Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 5.8e-113 411.0 220 100.0
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 2.4e-103 379.0 220 92.7
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 5.3e-90 334.7 226 84.1
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 3.1e-82 308.9 230 73.0
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 4.0e-82 308.5 230 73.0
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 5.8e-81 304.7 230 77.0
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 7.6e-81 304.3 230 72.6
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 6.7e-69 264.6 236 68.2
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 6.7e-69 264.6 231 67.5
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 5.7e-68 261.5 223 67.7
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 1.1e-66 257.3 229 67.2
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 3.1e-66 255.8 214 67.8
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 4.1e-66 255.4 235 65.1
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 5.3e-66 255.0 228 64.0
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 6.9e-66 254.6 228 65.8
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 9.0e-66 254.2 225 67.6
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.5e-65 253.4 237 65.0
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 2.0e-65 253.1 220 66.4
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 2.0e-65 253.1 228 65.4
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 2.6e-65 252.7 228 66.7
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 2.6e-65 252.7 230 62.6
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 3.4e-65 252.3 228 65.4
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.0e-64 250.8 330 49.1
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 3.8e-64 248.8 219 64.8
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 6.5e-64 248.1 235 64.3
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 7.2e-63 244.6 249 60.6
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 2.1e-62 243.0 187 72.7
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 3.6e-62 242.3 178 73.0
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 4.6e-62 241.9 193 70.5
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 4.6e-62 241.9 226 63.7
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 4.6e-62 241.9 214 65.0
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 6.1e-62 241.5 217 67.3
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 7.9e-62 241.1 220 63.2
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 1.4e-61 240.4 221 62.0
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 1.4e-61 240.4 210 65.2
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 1.8e-61 240.0 220 62.7
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 3.0e-61 239.2 156 79.5
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 5.1e-61 238.4 193 69.4
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 6.7e-61 238.0 187 69.0
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 6.7e-61 238.0 156 77.6
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 6.7e-61 238.0 156 77.6
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 6.7e-61 238.0 217 61.3
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 6.7e-61 238.0 220 61.8
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 6.7e-61 238.0 220 61.8
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 6.7e-61 238.0 156 77.6
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 6.7e-61 238.0 227 61.2
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 8.8e-61 237.7 220 61.8
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 8.8e-61 237.7 222 63.1
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 1.1e-60 237.3 231 64.9
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 1.1e-60 237.3 249 59.4
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.1e-60 237.3 225 63.1
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 1.5e-60 236.9 220 60.9
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 1.5e-60 236.9 234 61.1
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 1.5e-60 236.9 238 61.3
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 2.0e-60 236.5 220 60.9
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 2.0e-60 236.5 208 66.8
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 2.0e-60 236.5 238 60.5
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 2.6e-60 236.1 225 62.7
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 2.6e-60 236.1 210 65.2
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 3.3e-60 235.7 243 58.4
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 4.4e-60 235.3 240 58.8
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 4.4e-60 235.3 225 61.3
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 4.4e-60 235.3 222 62.2
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 5.7e-60 235.0 243 59.3
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 5.7e-60 235.0 217 62.7
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 5.7e-60 235.0 218 62.4
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 7.4e-60 234.6 197 65.0
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 7.4e-60 234.6 194 65.5
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 7.4e-60 234.6 238 60.5
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.3e-59 233.8 195 67.7
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 1.7e-59 233.4 184 70.1
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 1.7e-59 233.4 209 62.7
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 2.2e-59 233.0 178 69.7
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 2.8e-59 232.6 228 60.1
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 4.8e-59 231.9 211 64.0
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 1.1e-58 230.7 211 60.2
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 2.4e-58 229.6 223 61.0
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 1.5e-57 226.9 228 61.0
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 2.6e-57 226.1 177 71.8
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 4.5e-57 225.3 198 64.6
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 4.5e-57 225.3 211 58.8
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 5.9e-57 224.9 218 60.1
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 1.0e-56 224.2 211 61.1
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 1.0e-56 224.2 177 71.8
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 3.8e-56 222.2 180 66.7
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 3.8e-56 222.2 180 66.7
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 1.4e-55 220.3 218 59.6
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 1.9e-55 219.9 195 64.6
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 1.6e-54 216.9 225 60.9
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 3.6e-54 215.7 243 54.3
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 6.1e-54 214.9 191 61.8
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 6.1e-54 214.9 201 60.7
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 8.8e-53 211.1 224 59.4
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 7.4e-52 208.0 207 61.4
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 1.3e-51 207.2 237 55.3
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 1.7e-51 206.8 215 54.9
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 4.8e-51 205.3 194 58.8
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 6.3e-51 204.9 213 56.8
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 2.0e-49 199.9 132 75.0
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 3.8e-48 195.7 228 55.3
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 2.5e-47 193.0 158 63.9
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 3.2e-47 192.6 176 63.1
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 3.6e-46 189.1 191 55.5
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 6.1e-46 188.3 127 73.2
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 1.4e-45 187.2 217 57.6
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 1.4e-45 187.2 207 56.0
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 1.4e-45 187.2 137 70.8
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 1.8e-45 186.8 117 82.1
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 4.0e-45 185.7 182 61.5
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 5.7e-44 181.8 159 62.3
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 1.7e-43 180.3 153 61.4
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 3.7e-43 179.1 157 58.6
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 1.2e-41 174.1 152 64.5
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 1.3e-40 170.6 172 55.8
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 2.5e-39 166.4 216 49.5
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 2.7e-38 162.9 141 66.7
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 8.0e-38 161.4 152 61.8
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 2.3e-37 159.8 174 51.7
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 2.6e-36 156.4 172 50.0
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 9.8e-36 154.5 209 48.8
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 5.7e-28 128.6 80 75.0
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 4.9e-27 125.6 110 61.8
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 2.0e-25 120.2 165 52.7
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 5.0e-24 115.5 215 42.3
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 1.5e-20 104.0 97 62.9
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 1.8e-18 97.1 212 35.4
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 9.5e-15 84.7 106 50.0
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 1.2e-14 84.3 83 59.0
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 4.0e-13 79.3 228 32.9
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 5.6e-07 58.9 52 75.0
C07p55210 Brassica napus HOM05D005878 ORTHO05D033170 2.1e-06 57.0 116 44.8
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 2.1e-06 57.0 70 52.9


User provided reference genes

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