Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 2.0e-192 675.6 348 100.0
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 2.7e-141 505.8 369 73.7
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 5.4e-121 438.3 371 63.9
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.3e-116 422.9 369 62.9
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.0e-116 422.2 371 62.3
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 3.4e-115 419.1 371 62.0
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.7e-114 415.6 384 59.9
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 6.3e-114 414.8 345 65.8
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 5.4e-113 411.8 376 61.2
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 5.6e-110 401.7 371 60.6
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 8.0e-109 397.9 377 58.4
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.5e-107 393.7 371 60.6
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 1.1e-105 387.5 373 59.2
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 7.0e-105 384.8 385 56.9
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.6e-104 383.6 281 75.4
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 3.5e-104 382.5 373 57.1
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 1.3e-103 380.6 375 55.5
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 5.0e-103 378.6 371 56.1
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.1e-102 377.5 373 56.3
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.3e-102 375.9 468 48.5
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 3.3e-102 375.9 373 56.0
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 2.8e-101 372.9 374 57.0
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 4.7e-101 372.1 373 55.8
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 6.2e-101 371.7 353 60.3
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.4e-100 370.5 374 55.6
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.8e-100 370.2 371 54.4
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 3.1e-100 369.4 373 54.7
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 1.2e-99 367.5 373 55.5
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 3.4e-99 365.9 373 56.3
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 3.7e-98 362.5 373 55.5
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 4.9e-98 362.1 373 55.5
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 8.3e-98 361.3 374 55.3
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.9e-97 360.1 372 53.8
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 3.2e-97 359.4 376 54.0
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 9.2e-97 357.8 373 54.2
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 2.0e-96 356.7 375 54.9
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 2.0e-96 356.7 375 54.4
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 2.7e-96 356.3 372 53.2
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 1.7e-95 353.6 373 53.6
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 2.3e-95 353.2 374 53.5
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.5e-94 350.5 372 54.3
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 7.3e-94 348.2 374 53.2
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.6e-93 347.1 373 51.2
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 2.8e-93 346.3 374 51.3
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 8.9e-92 341.3 373 51.2
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 1.5e-91 340.5 349 55.6
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 5.8e-91 338.6 371 52.0
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 7.5e-91 338.2 371 51.5
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 7.5e-91 338.2 371 52.3
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.2e-90 336.7 373 51.5
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 1.1e-89 334.3 373 52.5
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 1.4e-89 334.0 263 66.9
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.2e-89 332.8 380 50.3
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 3.5e-88 329.3 372 50.5
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 7.8e-88 328.2 373 49.6
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.0e-87 327.8 377 52.0
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.0e-87 327.8 377 52.0
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 1.3e-87 327.4 374 51.3
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 5.1e-87 325.5 374 50.5
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 2.5e-86 323.2 375 50.7
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 9.5e-86 321.2 374 50.5
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 9.5e-86 321.2 373 50.1
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 4.7e-85 318.9 373 49.6
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 8.1e-85 318.2 597 37.5
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 6.8e-84 315.1 374 49.2
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 1.2e-83 314.3 373 49.1
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.5e-83 313.9 373 48.5
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 2.6e-83 313.2 373 52.0
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 4.4e-83 312.4 373 49.3
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 4.4e-83 312.4 373 49.3
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 4.4e-83 312.4 373 49.3
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 1.3e-82 310.8 266 60.9
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.3e-82 310.8 424 46.0
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.2e-82 310.1 380 47.9
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 2.4e-81 306.6 374 48.4
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.2e-80 304.3 378 49.5
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 2.1e-80 303.5 376 47.1
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 2.7e-80 303.1 322 54.0
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 6.0e-80 302.0 412 46.8
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.7e-79 300.4 264 61.4
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 3.9e-79 299.3 326 53.4
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 5.1e-79 298.9 374 49.2
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 2.8e-77 293.1 323 50.8
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 6.2e-77 292.0 374 47.6
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 1.1e-76 291.2 375 46.1
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 7.1e-73 278.5 263 57.0
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.6e-72 277.3 371 45.8
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 2.3e-71 273.5 340 46.5
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 2.1e-69 266.9 308 49.0
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 3.6e-69 266.2 374 44.4
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 3.6e-69 266.2 264 55.7
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.2e-69 265.4 264 55.3
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 4.0e-68 262.7 357 46.5
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.2e-67 261.2 257 56.4
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 7.6e-67 258.5 254 56.7
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 2.4e-65 253.4 380 43.7
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 7.9e-64 248.4 320 46.6
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 1.5e-62 244.2 235 54.9
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 1.4e-60 237.7 392 39.3
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.0e-59 233.8 222 58.6
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 3.8e-58 229.6 340 44.1
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.9e-57 227.3 395 37.5
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 3.3e-54 216.5 213 56.3
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 8.1e-53 211.8 368 41.3
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 4.0e-52 209.5 368 39.9
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 5.3e-52 209.1 340 41.8
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 2.2e-50 203.8 395 38.5
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 6.5e-50 202.2 214 55.6
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 6.7e-47 192.2 265 45.7
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.1e-46 191.4 171 59.6
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 4.8e-45 186.0 270 44.8
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 5.9e-43 179.1 265 42.6
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.0e-42 178.3 213 48.8
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 1.7e-42 177.6 424 32.5
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 3.7e-37 159.8 120 66.7
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 3.7e-37 159.8 256 42.2
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.1e-36 156.8 204 49.0
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 1.7e-34 151.0 81 90.1
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.5e-25 120.6 159 43.4
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 1.6e-24 117.9 193 39.4
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 6.1e-24 115.9 222 36.0
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 9.7e-22 108.6 162 47.5
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 7.7e-19 99.0 218 31.7
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 8.5e-18 95.5 84 59.5
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 2.5e-17 94.0 116 49.1
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 1.2e-16 91.7 81 60.5
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.6e-16 90.1 83 51.8
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 3.0e-15 87.0 83 57.8
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 4.0e-15 86.7 123 39.8
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 7.0e-12 75.9 84 51.2
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.2e-10 70.9 51 60.8
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.5e-09 68.2 42 73.8
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.0e-07 62.0 69 44.9
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.0e-07 62.0 69 44.9
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.3e-07 60.8 69 43.5
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.5e-06 58.2 96 38.5
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.0e-06 57.8 69 43.5


User provided reference genes

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