Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 1.1e-53 213.0 109 100.0
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 3.7e-44 181.4 105 85.7
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 1.0e-22 110.2 105 51.4
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.2e-18 96.7 105 46.7
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 2.7e-18 95.5 105 42.9
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 2.3e-17 92.4 105 44.8
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.3e-17 92.4 105 41.9
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 2.3e-17 92.4 105 41.0
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 2.9e-17 92.0 96 44.8
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 2.9e-17 92.0 104 41.3
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 2.9e-17 92.0 105 43.8
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 3.8e-17 91.7 107 42.1
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.8e-17 91.7 104 43.3
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.8e-17 91.7 105 40.0
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 5.0e-17 91.3 103 42.7
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 6.6e-17 90.9 105 41.9
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 6.6e-17 90.9 105 43.8
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 6.6e-17 90.9 103 43.7
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 8.6e-17 90.5 105 41.9
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 8.6e-17 90.5 104 42.3
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 1.1e-16 90.1 104 43.3
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.5e-16 89.7 105 41.0
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.5e-16 89.7 104 42.3
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.5e-16 89.0 105 39.0
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 4.3e-16 88.2 105 41.9
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 4.3e-16 88.2 105 38.1
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.6e-16 87.8 105 41.9
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 1.2e-15 86.7 105 40.0
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 1.2e-15 86.7 98 44.9
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.1e-15 85.9 105 40.0
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 2.8e-15 85.5 103 39.8
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 4.7e-15 84.7 103 41.7
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 6.1e-15 84.3 96 41.7
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 1.4e-14 83.2 96 43.8
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 1.8e-14 82.8 105 38.1
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 3.0e-14 82.0 102 37.3
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 8.9e-14 80.5 105 32.4
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.5e-13 79.7 105 39.0
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 2.0e-13 79.3 96 40.6
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 2.0e-13 79.3 96 42.7
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 3.4e-13 78.6 104 34.6
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 3.4e-13 78.6 95 38.9
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 5.8e-13 77.8 103 36.9
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 5.8e-13 77.8 104 31.7
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 9.8e-13 77.0 95 38.9
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 1.3e-12 76.6 105 31.4
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 1.7e-12 76.3 105 39.0
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 1.7e-12 76.3 93 43.0
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 1.7e-12 76.3 100 34.0
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 2.2e-12 75.9 105 37.1
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.2e-12 75.9 103 36.9
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 3.7e-12 75.1 96 35.4
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 3.7e-12 75.1 93 43.0
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.7e-12 75.1 106 37.7
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 1.1e-11 73.6 104 32.7
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.1e-11 73.6 105 34.3
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 1.4e-11 73.2 92 42.4
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 1.9e-11 72.8 96 37.5
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 3.2e-11 72.0 94 38.3
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 4.1e-11 71.6 101 37.6
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 4.1e-11 71.6 97 38.1
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 9.2e-11 70.5 95 36.8
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 9.2e-11 70.5 105 32.4
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.2e-10 70.1 105 34.3
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 1.2e-10 70.1 93 38.7
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 1.2e-10 70.1 95 35.8
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 2.0e-10 69.3 94 38.3
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 2.0e-10 69.3 94 38.3
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 2.7e-10 68.9 92 37.0
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 2.7e-10 68.9 90 37.8
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 2.7e-10 68.9 99 37.4
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 2.7e-10 68.9 96 34.4
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.0e-09 67.0 102 35.3
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 1.0e-09 67.0 105 35.2
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 1.0e-09 67.0 93 35.5
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.0e-09 67.0 96 35.4
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.0e-09 67.0 96 35.4
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.7e-09 66.2 105 28.6
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 2.3e-09 65.9 96 36.5
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 3.9e-09 65.1 108 35.2
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 6.6e-09 64.3 80 41.2
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 8.6e-09 63.9 96 34.4
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 8.6e-09 63.9 107 33.6
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.1e-08 63.5 96 36.5
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 1.1e-08 63.5 95 34.7
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 1.1e-08 63.5 91 35.2
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 1.5e-08 63.2 83 34.9
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.5e-08 63.2 104 27.9
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.9e-08 62.8 105 30.5
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 2.5e-08 62.4 105 27.6
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 7.3e-08 60.8 105 28.6
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 9.5e-08 60.5 105 28.6
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 9.5e-08 60.5 105 28.6
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.2e-07 60.1 105 30.5
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.2e-07 60.1 105 30.5
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 1.2e-07 60.1 105 33.3
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.6e-07 59.7 105 28.6
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 1.6e-07 59.7 105 28.6
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 1.6e-07 59.7 96 30.2
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 2.1e-07 59.3 91 31.9
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 2.8e-07 58.9 89 31.5
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 3.6e-07 58.5 105 28.6
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 6.2e-07 57.8 100 34.0
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 1.1e-06 57.0 105 26.7
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 1.8e-06 56.2 105 24.8
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 2.3e-06 55.8 101 30.7
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 8.9e-06 53.9 96 32.3


User provided reference genes

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