Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1121700 Malus domestica HOM05D001750 ORTHO05D001825 3.4e-16 87.4 51 100.0
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 4.6e-13 77.0 50 88.0
Hma1.2p1_0066F.1_g036370 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 7.8e-13 76.3 47 91.5
Hma1.2p1_0472F.1_g159730 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 7.8e-13 76.3 47 91.5
RcHm_v2.0_CPg0502851 Rosa chinensis HOM05D001750 ORTHO05D001825 7.8e-13 76.3 50 88.0
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.3e-12 75.5 47 89.4
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.3e-12 75.5 47 89.4
Gohir.A04G039180 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.3e-12 75.5 47 89.4
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.3e-12 75.5 47 89.4
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.3e-12 75.5 47 89.4
Gohir.A07G167090 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.7e-12 75.1 47 89.4
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 2.3e-12 74.7 47 87.2
unitig_736.g22737 Utricularia gibba HOM05D001750 ORTHO05D001825 3.0e-12 74.3 50 84.0
unitig_91.g26524 Utricularia gibba HOM05D001750 ORTHO05D001825 3.0e-12 74.3 50 84.0
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 3.9e-12 73.9 47 85.1
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 3.9e-12 73.9 47 87.2
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 3.9e-12 73.9 47 87.2
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 3.9e-12 73.9 47 87.2
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 5.1e-12 73.6 47 87.2
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 5.1e-12 73.6 47 85.1
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.6e-12 73.2 49 83.7
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 1.5e-11 72.0 51 84.3
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 1.5e-11 72.0 51 84.3
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 3.3e-11 70.9 50 80.0
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 3.3e-11 70.9 50 80.0
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 3.3e-11 70.9 50 80.0
HanXRQChr11g0323711 Helianthus annuus HOM05D001750 ORTHO05D001825 3.3e-11 70.9 50 80.0
HanXRQChr17g0557801 Helianthus annuus HOM05D001750 ORTHO05D001825 3.3e-11 70.9 50 80.0
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 3.3e-11 70.9 50 80.0
SalBow1G5472 Salvia bowleyana HOM05D001750 ORTHO05D001825 3.3e-11 70.9 49 81.6
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 5.6e-11 70.1 51 80.4
Medtr4g006150 Medicago truncatula HOM05D001750 ORTHO05D001825 7.3e-11 69.7 47 85.1
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 7.3e-11 69.7 47 85.1
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 7.3e-11 69.7 47 85.1
Oeu010691.1 Olea europaea HOM05D001750 ORTHO05D001825 7.3e-11 69.7 47 80.9
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 7.3e-11 69.7 47 85.1
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 1.3e-10 68.9 47 83.0
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 1.3e-10 68.9 47 83.0
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 1.3e-10 68.9 47 83.0
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 1.3e-10 68.9 47 83.0
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 1.3e-10 68.9 47 83.0
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 1.3e-10 68.9 45 82.2
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 1.6e-10 68.6 50 82.0
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 1.6e-10 68.6 50 82.0
arahy.Tifrunner.gnm1.ann1.GEK8SS Arachis hypogaea HOM05D001750 ORTHO05D001825 1.6e-10 68.6 50 82.0
Gorai.005G127100 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.6e-10 68.6 46 80.4
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 1.6e-10 68.6 47 83.0
AL7G50360 Arabidopsis lyrata HOM05D001750 ORTHO05D001825 2.1e-10 68.2 47 83.0
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 2.1e-10 68.2 47 83.0
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 2.1e-10 68.2 47 83.0
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 2.1e-10 68.2 47 83.0
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 2.1e-10 68.2 47 83.0
BolSC46t60963H Brassica oleracea HOM05D001750 ORTHO05D001825 2.1e-10 68.2 47 83.0
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 2.1e-10 68.2 47 83.0
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 2.1e-10 68.2 47 83.0
BraSC138t45539Z Brassica rapa HOM05D001750 ORTHO05D001825 2.1e-10 68.2 47 83.0
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 2.1e-10 68.2 47 83.0
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 2.1e-10 68.2 47 83.0
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 2.1e-10 68.2 47 83.0
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 2.8e-10 67.8 50 78.0
Psat0s6638g0080 Pisum sativum HOM05D001750 ORTHO05D001825 2.8e-10 67.8 47 85.1
Psat0s8829g0080 Pisum sativum HOM05D001750 ORTHO05D001825 2.8e-10 67.8 47 85.1
Psat0ss8367g0120 Pisum sativum HOM05D001750 ORTHO05D001825 2.8e-10 67.8 47 85.1
Psat4g065280 Pisum sativum HOM05D001750 ORTHO05D001825 2.8e-10 67.8 47 85.1
TPR.G28398 Trifolium pratense HOM05D001750 ORTHO05D001825 2.8e-10 67.8 47 85.1
Gohir.D02G112150 Gossypium hirsutum HOM05D001750 ORTHO05D001825 8.1e-10 66.2 49 77.6
Gorai.006G066100 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.4e-09 65.5 49 79.6
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 1.4e-09 65.5 47 80.9
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 1.4e-09 65.5 47 80.9
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 3.1e-09 64.3 47 83.0
Medtr0002s0200 Medicago truncatula HOM05D001750 ORTHO05D001825 4.0e-09 63.9 50 72.0
Gohir.D06G183633 Gossypium hirsutum HOM05D001750 ORTHO05D001825 9.0e-09 62.8 49 75.5
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 9.0e-09 62.8 45 77.8
SEGI_16404 Sequoiadendron giganteum HOM05D001387 ORTHO05D001250 9.0e-09 62.8 45 77.8
SEGI_32159 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 9.0e-09 62.8 45 77.8
SEGI_35420 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 9.0e-09 62.8 45 77.8
Gohir.D09G044501 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.2e-08 62.4 49 75.5
MBI14_g34533_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 2.0e-08 61.6 47 78.7
BolC6t36205H Brassica oleracea HOM05D001750 ORTHO05D001825 2.6e-08 61.2 47 74.5
BolSC35t60696H Brassica oleracea HOM05D001750 ORTHO05D001825 2.6e-08 61.2 47 76.6
SEGI_32489 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 2.6e-08 61.2 45 75.6
Nitab4.5_0007400g0030 Nicotiana tabacum HOM05D001750 ORTHO05D001825 4.4e-08 60.5 44 77.3
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 7.6e-08 59.7 47 76.6
Gorai.002G182500 Gossypium raimondii HOM05D001750 ORTHO05D001825 7.6e-08 59.7 47 76.6
Solyc11g021190.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 3.8e-07 57.4 45 73.3
GSVIVG01004101001 Vitis vinifera HOM05D000011 ORTHO05D002639 3.8e-07 57.4 37 78.4
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 1.1e-06 55.8 32 90.6
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 1.4e-06 55.5 38 81.6
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 3.2e-06 54.3 32 87.5
BolSC29t60501H Brassica oleracea HOM05D001750 ORTHO05D001825 7.1e-06 53.1 30 90.0


User provided reference genes

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