Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 8.5e-85 317.0 165 100.0
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 2.1e-22 109.8 144 47.9
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 8.1e-19 97.8 144 43.8
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 2.4e-18 96.3 144 42.4
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 4.0e-18 95.5 142 40.8
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.3e-18 95.1 144 41.7
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.3e-18 95.1 144 41.7
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 5.3e-18 95.1 144 41.0
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 9.0e-18 94.4 144 41.7
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.2e-17 94.0 144 40.3
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.2e-17 94.0 139 43.9
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.0e-17 93.2 144 41.0
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.0e-17 93.2 144 41.0
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.0e-17 93.2 144 41.0
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 2.0e-17 93.2 143 39.9
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 2.0e-17 93.2 143 39.9
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.0e-17 93.2 162 38.9
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 2.0e-17 93.2 141 41.8
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 3.4e-17 92.4 144 40.3
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 4.5e-17 92.0 142 40.1
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 7.6e-17 91.3 144 39.6
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.7e-16 90.1 144 38.9
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.7e-16 90.1 140 42.1
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.9e-16 89.4 144 40.3
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.9e-16 89.4 141 40.4
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.8e-16 89.0 144 40.3
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 3.8e-16 89.0 144 38.9
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.8e-16 89.0 144 38.9
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 8.4e-16 87.8 144 38.9
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.1e-15 87.4 144 38.9
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.4e-15 87.0 143 39.9
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 1.4e-15 87.0 138 39.9
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.4e-15 87.0 138 39.9
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.4e-15 87.0 141 39.0
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 1.4e-15 87.0 141 39.0
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.9e-15 86.7 144 38.9
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.2e-15 85.9 144 40.3
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 3.2e-15 85.9 144 39.6
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.2e-15 85.9 144 38.2
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 9.3e-15 84.3 142 37.3
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 9.3e-15 84.3 162 35.8
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.7e-14 82.8 144 38.9
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 2.7e-14 82.8 144 38.9
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 4.6e-14 82.0 144 36.8
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 6.0e-14 81.6 142 35.9
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 7.9e-14 81.3 144 37.5
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.0e-13 80.9 144 38.2
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.8e-13 80.1 139 36.0
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 1.8e-13 80.1 144 34.7
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.8e-13 80.1 144 38.2
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 2.3e-13 79.7 144 36.1
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 2.3e-13 79.7 139 35.3
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 3.0e-13 79.3 144 36.8
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 3.9e-13 79.0 139 36.7
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 5.1e-13 78.6 139 37.4
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 6.7e-13 78.2 139 36.0
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 8.7e-13 77.8 165 32.7
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 1.5e-12 77.0 139 36.7
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 1.5e-12 77.0 144 35.4
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 1.9e-12 76.6 140 35.0
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.9e-12 76.6 137 34.3
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 1.9e-12 76.6 139 36.7
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.3e-12 75.9 42 78.6
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 3.3e-12 75.9 144 33.3
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 3.3e-12 75.9 144 34.0
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 3.3e-12 75.9 138 36.2
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 4.3e-12 75.5 139 35.3
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 4.3e-12 75.5 140 35.7
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 4.3e-12 75.5 139 35.3
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 4.3e-12 75.5 139 35.3
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 7.4e-12 74.7 139 35.3
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 7.4e-12 74.7 140 35.0
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 9.6e-12 74.3 139 35.3
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 1.3e-11 73.9 137 35.0
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.6e-11 73.6 62 59.7
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.6e-11 73.6 141 35.5
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 2.1e-11 73.2 139 34.5
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 2.8e-11 72.8 139 34.5
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 3.7e-11 72.4 139 33.1
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 4.8e-11 72.0 140 35.0
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 4.8e-11 72.0 140 36.4
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 4.8e-11 72.0 144 32.6
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 6.2e-11 71.6 144 34.0
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 8.1e-11 71.2 42 73.8
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 8.1e-11 71.2 42 73.8
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 8.1e-11 71.2 139 30.9
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 1.1e-10 70.9 140 34.3
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.1e-10 70.9 42 71.4
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 1.1e-10 70.9 141 36.9
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.1e-10 70.9 41 78.0
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 1.4e-10 70.5 43 67.4
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.4e-10 70.5 43 72.1
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.8e-10 70.1 137 32.8
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 1.8e-10 70.1 132 36.4
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 2.4e-10 69.7 140 33.6
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 3.1e-10 69.3 144 33.3
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 3.1e-10 69.3 140 34.3
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.1e-10 69.3 139 33.8
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 4.0e-10 68.9 139 33.8
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 6.9e-10 68.2 137 32.1
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 1.2e-09 67.4 157 34.4
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.0e-09 66.6 43 69.8
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 2.0e-09 66.6 45 68.9
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 3.4e-09 65.9 42 64.3
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 5.8e-09 65.1 43 67.4
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 5.8e-09 65.1 42 69.0
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 5.8e-09 65.1 43 67.4
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 7.6e-09 64.7 140 33.6
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.3e-08 63.9 143 33.6
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.3e-08 63.9 41 68.3
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 3.8e-08 62.4 140 31.4
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 3.8e-08 62.4 140 31.4
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 3.8e-08 62.4 140 31.4
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 3.8e-08 62.4 140 31.4
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 6.5e-08 61.6 60 50.0
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 2.7e-06 56.2 79 41.8
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 3.5e-06 55.8 45 60.0
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 6.0e-06 55.1 140 31.4
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.9e-06 54.7 28 85.7
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.9e-06 54.7 28 85.7
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.9e-06 54.7 28 85.7
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.9e-06 54.7 28 85.7


User provided reference genes

Program Settings