HOM05D003251 ORTHO05D003770 2.9e-150 535.8 343 81.9
RcHm_v2.0_Chr2g0152321 Rosa chinensis HOM05D003251 ORTHO05D003770 8.5e-118 427.9 350 67.4
FAN02G1383 Fragaria x ananassa HOM05D003251 ORTHO05D003770 4.8e-113 412.1 350 64.6
FAN09G3830 Fragaria x ananassa HOM05D003251 ORTHO05D003770 1.2e-111 407.5 353 63.5
FvH4_6g38770 Fragaria vesca HOM05D003251 ORTHO05D003770 1.0e-110 404.4 350 63.7
FAN14G2842 Fragaria x ananassa HOM05D003251 ORTHO05D003770 1.3e-110 404.1 350 64.0
FAN05G1089 Fragaria x ananassa HOM05D003251 ORTHO05D003770 2.5e-109 399.8 350 63.7
QL08p045144 Quercus lobata HOM05D003251 ORTHO05D003770 1.0e-86 324.7 354 52.5
Cfa023559 Carpinus fangiana HOM05D003251 ORTHO05D003770 5.0e-86 322.4 351 54.1
Haze_13578 Corylus avellana HOM05D003251 ORTHO05D003770 8.6e-86 321.6 351 53.6
Atru.chr6.2025 Acer truncatum HOM05D003251 ORTHO05D003770 5.5e-85 318.9 356 53.7
Manes.01G131000 Manihot esculenta HOM05D003251 ORTHO05D003770 3.4e-82 309.7 341 52.8
Potri.002G057000 Populus trichocarpa HOM05D003251 ORTHO05D003770 2.4e-80 303.5 350 52.0
Ciclev10031282m.g Citrus clementina HOM05D003251 ORTHO05D003770 5.4e-80 302.4 353 51.0
Thecc.01G167800 Theobroma cacao HOM05D003251 ORTHO05D003770 2.7e-79 300.1 347 53.6
CiPaw.03G190500 Carya illinoinensis HOM05D003251 ORTHO05D003770 5.9e-79 298.9 315 53.7
Sabra05G0156300 Salix brachista HOM05D003251 ORTHO05D003770 5.9e-79 298.9 332 52.4
Potri.005G205700 Populus trichocarpa HOM05D003251 ORTHO05D003770 5.0e-78 295.8 325 53.5
Sabra02G0046300 Salix brachista HOM05D003251 ORTHO05D003770 5.6e-77 292.4 363 47.4
Sed0014508 Sechium edule HOM05D003251 ORTHO05D003770 2.1e-76 290.4 342 50.6
Duzib138G1023 Durio zibethinus HOM05D003251 ORTHO05D003770 1.8e-75 287.3 334 53.0
ClCG07G010750 Citrullus lanatus HOM05D003251 ORTHO05D003770 2.2e-73 280.4 331 51.7
Manes.02G089300 Manihot esculenta HOM05D003251 ORTHO05D003770 2.9e-73 280.0 335 50.7
GSVIVG01020830001 Vitis vinifera HOM05D003251 ORTHO05D003770 4.9e-73 279.3 350 51.4
CSS0030132 Camellia sinensis var. sinensis HOM05D003251 ORTHO05D003770 6.6e-70 268.9 355 47.3
TWI59G1422 Tripterygium wilfordii HOM05D003251 ORTHO05D003770 1.1e-69 268.1 346 49.1
Dinv15661 Davidia involucrata HOM05D003251 ORTHO05D003770 8.0e-68 261.9 369 49.3
CANSAT64G1833 Cannabis sativa HOM05D003251 ORTHO05D003770 2.2e-65 253.8 309 51.1
Gohir.A07G182600 Gossypium hirsutum HOM05D003251 ORTHO05D003770 3.7e-65 253.1 333 49.5
Gohir.1Z049461 Gossypium hirsutum HOM05D003251 ORTHO05D003770 4.9e-65 252.7 323 49.8
Gorai.001G211000 Gossypium raimondii HOM05D003251 ORTHO05D003770 4.9e-65 252.7 333 49.5
COL.COLO4_04817 Corchorus olitorius HOM05D003251 ORTHO05D003770 1.1e-64 251.5 336 47.6
Sed0023993 Sechium edule HOM05D003251 ORTHO05D003770 1.1e-61 241.5 334 47.6
Actinidia18852 Actinidia chinensis HOM05D003251 ORTHO05D003770 5.6e-61 239.2 323 46.7
CsaV3_4G007570 Cucumis sativus L. HOM05D003251 ORTHO05D003770 5.6e-61 239.2 340 45.0
TAR626G1483 Trochodendron aralioides HOM05D003251 ORTHO05D003770 1.2e-60 238.0 324 47.2
Actinidia35167 Actinidia chinensis HOM05D003251 ORTHO05D003770 4.7e-60 236.1 323 48.0
Eucgr.K01238 Eucalyptus grandis HOM05D003251 ORTHO05D003770 6.8e-59 232.3 342 43.3
Rhsim05G0166800 Rhododendron simsii HOM05D003251 ORTHO05D003770 5.8e-58 229.2 321 46.7
vmacro19571 Vaccinium macrocarpon HOM05D003251 ORTHO05D003770 4.9e-57 226.1 320 44.7
MELO3C016184.2 Cucumis melo HOM05D003251 ORTHO05D003770 6.4e-57 225.7 342 45.3
PGR042G3279 Punica granatum HOM05D003251 ORTHO05D003770 1.4e-56 224.6 337 46.3
TWI14G0046 Tripterygium wilfordii HOM05D003251 ORTHO05D003770 4.1e-56 223.0 339 44.8
Hma1.2p1_0734F.1_g210390 Hydrangea macrophylla HOM05D003251 ORTHO05D003770 7.1e-56 222.2 332 44.6
Hma1.2p1_2465F.1_g322630 Hydrangea macrophylla HOM05D003251 ORTHO05D003770 1.6e-55 221.1 329 45.3
Nn7g38011 Nelumbo nucifera HOM05D003251 ORTHO05D003770 3.0e-54 216.9 338 41.1
AT1G06660 Arabidopsis thaliana HOM05D003251 ORTHO05D003770 4.3e-53 213.0 332 45.2
THA.LOC104800816 Tarenaya hassleriana HOM05D003251 ORTHO05D003770 3.6e-52 209.9 322 44.4
THA.LOC104826243 Tarenaya hassleriana HOM05D003251 ORTHO05D003770 4.7e-52 209.5 337 43.9
Carub.0001s0599 Capsella rubella HOM05D003251 ORTHO05D003770 3.1e-51 206.8 330 45.5
Glyma.02G283700 Glycine max HOM05D003251 ORTHO05D003770 6.8e-51 205.7 318 41.2
Oeu056851.1 Olea europaea HOM05D003251 ORTHO05D003770 8.9e-51 205.3 361 43.2
AL1G16670 Arabidopsis lyrata HOM05D003251 ORTHO05D003770 1.2e-50 204.9 332 44.6
Cc08_g11770 Coffea canephora HOM05D003251 ORTHO05D003770 2.6e-50 203.8 326 42.9
Thhalv10007468m.g Eutrema salsugineum HOM05D003251 ORTHO05D003770 1.3e-49 201.4 325 44.3
TPR.G26007 Trifolium pratense HOM05D003251 ORTHO05D003770 4.9e-49 199.5 346 41.3
C08p02660 Brassica napus HOM05D003251 ORTHO05D003770 2.4e-48 197.2 329 44.1
Lalb_Chr04g0248951 Lupinus albus HOM05D003251 ORTHO05D003770 4.2e-48 196.4 317 41.0
Ca_06258_v3 Cicer arietinum L. HOM05D003251 ORTHO05D003770 5.4e-48 196.1 344 42.7
A08p35910 Brassica napus HOM05D003251 ORTHO05D003770 1.2e-47 194.9 327 43.4
BraA08t35498Z Brassica rapa HOM05D003251 ORTHO05D003770 1.2e-47 194.9 327 43.7
BolC8t47062H Brassica oleracea HOM05D003251 ORTHO05D003770 1.6e-47 194.5 329 44.4
Medtr5g090900 Medicago truncatula HOM05D003251 ORTHO05D003770 2.1e-47 194.1 331 42.0
VMungo0647G1540 Vigna mungo HOM05D003251 ORTHO05D003770 2.1e-47 194.1 331 40.2
LjContig00049g0008406 Lotus japonicus HOM05D003251 ORTHO05D003770 2.7e-47 193.7 338 39.9
Solyc07g045010.3 Solanum lycopersicum HOM05D003251 ORTHO05D003770 6.0e-47 192.6 331 42.0
Ca_14585_v3 Cicer arietinum L. HOM05D003251 ORTHO05D003770 1.0e-46 191.8 316 39.6
Sopen07g023570 Solanum pennellii HOM05D003251 ORTHO05D003770 1.0e-46 191.8 331 41.7
arahy.Tifrunner.gnm1.ann1.0D8J24 Arachis hypogaea HOM05D003251 ORTHO05D003770 1.3e-46 191.4 399 36.3
Aa31LG6G9100 Aethionema arabicum HOM05D003251 ORTHO05D003770 1.7e-46 191.0 318 44.3
MBI01_g06560_MAGBIO Magnolia biondii HOM05D003251 ORTHO05D003770 3.0e-46 190.3 342 43.3
Glyma.14G030800 Glycine max HOM05D003251 ORTHO05D003770 2.5e-45 187.2 319 40.4
PSO675G1700 Papaver somniferum HOM05D003251 ORTHO05D003770 3.3e-45 186.8 335 41.2
Nitab4.5_0008720g0010 Nicotiana tabacum HOM05D003251 ORTHO05D003770 2.1e-44 184.1 334 40.4
Cpa.g.sc50.118 Carica papaya HOM05D003251 ORTHO05D003770 8.1e-44 182.2 251 47.8
Phvul.008G195700 Phaseolus vulgaris HOM05D003251 ORTHO05D003770 8.1e-44 182.2 329 38.6
arahy.Tifrunner.gnm1.ann1.RBT75F Arachis hypogaea HOM05D003251 ORTHO05D003770 2.4e-43 180.6 395 34.2
Lj8A97T49 Lonicera japonica HOM05D003251 ORTHO05D003770 2.4e-43 180.6 329 41.9
Sp1g05380 Schrenkiella parvula HOM05D003251 ORTHO05D003770 2.4e-43 180.6 304 43.8
Nitab4.5_0001552g0070 Nicotiana tabacum HOM05D003251 ORTHO05D003770 3.1e-43 180.3 330 40.3
A10p05260 Brassica napus HOM05D003251 ORTHO05D003770 5.3e-43 179.5 337 40.7
DCAR_013326 Daucus carota HOM05D003251 ORTHO05D003770 5.3e-43 179.5 322 42.2
BolC5t29257H Brassica oleracea HOM05D003251 ORTHO05D003770 9.0e-43 178.7 332 41.6
BraA10t42791Z Brassica rapa HOM05D003251 ORTHO05D003770 1.5e-42 177.9 333 41.1
C05p04850 Brassica napus HOM05D003251 ORTHO05D003770 3.4e-42 176.8 330 40.9
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 3.4e-42 176.8 320 41.6
PGSC0003DMG400000929 Solanum tuberosum HOM05D003251 ORTHO05D003770 9.9e-42 175.3 362 38.7
TPR.G25285 Trifolium pratense HOM05D003251 ORTHO05D003770 9.9e-42 175.3 316 38.3
DCAR_023044 Daucus carota HOM05D003251 ORTHO05D003770 1.7e-41 174.5 330 41.5
Medtr3g450760 Medicago truncatula HOM05D003251 ORTHO05D003770 2.2e-41 174.1 307 41.0
Sopen12g002220 Solanum pennellii HOM05D003251 ORTHO05D003770 6.4e-41 172.6 332 41.6
MSTRG.14102 Avicennia marina HOM05D003251 ORTHO05D003770 4.2e-40 169.9 321 37.1
PGSC0003DMG400028816 Solanum tuberosum HOM05D003251 ORTHO05D003770 5.4e-40 169.5 330 41.8
Eucgr.A02029 Eucalyptus grandis HOM05D003251 ORTHO05D003770 6.0e-39 166.0 212 46.7
Sc06g0009760 Simmondsia chinensis HOM05D003251 ORTHO05D003770 1.7e-38 164.5 333 38.7
Solyc12g006270.2 Solanum lycopersicum HOM05D003251 ORTHO05D003770 1.7e-38 164.5 330 40.0
CAN.G1500.6 Capsicum annuum HOM05D003251 ORTHO05D003770 6.6e-38 162.5 337 39.8
Nitab4.5_0003208g0060 Nicotiana tabacum HOM05D003251 ORTHO05D003770 1.1e-37 161.8 334 39.5
Lj1A588T24 Lonicera japonica HOM05D003251 ORTHO05D003770 1.5e-37 161.4 342 42.1
HanXRQChr17g0541161 Helianthus annuus HOM05D003251 ORTHO05D003770 1.9e-37 161.0 319 38.9
Nitab4.5_0001229g0020 Nicotiana tabacum HOM05D003251 ORTHO05D003770 3.3e-37 160.2 328 39.3
CARHR006330 Cardamine hirsuta HOM05D003251 ORTHO05D003770 1.3e-36 158.3 268 44.4
Lj6g0022221 Lotus japonicus HOM05D003251 ORTHO05D003770 4.8e-36 156.4 299 38.8
SGA_v2.0_scaffold49G18391 Striga asiatica HOM05D003251 ORTHO05D003770 4.8e-36 156.4 338 38.5
Psat5g198200 Pisum sativum HOM05D003251 ORTHO05D003770 8.1e-36 155.6 316 37.7
ATR0763G034 Amborella trichopoda HOM05D003251 ORTHO05D003770 1.1e-35 155.2 365 36.4
Aqoxy1G01562 Aquilegia oxysepala HOM05D003251 ORTHO05D003770 1.4e-35 154.8 333 36.6
DCAR_009819 Daucus carota HOM05D003251 ORTHO05D003770 4.0e-35 153.3 315 40.3
Phvul.006G023700 Phaseolus vulgaris HOM05D003251 ORTHO05D003770 3.4e-34 150.2 323 36.2
Lsat_1_v5_gn_3_35120 Lactuca sativa HOM05D003251 ORTHO05D003770 4.5e-34 149.8 320 38.1
Migut.H01275 Erythranthe guttata HOM05D003251 ORTHO05D003770 1.7e-33 147.9 313 34.5
PSO675G1711 Papaver somniferum HOM05D003251 ORTHO05D003770 1.4e-32 144.8 344 36.0
Glyma.18G111600 Glycine max HOM05D003251 ORTHO05D003770 1.9e-32 144.4 298 38.3
ECA233G2088 Erigeron canadensis HOM05D003251 ORTHO05D003770 4.2e-32 143.3 297 38.4
Psat2g017400 Pisum sativum HOM05D003251 ORTHO05D003770 2.7e-31 140.6 314 36.3
Lsat_1_v5_gn_8_33181 Lactuca sativa HOM05D003251 ORTHO05D003770 4.6e-31 139.8 298 38.9
AT2G30820 Arabidopsis thaliana HOM05D003251 ORTHO05D003770 7.9e-31 139.0 305 37.4
BcaC07g36797 Brassica carinata HOM05D003251 ORTHO05D003770 3.9e-30 136.7 329 36.5
BcaB06g28387 Brassica carinata HOM05D003251 ORTHO05D003770 5.6e-29 132.9 312 35.9
Aa31LG1G7700 Aethionema arabicum HOM05D003251 ORTHO05D003770 7.4e-29 132.5 254 40.9
AL4G25750 Arabidopsis lyrata HOM05D003251 ORTHO05D003770 7.4e-29 132.5 310 36.5
Glyma.08G306600 Glycine max HOM05D003251 ORTHO05D003770 1.6e-28 131.3 302 34.4
Lalb_Chr15g0081031 Lupinus albus HOM05D003251 ORTHO05D003770 1.1e-27 128.6 267 38.2
arahy.Tifrunner.gnm1.ann1.1PUV9L Arachis hypogaea HOM05D003251 ORTHO05D003770 1.5e-26 124.8 287 35.5
arahy.Tifrunner.gnm1.ann1.QM6TI7 Arachis hypogaea HOM05D003251 ORTHO05D003770 2.0e-26 124.4 287 35.5
Sp4g13300 Schrenkiella parvula HOM05D003251 ORTHO05D003770 2.2e-25 120.9 313 34.2
Thhalv10017740m.g Eutrema salsugineum HOM05D003251 ORTHO05D003770 8.4e-25 119.0 274 36.9
arahy.Tifrunner.gnm1.ann1.FIF49B Arachis hypogaea HOM05D003251 ORTHO05D003770 1.1e-24 118.6 287 34.8
Cc08_g11750 Coffea canephora HOM05D003251 ORTHO05D003770 1.9e-24 117.9 240 35.8
arahy.Tifrunner.gnm1.ann1.XDTP3U Arachis hypogaea HOM05D003251 ORTHO05D003770 4.2e-24 116.7 275 34.2
BcaB01g04080 Brassica carinata HOM05D003251 ORTHO05D003770 9.3e-24 115.5 306 33.3
MSTRG.14900 Avicennia marina HOM05D003251 ORTHO05D003770 1.0e-22 112.1 324 30.6
VMungo0540G1164 Vigna mungo HOM05D003251 ORTHO05D003770 1.0e-22 112.1 322 31.4
BolC3t14406H Brassica oleracea HOM05D003251 ORTHO05D003770 1.8e-22 111.3 282 34.8
Hund08247 Selenicereus undatus HOM05D003251 ORTHO05D003770 2.5e-21 107.5 322 30.1
C03p20320 Brassica napus HOM05D003251 ORTHO05D003770 7.4e-21 105.9 281 33.1
CAN.G275.14 Capsicum annuum HOM05D003251 ORTHO05D003770 4.8e-20 103.2 260 38.5
Aqoxy4G00020 Aquilegia oxysepala HOM05D003251 ORTHO05D003770 3.1e-19 100.5 240 35.4
SGA_v2.0_scaffold73G24475 Striga asiatica HOM05D003251 ORTHO05D003770 3.4e-18 97.1 278 31.7
Gohir.D07G189401 Gossypium hirsutum HOM05D003251 ORTHO05D003770 7.6e-18 95.9 123 47.2
Peaxi162Scf00359g00096 Petunia axillaris HOM05D003251 ORTHO05D003770 1.7e-17 94.7 200 43.5
BcaNung05938 Brassica carinata HOM05D003251 ORTHO05D003770 3.8e-17 93.6 308 30.8
TWI23G0104 Tripterygium wilfordii HOM05D003251 ORTHO05D003770 1.1e-16 92.0 154 38.3
Carub.0004s1203 Capsella rubella HOM05D003251 ORTHO05D003770 3.2e-16 90.5 310 31.6
HanXRQChr13g0387591 Helianthus annuus HOM05D003251 ORTHO05D003770 4.2e-16 90.1 207 36.2
A04p23500 Brassica napus HOM05D003251 ORTHO05D003770 7.1e-16 89.4 306 30.7
AUR62017590 Chenopodium quinoa HOM05D003251 ORTHO05D003770 9.3e-16 89.0 283 28.6
BraA04t17877Z Brassica rapa HOM05D003251 ORTHO05D003770 1.3e-14 85.1 270 31.9
EL10Ac9g22841 Beta vulgaris HOM05D003251 ORTHO05D003770 3.0e-14 84.0 325 27.7
CARHR124290 Cardamine hirsuta HOM05D003251 ORTHO05D003770 5.1e-14 83.2 264 34.8
BraA03t10994Z Brassica rapa HOM05D003251 ORTHO05D003770 4.3e-13 80.1 260 33.8
FAN23G0792 Fragaria x ananassa HOM05D002747 ORTHO05D003770 5.7e-13 79.7 57 70.2
Actinidia27823 Actinidia chinensis HOM05D003251 ORTHO05D003770 8.2e-12 75.9 71 54.9
A03p17210 Brassica napus HOM05D003251 ORTHO05D003770 8.2e-12 75.9 254 33.5
AUR62015130 Chenopodium quinoa HOM05D003251 ORTHO05D003770 6.9e-11 72.8 57 54.4
HPP92_011705 Vanilla planifolia HOM05D003251 ORTHO05D003770 2.0e-10 71.2 292 28.4
Migut.M00075 Erythranthe guttata HOM05D003251 ORTHO05D003770 2.6e-10 70.9 220 29.1
HPP92_011659 Vanilla planifolia HOM05D003251 ORTHO05D003770 1.0e-09 68.9 291 28.2
Glyma.08G303300 Glycine max HOM05D003251 ORTHO05D003770 2.2e-09 67.8 147 35.4
HPP92_013590 Vanilla planifolia HOM05D003251 ORTHO05D003770 3.8e-09 67.0 292 28.8
Ah.01g001900 Amaranthus hybridus HOM05D003251 ORTHO05D003770 6.5e-09 66.2 307 25.4
SEGI_31357 Sequoiadendron giganteum HOM05D003251 ORTHO05D003770 1.8e-06 58.2 372 23.9


User provided reference genes

Program Settings