Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1111100 Malus domestica HOM05D002759 ORTHO05D003290 3.3e-46 188.0 91 100.0
MD00G1111200 Malus domestica HOM05D002759 ORTHO05D003290 5.8e-35 150.6 96 82.3
MD08G1225400 Malus domestica HOM05D002759 ORTHO05D003290 7.1e-33 143.7 75 93.3
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 3.0e-31 138.3 89 75.3
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 3.4e-27 124.8 75 78.7
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.6e-19 98.6 74 62.2
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.4e-19 98.2 74 62.2
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 3.4e-19 98.2 96 51.0
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 7.6e-19 97.1 74 62.2
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 7.6e-19 97.1 74 60.8
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 1.7e-18 95.9 89 59.6
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 1.7e-18 95.9 77 59.7
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 3.2e-17 91.7 96 49.0
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.6e-16 89.4 79 53.2
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 2.7e-16 88.6 96 47.9
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 2.3e-15 85.5 75 50.7
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 6.7e-15 84.0 75 54.7
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 8.8e-15 83.6 75 54.7
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 5.7e-14 80.9 96 41.7
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 7.4e-14 80.5 75 52.0
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 7.4e-14 80.5 75 50.7
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 1.7e-13 79.3 75 48.0
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 3.7e-13 78.2 75 45.3
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 3.7e-13 78.2 75 54.7
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 6.3e-13 77.4 72 55.6
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 1.4e-12 76.3 75 45.3
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 1.8e-12 75.9 75 50.7
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 1.8e-12 75.9 75 50.7
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 1.8e-12 75.9 75 50.7
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 1.8e-12 75.9 86 41.9
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 1.8e-12 75.9 75 45.3
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 3.1e-12 75.1 75 49.3
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 5.3e-12 74.3 77 50.6
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 5.3e-12 74.3 75 45.3
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 9.1e-12 73.6 75 48.0
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 9.1e-12 73.6 75 49.3
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 1.2e-11 73.2 75 50.7
CARHR284400 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.6e-11 72.0 75 46.7
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 3.4e-11 71.6 79 43.0
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 4.5e-11 71.2 78 44.9
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 5.9e-11 70.9 75 44.0
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 5.9e-11 70.9 75 53.3
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 7.7e-11 70.5 75 48.0
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 1.0e-10 70.1 75 49.3
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 1.3e-10 69.7 78 42.3
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.7e-10 69.3 72 45.8
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.7e-10 69.3 75 49.3
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 2.2e-10 68.9 71 45.1
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 2.2e-10 68.9 75 46.7
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 2.9e-10 68.6 76 47.4
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 2.9e-10 68.6 76 44.7
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 5.0e-10 67.8 78 43.6
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 6.5e-10 67.4 75 46.7
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 6.5e-10 67.4 75 44.0
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 6.5e-10 67.4 75 45.3
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 8.5e-10 67.0 72 45.8
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 1.1e-09 66.6 74 45.9
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 1.1e-09 66.6 75 49.3
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 1.4e-09 66.2 75 46.7
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 1.4e-09 66.2 75 46.7
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 1.4e-09 66.2 75 46.7
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 1.4e-09 66.2 75 46.7
AL7G28920 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 2.5e-09 65.5 78 39.7
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 4.2e-09 64.7 71 43.7
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 4.2e-09 64.7 78 42.3
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 5.5e-09 64.3 78 42.3
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 7.2e-09 63.9 77 40.3
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 9.4e-09 63.5 75 42.7
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 1.2e-08 63.2 71 38.0
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 1.2e-08 63.2 74 43.2
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 7.9e-08 60.5 75 36.0
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 1.4e-07 59.7 75 40.0
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 1.4e-07 59.7 75 37.3
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 3.0e-07 58.5 67 40.3
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 3.0e-07 58.5 71 40.8
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 3.9e-07 58.2 62 45.2
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 5.1e-07 57.8 75 37.3
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 5.1e-07 57.8 75 38.7
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 5.1e-07 57.8 75 38.7
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 5.1e-07 57.8 75 38.7
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 5.1e-07 57.8 75 41.3
AT5G28550 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 1.1e-06 56.6 75 36.0
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 2.0e-06 55.8 74 36.5
Cpa.g.sc148.31 Carica papaya HOM05D002759 ORTHO05D003290 7.4e-06 53.9 54 44.4
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 9.7e-06 53.5 75 41.3
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 9.7e-06 53.5 75 41.3


User provided reference genes

Program Settings