Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1122200 Malus domestica HOM05D000424 ORTHO05D000355 5.2e-28 127.5 90 100.0
MD17G1148500 Malus domestica HOM05D000424 ORTHO05D000355 1.1e-17 93.2 45 88.9
Prupe.3G082300 Prunus persica HOM05D000424 ORTHO05D000355 2.4e-17 92.0 44 90.9
MD14G1061800 Malus domestica HOM05D000424 ORTHO05D000355 1.2e-16 89.7 45 86.7
MD17G1208000 Malus domestica HOM05D000424 ORTHO05D000355 7.8e-16 87.0 42 88.1
FvH4_6g30140 Fragaria vesca HOM05D000424 ORTHO05D000355 1.0e-15 86.7 45 84.4
FAN05G2894 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.0e-15 86.7 45 84.4
FAN14G3653 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.0e-15 86.7 45 84.4
RcHm_v2.0_Chr2g0136351 Rosa chinensis HOM05D000424 ORTHO05D000355 1.7e-15 85.9 45 84.4
FAN09G2660 Fragaria x ananassa HOM05D000424 ORTHO05D000355 2.3e-15 85.5 45 82.2
FAN02G2145 Fragaria x ananassa HOM05D000424 ORTHO05D000355 3.0e-15 85.1 45 82.2
RcHm_v2.0_Chr2g0136301 Rosa chinensis HOM05D000424 ORTHO05D000355 5.1e-15 84.3 45 84.4
Lj7P456T17 Lonicera japonica HOM05D000424 ORTHO05D000355 1.4e-12 76.3 45 71.1
Sed0025731 Sechium edule HOM05D000424 ORTHO05D000355 6.9e-12 73.9 43 74.4
CiPaw.02G155400 Carya illinoinensis HOM05D000424 ORTHO05D000355 1.2e-11 73.2 45 73.3
CsaV3_4G001470 Cucumis sativus L. HOM05D000424 ORTHO05D000355 1.5e-11 72.8 43 72.1
MSTRG.22731 Avicennia marina HOM05D000424 ORTHO05D000355 2.0e-11 72.4 45 68.9
TWI75G1540 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 2.0e-11 72.4 45 64.4
GSVIVG01017293001 Vitis vinifera HOM05D000424 ORTHO05D000355 2.0e-11 72.4 42 73.8
TWI75G0869 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 3.4e-11 71.6 45 64.4
Cpa.g.sc97.75 Carica papaya HOM05D000424 ORTHO05D000355 4.4e-11 71.2 42 73.8
Gohir.D11G013700 Gossypium hirsutum HOM05D000424 ORTHO05D000355 4.4e-11 71.2 45 66.7
Sopen03g035440 Solanum pennellii HOM05D000424 ORTHO05D000355 5.8e-11 70.9 45 64.4
Gohir.A11G013500 Gossypium hirsutum HOM05D000424 ORTHO05D000355 7.6e-11 70.5 43 67.4
Rhsim10G0161900 Rhododendron simsii HOM05D003561 ORTHO05D000355 7.6e-11 70.5 45 66.7
CSS0004844 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 9.9e-11 70.1 42 69.0
CSS0038368 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 9.9e-11 70.1 42 69.0
ClCG07G012730 Citrullus lanatus HOM05D000424 ORTHO05D000355 9.9e-11 70.1 40 75.0
Potri.004G102700 Populus trichocarpa HOM05D000424 ORTHO05D000355 1.7e-10 69.3 45 66.7
Sc25g0002680 Simmondsia chinensis HOM05D000424 ORTHO05D000355 2.2e-10 68.9 43 67.4
Rhsim08G0215100 Rhododendron simsii HOM05D000424 ORTHO05D000355 2.9e-10 68.6 45 62.2
Haze_16529 Corylus avellana HOM05D000424 ORTHO05D000355 3.8e-10 68.2 45 71.1
Hma1.2p1_0169F.1_g074750 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 3.8e-10 68.2 45 64.4
PSO017G2364 Papaver somniferum HOM05D000424 ORTHO05D000355 3.8e-10 68.2 44 59.1
Duzib235G0794 Durio zibethinus HOM05D000424 ORTHO05D000355 4.9e-10 67.8 43 65.1
Eucgr.J03056 Eucalyptus grandis HOM05D000424 ORTHO05D000355 6.4e-10 67.4 42 64.3
Sabra04G0077900 Salix brachista HOM05D000424 ORTHO05D000355 6.4e-10 67.4 43 67.4
SalBow2G0868 Salvia bowleyana HOM05D000424 ORTHO05D000355 6.4e-10 67.4 44 63.6
Glyma.11G011600 Glycine max HOM05D000424 ORTHO05D000355 1.4e-09 66.2 43 65.1
Actinidia15786 Actinidia chinensis HOM05D000424 ORTHO05D000355 1.9e-09 65.9 45 62.2
Rhsim05G0089000 Rhododendron simsii HOM05D003561 ORTHO05D000355 1.9e-09 65.9 45 62.2
SHI11360 Sapria himalayana HOM05D000424 ORTHO05D000355 1.9e-09 65.9 45 60.0
Cfa001986 Carpinus fangiana HOM05D000424 ORTHO05D000355 2.4e-09 65.5 42 71.4
PGR031G1137 Punica granatum HOM05D000424 ORTHO05D000355 2.4e-09 65.5 45 60.0
Lsat_1_v5_gn_8_31921 Lactuca sativa HOM05D000424 ORTHO05D000355 3.2e-09 65.1 43 65.1
Lj5g0003792 Lotus japonicus HOM05D000424 ORTHO05D000355 3.2e-09 65.1 43 62.8
PSO170G0141 Papaver somniferum HOM05D000424 ORTHO05D000355 3.2e-09 65.1 44 56.8
Solyc03g116540.1 Solanum lycopersicum HOM05D000424 ORTHO05D000355 4.2e-09 64.7 41 63.4
PGSC0003DMG400000611 Solanum tuberosum HOM05D000424 ORTHO05D000355 4.2e-09 64.7 41 63.4
ECA232G0531 Erigeron canadensis HOM05D000424 ORTHO05D000355 7.1e-09 63.9 45 62.2
Aqoxy7G02204 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 9.3e-09 63.5 44 56.8
Thecc.06G069800 Theobroma cacao HOM05D000424 ORTHO05D000355 9.3e-09 63.5 41 63.4
MBI18_g43126_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 1.2e-08 63.2 45 57.8
Nitab4.5_0010254g0070 Nicotiana tabacum HOM05D000076 ORTHO05D006651 1.2e-08 63.2 41 61.0
Oeu033472.1 Olea europaea HOM05D000424 ORTHO05D000355 1.6e-08 62.8 45 55.6
TPR.G23436 Trifolium pratense HOM05D000424 ORTHO05D000355 1.6e-08 62.8 43 62.8
CAN.G407.100 Capsicum annuum HOM05D000424 ORTHO05D000355 2.1e-08 62.4 45 60.0
HanXRQChr09g0274971 Helianthus annuus HOM05D000424 ORTHO05D000355 2.1e-08 62.4 42 64.3
MBI04_g29350_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 2.1e-08 62.4 45 57.8
MBI04_g47847_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 2.1e-08 62.4 45 57.8
VMungo0720G2162 Vigna mungo HOM05D000424 ORTHO05D000355 2.1e-08 62.4 43 62.8
Manes.10G054800 Manihot esculenta HOM05D000424 ORTHO05D000355 2.7e-08 62.0 45 60.0
Glyma.01G228800 Glycine max HOM05D000424 ORTHO05D000355 3.5e-08 61.6 43 60.5
Sc10g0005790 Simmondsia chinensis HOM05D000424 ORTHO05D000355 4.6e-08 61.2 40 65.0
AUR62011540 Chenopodium quinoa HOM05D000424 ORTHO05D000355 7.8e-08 60.5 34 67.6
Ca_17357_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 7.8e-08 60.5 43 58.1
Ca_29615_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 7.8e-08 60.5 43 58.1
Lalb_Chr09g0320271 Lupinus albus HOM05D000424 ORTHO05D000355 7.8e-08 60.5 43 60.5
Medtr8g102710 Medicago truncatula HOM05D000424 ORTHO05D000355 7.8e-08 60.5 42 61.9
SGA_v2.0_scaffold5G02672 Striga asiatica HOM05D000424 ORTHO05D000355 7.8e-08 60.5 43 62.8
Cc04_g05460 Coffea canephora HOM05D000424 ORTHO05D000355 1.3e-07 59.7 42 59.5
Lj1g0022051 Lotus japonicus HOM05D000424 ORTHO05D000355 1.3e-07 59.7 43 58.1
Ciclev10026987m.g Citrus clementina HOM05D000424 ORTHO05D000355 2.3e-07 58.9 41 61.0
TAR383G0964 Trochodendron aralioides HOM05D000424 ORTHO05D000355 2.3e-07 58.9 41 61.0
Psat7g016200 Pisum sativum HOM05D000424 ORTHO05D000355 1.1e-06 56.6 40 57.5
Nitab4.5_0001764g0050 Nicotiana tabacum HOM05D000424 ORTHO05D000355 1.9e-06 55.8 40 55.0
Phvul.007G177800 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 3.3e-06 55.1 39 56.4
QL05p028340 Quercus lobata HOM05D000424 ORTHO05D000355 3.3e-06 55.1 31 77.4
Sp1g39190 Schrenkiella parvula HOM05D000424 ORTHO05D000355 5.6e-06 54.3 45 51.1
MBI04_g24603_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 7.3e-06 53.9 41 56.1


User provided reference genes

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