Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 6.0e-129 464.2 230 100.0
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 4.2e-98 361.7 230 82.2
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 7.4e-95 350.9 261 73.9
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 6.3e-94 347.8 230 78.7
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 4.2e-90 335.1 230 75.2
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 2.2e-83 312.8 230 71.7
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 2.5e-82 309.3 230 70.9
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 5.5e-82 308.1 230 70.4
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.6e-81 305.4 230 70.0
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.7e-81 305.1 230 70.0
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.4e-77 292.7 230 67.4
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.4e-77 292.7 230 66.5
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 7.7e-76 287.7 230 65.2
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 7.7e-76 287.7 230 65.7
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 2.2e-75 286.2 230 64.8
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 2.9e-75 285.8 230 63.0
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 2.5e-74 282.7 230 64.8
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 1.6e-73 280.0 230 63.0
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 2.1e-73 279.6 230 65.7
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.7e-73 279.3 230 64.3
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 4.7e-73 278.5 229 61.6
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 2.3e-72 276.2 230 64.3
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 4.0e-72 275.4 230 62.2
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 5.2e-72 275.0 230 62.6
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 5.2e-72 275.0 230 63.0
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 6.8e-72 274.6 230 62.6
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 6.8e-72 274.6 230 63.9
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 6.8e-72 274.6 230 62.6
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.2e-71 273.9 222 64.0
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 1.2e-71 273.9 230 64.8
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.2e-71 273.9 230 62.2
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 2.6e-71 272.7 230 63.5
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 4.4e-71 271.9 230 62.6
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 5.7e-71 271.6 230 62.6
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 9.8e-71 270.8 232 64.2
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.3e-70 270.4 223 63.7
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 1.3e-70 270.4 230 62.6
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.3e-70 270.4 230 63.0
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 1.7e-70 270.0 223 63.7
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 1.7e-70 270.0 230 62.6
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 6.3e-70 268.1 230 61.7
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 1.4e-69 266.9 230 62.6
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 4.1e-69 265.4 230 60.4
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 4.1e-69 265.4 230 60.0
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 9.1e-69 264.2 232 63.4
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 9.1e-69 264.2 230 61.7
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 5.9e-68 261.5 227 58.1
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 1.0e-67 260.8 221 59.7
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.3e-67 260.4 230 60.4
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 1.7e-67 260.0 221 59.3
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 1.7e-67 260.0 227 57.7
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.7e-67 260.0 227 57.7
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 2.3e-67 259.6 222 60.4
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 2.3e-67 259.6 230 59.6
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 2.3e-67 259.6 221 59.7
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 2.9e-67 259.2 227 57.3
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 2.9e-67 259.2 227 57.3
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.9e-67 259.2 230 61.3
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.9e-67 259.2 230 61.3
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 2.9e-67 259.2 221 59.3
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 3.8e-67 258.8 232 59.9
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 8.6e-67 257.7 225 59.6
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.1e-66 257.3 227 58.1
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.1e-66 257.3 230 60.0
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.1e-66 257.3 230 60.0
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 1.5e-66 256.9 230 59.6
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 1.5e-66 256.9 230 59.6
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.9e-66 256.5 230 60.0
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 2.5e-66 256.1 230 59.6
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 7.2e-66 254.6 226 60.6
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 1.2e-65 253.8 230 59.1
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.2e-65 253.8 227 59.9
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 1.6e-65 253.4 221 58.4
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 1.6e-65 253.4 230 59.6
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 1.6e-65 253.4 230 59.6
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 2.1e-65 253.1 226 61.1
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 2.1e-65 253.1 230 57.8
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 2.8e-65 252.7 221 58.4
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 4.7e-65 251.9 230 58.3
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 6.1e-65 251.5 221 57.9
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 8.0e-65 251.1 228 56.1
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.0e-64 250.8 221 57.9
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 1.4e-64 250.4 230 59.6
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 1.4e-64 250.4 230 59.6
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.3e-64 249.6 230 59.1
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 4.0e-64 248.8 230 55.2
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 6.8e-64 248.1 217 59.4
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 7.5e-63 244.6 222 55.4
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 2.8e-62 242.7 225 57.8
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.1e-61 240.7 230 57.0
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 7.0e-61 238.0 230 54.3
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 2.7e-60 236.1 240 52.1
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 1.3e-59 233.8 217 55.8
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 2.3e-59 233.0 217 55.8
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 1.1e-58 230.7 204 57.8
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.1e-58 230.7 250 53.6
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.5e-58 230.3 221 53.4
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 4.7e-57 225.3 217 53.5
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 6.8e-56 221.5 219 54.8
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.5e-55 220.3 183 61.7
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.4e-53 213.8 221 53.4
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 9.5e-50 201.1 220 51.8
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 4.7e-49 198.7 219 50.2
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 3.1e-48 196.1 186 57.0
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 5.8e-47 191.8 180 55.6
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 9.8e-47 191.0 184 55.4
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 4.9e-46 188.7 183 53.0
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 1.1e-45 187.6 187 52.4
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 5.4e-45 185.3 225 45.3
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 1.0e-43 181.0 190 49.5
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 7.5e-39 164.9 219 45.2
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 4.9e-38 162.2 101 74.3
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 1.2e-36 157.5 250 38.4
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 2.3e-35 153.3 92 73.9
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.6e-34 148.7 104 66.3
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.6e-33 147.1 104 64.4
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.6e-33 147.1 104 64.4
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 6.2e-33 145.2 150 49.3
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.1e-32 142.9 104 62.5
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 4.0e-32 142.5 104 64.4
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 6.4e-30 135.2 100 60.0
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 6.6e-27 125.2 86 65.1
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 4.3e-26 122.5 105 56.2
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 5.6e-26 122.1 94 68.1
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.1e-24 117.9 127 52.0
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 1.5e-23 114.0 104 48.1
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 4.2e-21 105.9 86 55.8
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.0e-19 101.3 99 47.5
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 6.9e-16 88.6 88 50.0
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 1.5e-15 87.4 67 61.2
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 2.4e-13 80.1 46 73.9
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 2.4e-13 80.1 44 79.5
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 3.3e-10 69.7 44 72.7
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 2.2e-06 57.0 59 44.1
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 2.2e-06 57.0 59 44.1


User provided reference genes

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