Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 2.7e-139 498.8 278 100.0
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 3.2e-92 342.4 301 72.1
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 4.2e-84 315.5 301 68.4
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 1.2e-83 313.9 302 64.2
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.5e-81 306.2 308 64.3
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 8.2e-80 301.2 303 64.7
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 9.0e-79 297.7 290 64.1
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 7.6e-78 294.7 301 65.8
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 1.7e-77 293.5 298 67.4
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 5.5e-76 288.5 302 65.9
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 2.7e-75 286.2 293 64.2
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 4.6e-75 285.4 276 68.1
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 6.0e-75 285.0 296 64.5
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.9e-74 282.3 280 66.8
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 6.7e-74 281.6 292 65.8
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 6.7e-74 281.6 298 64.1
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 6.7e-74 281.6 300 63.7
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 8.7e-74 281.2 282 64.9
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.1e-73 280.8 302 62.3
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.5e-73 279.6 282 68.4
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 3.3e-73 279.3 321 60.1
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 7.4e-73 278.1 296 66.2
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 7.4e-73 278.1 318 61.0
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 9.7e-73 277.7 331 58.3
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.7e-72 275.8 331 58.3
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.4e-71 273.9 327 57.5
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 6.9e-71 271.6 311 60.5
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 6.9e-71 271.6 280 63.2
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.2e-70 270.8 287 61.7
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 2.0e-70 270.0 319 58.6
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 2.6e-70 269.6 286 60.5
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 3.4e-70 269.2 288 59.7
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 5.9e-70 268.5 307 60.9
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 5.9e-70 268.5 293 64.5
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 7.7e-70 268.1 309 57.6
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.7e-69 266.9 283 63.3
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.7e-69 266.9 285 66.7
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 1.7e-69 266.9 308 57.8
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 3.8e-69 265.8 284 63.0
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 8.5e-69 264.6 288 63.2
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 8.5e-69 264.6 288 63.2
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 1.1e-68 264.2 297 59.9
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.1e-68 264.2 279 60.6
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.9e-68 263.5 293 64.8
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.9e-68 263.5 288 60.1
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.5e-68 263.1 279 60.6
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 2.5e-68 263.1 285 68.1
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 3.2e-68 262.7 281 61.9
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 4.2e-68 262.3 299 61.2
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 5.5e-68 261.9 279 59.5
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.2e-67 260.8 300 62.0
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.6e-67 260.4 286 61.2
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.6e-67 260.4 286 61.2
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 2.1e-67 260.0 296 59.5
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 2.1e-67 260.0 306 61.8
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 2.1e-67 260.0 287 61.0
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 6.1e-67 258.5 294 57.1
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 6.1e-67 258.5 290 60.7
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 6.1e-67 258.5 288 65.6
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 6.1e-67 258.5 291 62.5
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 7.9e-67 258.1 286 59.1
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.4e-66 257.3 297 61.3
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 1.4e-66 257.3 283 61.1
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 1.8e-66 256.9 291 61.2
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 3.9e-66 255.8 298 63.4
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 6.7e-66 255.0 286 65.4
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 2.0e-65 253.4 320 60.3
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 2.5e-65 253.1 298 63.1
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 3.3e-65 252.7 300 57.7
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 5.7e-65 251.9 284 62.7
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 5.7e-65 251.9 298 58.1
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 1.3e-64 250.8 284 62.7
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 2.8e-64 249.6 289 59.2
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 3.7e-64 249.2 302 53.0
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 4.8e-64 248.8 281 61.9
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.4e-63 247.3 288 59.0
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 2.4e-63 246.5 310 59.4
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 2.4e-63 246.5 288 60.1
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 4.1e-63 245.7 299 61.2
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 9.1e-63 244.6 307 59.6
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 1.2e-62 244.2 276 55.8
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.2e-62 244.2 294 60.5
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 1.5e-62 243.8 285 57.5
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 2.6e-62 243.0 284 60.2
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 2.6e-62 243.0 294 61.2
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 2.6e-62 243.0 285 63.5
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.6e-62 243.0 278 62.9
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 3.4e-62 242.7 285 64.2
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 3.4e-62 242.7 285 64.2
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 4.5e-62 242.3 289 55.0
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 5.9e-62 241.9 309 58.6
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.3e-61 240.7 294 59.5
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 2.2e-61 240.0 296 55.1
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 3.8e-61 239.2 310 55.8
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 6.5e-61 238.4 308 56.8
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 6.5e-61 238.4 310 55.8
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 1.1e-60 237.7 301 59.8
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 1.4e-60 237.3 283 63.3
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.2e-59 234.2 309 53.7
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 1.2e-59 234.2 312 57.1
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 1.6e-59 233.8 285 61.1
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 2.1e-59 233.4 303 55.8
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 2.7e-59 233.0 275 61.1
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 3.6e-59 232.6 303 60.4
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 3.0e-58 229.6 289 54.3
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 6.7e-58 228.4 302 57.3
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 8.8e-58 228.0 310 58.4
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.1e-57 227.6 314 52.2
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 1.5e-57 227.3 346 53.5
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 2.0e-57 226.9 317 55.5
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 2.0e-57 226.9 299 57.9
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 3.3e-57 226.1 311 57.2
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 1.3e-56 224.2 306 55.6
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 2.2e-56 223.4 300 57.0
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 8.2e-56 221.5 281 51.6
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 1.8e-55 220.3 273 59.0
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 4.1e-55 219.2 248 61.7
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 5.3e-55 218.8 415 42.2
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 9.1e-55 218.0 308 56.2
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 9.1e-55 218.0 298 54.7
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 9.1e-55 218.0 279 61.3
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.2e-54 217.6 289 52.9
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 1.7e-53 213.8 323 50.8
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 3.8e-53 212.6 300 57.3
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.4e-52 210.7 294 53.4
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 7.2e-52 208.4 297 54.5
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 1.2e-51 207.6 305 56.4
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 4.7e-51 205.7 279 57.7
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 8.0e-51 204.9 297 55.9
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 3.9e-50 202.6 281 57.7
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 8.8e-50 201.4 289 51.9
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 5.7e-49 198.7 277 52.3
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.7e-48 197.2 264 60.2
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 2.2e-48 196.8 293 50.5
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 3.7e-48 196.1 272 56.2
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 4.8e-48 195.7 279 55.9
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 2.4e-47 193.4 216 60.6
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 2.6e-46 189.9 278 54.0
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 2.7e-43 179.9 238 63.0
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 3.0e-42 176.4 195 64.6
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.2e-42 175.6 314 47.8
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.6e-41 173.3 310 43.5
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 7.5e-41 171.8 129 67.4
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 9.7e-41 171.4 219 62.6
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 3.7e-40 169.5 200 65.0
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.7e-38 163.3 209 59.8
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.9e-37 159.8 251 50.6
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 2.5e-36 156.8 278 46.8
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 1.2e-35 154.5 133 62.4
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 1.2e-33 147.9 236 51.7
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 3.1e-31 139.8 191 55.5
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-28 131.3 97 72.2
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 8.0e-27 125.2 305 37.4
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 1.2e-25 121.3 318 42.8
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 2.6e-25 120.2 94 68.1
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.3e-24 115.5 189 53.4
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 8.3e-24 115.2 80 76.2
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.4e-23 114.4 78 74.4
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 2.4e-23 113.6 88 70.5
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 4.1e-23 112.8 324 40.1
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 1.2e-22 111.3 78 73.1
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 1.6e-22 110.9 315 39.4
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 1.6e-22 110.9 100 60.0
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 2.0e-22 110.5 116 61.2
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.0e-21 108.2 322 41.9
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 6.6e-21 105.5 214 44.4
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 8.0e-19 98.6 201 44.3
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.7e-16 90.9 72 66.7
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.2e-16 90.5 174 50.6
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.9e-16 90.1 65 69.2
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.9e-15 87.4 110 55.5
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 7.0e-15 85.5 65 63.1
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.2e-15 85.1 103 51.5
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 1.2e-14 84.7 94 55.3
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.0e-14 82.4 57 71.9
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.7e-13 80.9 107 45.8
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 1.8e-10 70.9 285 38.9
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.5e-09 67.8 64 51.6
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.5e-09 67.8 123 43.1
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 7.5e-09 65.5 77 55.8
SEGI_24544 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.7e-08 64.3 128 41.4
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 7.1e-07 58.9 69 47.8
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 7.8e-06 55.5 104 41.3


User provided reference genes

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