Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1153700 Malus domestica HOM05D005765 ORTHO05D002313 6.5e-91 337.4 176 100.0
MD17G1000400 Malus domestica HOM05D005765 ORTHO05D002313 1.7e-70 269.6 194 78.9
MD09G1010200 Malus domestica HOM05D005765 ORTHO05D002313 4.4e-63 245.0 198 71.7
FvH4_6g53590 Fragaria vesca HOM05D005765 ORTHO05D002313 8.9e-56 220.7 192 66.1
RcHm_v2.0_Chr2g0175661 Rosa chinensis HOM05D005765 ORTHO05D002313 1.3e-54 216.9 191 63.4
Prupe.3G306900 Prunus persica HOM05D005765 ORTHO05D002313 3.7e-54 215.3 196 64.3
FAN14G1527 Fragaria x ananassa HOM05D005765 ORTHO05D002313 1.9e-50 203.0 232 54.3
CANSAT64G0001 Cannabis sativa HOM05D005765 ORTHO05D002313 3.6e-49 198.7 190 61.6
FAN05G2595 Fragaria x ananassa HOM05D005765 ORTHO05D002313 4.7e-49 198.4 228 53.1
FAN02G1386 Fragaria x ananassa HOM05D005765 ORTHO05D002313 3.4e-47 192.2 229 52.4
CiPaw.04G036800 Carya illinoinensis HOM05D005765 ORTHO05D002313 1.7e-46 189.9 192 63.5
QL02p071244 Quercus lobata HOM05D005765 ORTHO05D002313 2.2e-46 189.5 187 62.6
Sed0006067 Sechium edule HOM05D005765 ORTHO05D002313 2.9e-46 189.1 191 61.3
Cpa.g.sc171.10 Carica papaya HOM05D005765 ORTHO05D002313 3.7e-46 188.7 156 70.5
FAN09G1054 Fragaria x ananassa HOM05D005765 ORTHO05D002313 1.4e-45 186.8 253 48.2
Sed0017038 Sechium edule HOM05D005765 ORTHO05D002313 7.0e-45 184.5 194 58.8
CSS0026879 Camellia sinensis var. sinensis HOM05D005765 ORTHO05D002313 1.6e-44 183.3 189 58.7
TAR374G0284 Trochodendron aralioides HOM05D005765 ORTHO05D002313 4.6e-44 181.8 191 58.6
Potri.001G329500 Populus trichocarpa HOM05D005765 ORTHO05D002313 1.1e-42 177.2 195 57.9
Cfa007223 Carpinus fangiana HOM05D005765 ORTHO05D002313 3.3e-42 175.6 192 58.9
Lj7C610T3 Lonicera japonica HOM05D005765 ORTHO05D002313 3.3e-42 175.6 190 56.8
AUR62017836 Chenopodium quinoa HOM05D005765 ORTHO05D002313 9.5e-42 174.1 202 55.0
CsaV3_2G034130 Cucumis sativus L. HOM05D005765 ORTHO05D002313 9.5e-42 174.1 186 58.1
Dinv25656 Davidia involucrata HOM05D005765 ORTHO05D002313 9.5e-42 174.1 186 55.4
SalBow4G0293 Salvia bowleyana HOM05D005765 ORTHO05D002313 9.5e-42 174.1 196 55.6
SalBow4G2955 Salvia bowleyana HOM05D005765 ORTHO05D002313 9.5e-42 174.1 196 55.6
Lsat_1_v5_gn_2_93120 Lactuca sativa HOM05D005765 ORTHO05D002313 2.8e-41 172.6 192 57.8
ClCG11G007120 Citrullus lanatus HOM05D005765 ORTHO05D002313 6.2e-41 171.4 189 56.1
Gorai.006G042400 Gossypium raimondii HOM05D005765 ORTHO05D002313 6.2e-41 171.4 200 54.0
Ciclev10016825m.g Citrus clementina HOM05D005765 ORTHO05D002313 8.1e-41 171.0 197 56.9
Oeu005105.1 Olea europaea HOM05D005765 ORTHO05D002313 1.1e-40 170.6 190 54.7
Glyma.04G139200 Glycine max HOM05D005765 ORTHO05D002313 1.4e-40 170.2 195 57.4
Gohir.D09G037100 Gossypium hirsutum HOM05D005765 ORTHO05D002313 2.3e-40 169.5 200 53.5
Gohir.A09G036100 Gossypium hirsutum HOM05D005765 ORTHO05D002313 3.1e-40 169.1 200 53.5
Migut.F00059 Erythranthe guttata HOM05D005765 ORTHO05D002313 1.5e-39 166.8 188 54.8
Thecc.04G037800 Theobroma cacao HOM05D005765 ORTHO05D002313 1.5e-39 166.8 202 54.5
Duzib187G1674 Durio zibethinus HOM05D005765 ORTHO05D002313 3.4e-39 165.6 194 55.2
THA.LOC104825626 Tarenaya hassleriana HOM05D005765 ORTHO05D002313 3.4e-39 165.6 199 55.3
Nitab4.5_0000559g0370 Nicotiana tabacum HOM05D005765 ORTHO05D002313 4.4e-39 165.2 189 56.1
Nitab4.5_0005161g0040 Nicotiana tabacum HOM05D005765 ORTHO05D002313 4.4e-39 165.2 189 56.1
Glyma.11G151300 Glycine max HOM05D005765 ORTHO05D002313 9.9e-39 164.1 189 57.1
GSVIVG01033086001 Vitis vinifera HOM05D005765 ORTHO05D002313 9.9e-39 164.1 187 56.7
PGR142G2888 Punica granatum HOM05D005765 ORTHO05D002313 1.7e-38 163.3 193 54.9
Cc07_g00870 Coffea canephora HOM05D005765 ORTHO05D002313 2.2e-38 162.9 194 54.1
Nn3g16448 Nelumbo nucifera HOM05D005765 ORTHO05D002313 2.2e-38 162.9 191 53.4
VMungo1080G1067 Vigna mungo HOM05D005765 ORTHO05D002313 2.2e-38 162.9 195 56.9
PSO478G4423 Papaver somniferum HOM05D005765 ORTHO05D002313 2.9e-38 162.5 194 54.1
CDE05G3217 Ceratophyllum demersum HOM05D005765 ORTHO05D002313 4.9e-38 161.8 187 55.6
Atru.chr6.2579 Acer truncatum HOM05D005765 ORTHO05D002313 6.4e-38 161.4 190 52.1
Aa31LG9G720 Aethionema arabicum HOM05D005765 ORTHO05D002313 6.4e-38 161.4 201 55.2
AT5G40950 Arabidopsis thaliana HOM05D005765 ORTHO05D002313 8.3e-38 161.0 201 53.2
CARHR213430 Cardamine hirsuta HOM05D005765 ORTHO05D002313 8.3e-38 161.0 198 53.5
CDE05G1062 Ceratophyllum demersum HOM05D005765 ORTHO05D002313 8.3e-38 161.0 188 55.3
Hma1.2p1_1057F.1_g252820 Hydrangea macrophylla HOM05D005765 ORTHO05D002313 1.4e-37 160.2 222 47.7
SGA_v2.0_scaffold44G16916 Striga asiatica HOM05D005765 ORTHO05D002313 1.9e-37 159.8 193 53.4
AL7G48600 Arabidopsis lyrata HOM05D005765 ORTHO05D002313 3.2e-37 159.1 201 52.7
BcaC02g08988 Brassica carinata HOM05D005765 ORTHO05D002313 3.2e-37 159.1 201 54.2
ECA238G0681 Erigeron canadensis HOM05D005765 ORTHO05D002313 3.2e-37 159.1 199 51.8
Eucgr.I01643 Eucalyptus grandis HOM05D005765 ORTHO05D002313 3.2e-37 159.1 191 52.4
Aqoxy3G01560 Aquilegia oxysepala HOM05D005765 ORTHO05D002313 4.1e-37 158.7 192 53.1
A04p14010 Brassica napus HOM05D005765 ORTHO05D002313 4.1e-37 158.7 201 53.7
C04p48040 Brassica napus HOM05D005765 ORTHO05D002313 4.1e-37 158.7 201 54.2
BolC4t26396H Brassica oleracea HOM05D005765 ORTHO05D002313 4.1e-37 158.7 201 54.2
BraA04t17063Z Brassica rapa HOM05D005765 ORTHO05D002313 4.1e-37 158.7 201 53.7
BcaB06g27577 Brassica carinata HOM05D005765 ORTHO05D002313 1.2e-36 157.1 197 54.8
DCAR_015103 Daucus carota HOM05D005765 ORTHO05D002313 1.6e-36 156.8 186 52.2
Thhalv10027943m.g Eutrema salsugineum HOM05D005765 ORTHO05D002313 2.1e-36 156.4 201 53.2
ATR0561G222 Amborella trichopoda HOM05D005765 ORTHO05D002313 2.7e-36 156.0 197 52.8
CAN.G792.8 Capsicum annuum HOM05D005765 ORTHO05D002313 3.5e-36 155.6 190 54.2
Sp7g00970 Schrenkiella parvula HOM05D005765 ORTHO05D002313 3.5e-36 155.6 201 53.2
MBI11_g24616_MAGBIO Magnolia biondii HOM05D005765 ORTHO05D002313 1.0e-35 154.1 190 52.6
Phvul.005G031700 Phaseolus vulgaris HOM05D005765 ORTHO05D002313 1.0e-35 154.1 195 54.9
Lalb_Chr18g0046701 Lupinus albus HOM05D005765 ORTHO05D002313 1.3e-35 153.7 196 54.6
TWI34G0325 Tripterygium wilfordii HOM05D005765 ORTHO05D002313 2.3e-35 152.9 190 53.2
Peaxi162Scf00700g00029 Petunia axillaris HOM05D005765 ORTHO05D002313 5.1e-35 151.8 186 53.8
TWI34G1681 Tripterygium wilfordii HOM05D005765 ORTHO05D002313 5.1e-35 151.8 190 52.6
arahy.Tifrunner.gnm1.ann1.JYGZ5B Arachis hypogaea HOM05D005765 ORTHO05D002313 8.6e-35 151.0 185 53.5
arahy.Tifrunner.gnm1.ann1.ZMYY1J Arachis hypogaea HOM05D005765 ORTHO05D002313 8.6e-35 151.0 185 53.5
PSO017G0717 Papaver somniferum HOM05D005765 ORTHO05D002313 8.6e-35 151.0 194 51.0
unitig_0.g1924 Utricularia gibba HOM05D005765 ORTHO05D002313 1.1e-34 150.6 179 52.0
Prupe.3G225500 Prunus persica HOM05D005765 ORTHO05D002313 9.5e-34 147.5 102 82.4
Carub.0007s3455 Capsella rubella HOM05D005765 ORTHO05D002313 1.2e-33 147.1 201 50.2
Lj3g0012175 Lotus japonicus HOM05D005765 ORTHO05D002313 2.8e-33 146.0 195 51.3
arahy.Tifrunner.gnm1.ann1.C2TYHM Arachis hypogaea HOM05D005765 ORTHO05D002313 3.6e-33 145.6 185 52.4
Haze_14881 Corylus avellana HOM05D005765 ORTHO05D002313 3.6e-33 145.6 279 41.9
PGSC0003DMG400019631 Solanum tuberosum HOM05D005765 ORTHO05D002313 4.7e-33 145.2 187 52.4
Solyc11g068820.3 Solanum lycopersicum HOM05D005765 ORTHO05D002313 6.2e-33 144.8 187 53.5
Sopen11g027540 Solanum pennellii HOM05D005765 ORTHO05D002313 6.2e-33 144.8 187 53.5
arahy.Tifrunner.gnm1.ann1.9892BY Arachis hypogaea HOM05D005765 ORTHO05D002313 1.8e-32 143.3 185 52.4
Sabra16G0210900 Salix brachista HOM05D005765 ORTHO05D002313 4.0e-32 142.1 280 40.0
Psat5g215240 Pisum sativum HOM05D005765 ORTHO05D002313 6.4e-30 134.8 191 48.7
Medtr3g020680 Medicago truncatula HOM05D005765 ORTHO05D002313 7.1e-29 131.3 191 48.7
Ca_14305_v3 Cicer arietinum L. HOM05D005765 ORTHO05D002313 1.6e-28 130.2 193 48.7
Lalb_Chr04g0259971 Lupinus albus HOM05D005765 ORTHO05D002313 2.7e-28 129.4 164 52.4
SEGI_37399 Sequoiadendron giganteum HOM05D005765 ORTHO05D002313 1.3e-27 127.1 194 46.4
HPP92_025265 Vanilla planifolia HOM05D005765 ORTHO05D002313 7.3e-26 121.3 132 54.5
MELO3C008191.2 Cucumis melo HOM05D005765 ORTHO05D002313 9.6e-26 120.9 100 68.0
Rhsim08G0042600 Rhododendron simsii HOM05D005765 ORTHO05D002313 2.8e-25 119.4 273 35.5
Sc03g0006510 Simmondsia chinensis HOM05D005765 ORTHO05D002313 6.2e-25 118.2 105 64.8
AUR62003522 Chenopodium quinoa HOM05D005765 ORTHO05D002313 1.1e-24 117.5 107 64.5
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 1.4e-24 117.1 103 65.0
COL.COLO4_13264 Corchorus olitorius HOM05D005765 ORTHO05D002313 2.4e-24 116.3 105 66.7
vmacro18349 Vaccinium macrocarpon HOM05D005765 ORTHO05D002313 2.4e-24 116.3 214 42.1
HPP92_025270 Vanilla planifolia HOM05D005765 ORTHO05D002313 4.0e-24 115.5 227 39.2
Ah.03g147540 Amaranthus hybridus HOM05D005765 ORTHO05D002313 6.9e-24 114.8 107 63.6
Manes.15G161500 Manihot esculenta HOM05D005765 ORTHO05D002313 7.6e-23 111.3 102 63.7
Zm00001eb364200 Zea mays HOM05D005765 ORTHO05D002313 2.9e-22 109.4 104 61.5
CDE05G0355 Ceratophyllum demersum HOM05D005765 ORTHO05D002313 8.4e-22 107.8 157 49.7
Os01g0924000 Oryza sativa ssp. japonica HOM05D005765 ORTHO05D002313 8.4e-22 107.8 108 61.1
Hund04356 Selenicereus undatus HOM05D005765 ORTHO05D002313 5.4e-21 105.1 104 61.5
SMO334G0113 Selaginella moellendorffii HOM05D005765 ORTHO05D002313 2.1e-20 103.2 170 41.2
Pp3c21_16170 Physcomitrium patens HOM05D005765 ORTHO05D002313 7.8e-20 101.3 174 43.1
Mapoly0027s0011 Marchantia polymorpha HOM05D005765 ORTHO05D002313 1.0e-19 100.9 173 45.7
Actinidia30872 Actinidia chinensis HOM05D005765 ORTHO05D002313 7.3e-18 94.7 162 40.1
Pp3c18_9840 Physcomitrium patens HOM05D005765 ORTHO05D002313 3.6e-17 92.4 176 40.9
AagrBONN_evm.TU.Sc2ySwM_362.2457 Anthoceros agrestis HOM05D005765 ORTHO05D002313 3.1e-16 89.4 201 40.8
AagrBONN_evm.TU.Sc2ySwM_368.1099 Anthoceros agrestis HOM05D005765 ORTHO05D002313 4.0e-16 89.0 201 40.8
CBR_g59428 Chara braunii HOM05D005765 ORTHO05D002313 1.2e-15 87.4 174 39.1
TAR371G0787 Trochodendron aralioides HOM05D005765 ORTHO05D002313 3.4e-15 85.9 105 47.6
Aa31LG1G6890 Aethionema arabicum HOM05D005765 ORTHO05D002313 4.9e-14 82.0 50 78.0
EL10Ac5g10709 Beta vulgaris HOM05D005765 ORTHO05D002313 1.6e-12 77.0 62 64.5
CiPaw.03G056000 Carya illinoinensis HOM05D005765 ORTHO05D002313 1.1e-10 70.9 53 66.0
C06p19500 Brassica napus HOM05D005765 ORTHO05D002313 1.3e-09 67.4 83 50.6
HanXRQChr14g0450801 Helianthus annuus HOM05D005765 ORTHO05D002313 1.3e-09 67.4 55 69.1
BolC6t37144H Brassica oleracea HOM05D005765 ORTHO05D002313 1.6e-09 67.0 100 49.0
PRCOL_00005417 Prasinoderma coloniale HOM05D005765 ORTHO05D002313 1.6e-09 67.0 109 40.4
Cre06.g300800 Chlamydomonas reinhardtii HOM05D005765 ORTHO05D002313 6.2e-09 65.1 47 68.1
arahy.Tifrunner.gnm1.ann1.4M6ER6 Arachis hypogaea HOM05D000759 ORTHO05D000574 2.6e-07 59.7 50 58.0
arahy.Tifrunner.gnm1.ann1.6IU2DD Arachis hypogaea HOM05D000501 ORTHO05D000376 4.5e-07 58.9 37 73.0
arahy.Tifrunner.gnm1.ann1.KHI48J Arachis hypogaea HOM05D000501 ORTHO05D000376 4.5e-07 58.9 37 73.0
arahy.Tifrunner.gnm1.ann1.QYC5CC Arachis hypogaea HOM05D000501 ORTHO05D000376 4.5e-07 58.9 37 73.0
BcaB02g07920 Brassica carinata HOM05D005765 ORTHO05D002313 4.5e-07 58.9 52 63.5
MCO11G299 Micromonas commoda HOM05D005765 ORTHO05D002313 7.6e-07 58.2 58 48.3
arahy.Tifrunner.gnm1.ann1.PXW40T Arachis hypogaea HOM05D005765 ORTHO05D002313 1.3e-06 57.4 37 73.0
arahy.Tifrunner.gnm1.ann1.UE98G4 Arachis hypogaea HOM05D001334 ORTHO05D001119 2.2e-06 56.6 39 66.7
arahy.Tifrunner.gnm1.ann1.R96Y40 Arachis hypogaea HOM05D005765 ORTHO05D002313 2.9e-06 56.2 37 70.3
arahy.Tifrunner.gnm1.ann1.FH304Y Arachis hypogaea HOM05D005765 ORTHO05D002313 3.8e-06 55.8 39 66.7


User provided reference genes

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