Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 3.6e-52 208.0 106 100.0
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 3.5e-39 164.9 106 82.1
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 7.5e-26 120.6 78 80.8
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 7.0e-24 114.0 107 61.7
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 7.8e-23 110.5 95 60.0
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 1.3e-22 109.8 85 67.1
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 3.9e-22 108.2 88 61.4
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 3.9e-22 108.2 94 58.5
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 2.5e-21 105.5 106 58.5
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 4.3e-21 104.8 84 67.9
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 5.6e-21 104.4 100 59.0
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 9.5e-21 103.6 96 58.3
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 1.6e-20 102.8 96 59.4
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 1.6e-20 102.8 98 54.1
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.6e-20 101.7 107 57.0
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.6e-20 101.7 107 57.0
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.6e-20 101.7 107 57.0
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.6e-20 101.7 107 57.0
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 4.7e-20 101.3 99 59.6
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 1.1e-19 100.1 97 54.6
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 1.4e-19 99.8 107 56.1
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.4e-19 99.8 107 56.1
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.4e-19 99.8 107 56.1
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 3.1e-19 98.6 100 54.0
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 4.0e-19 98.2 102 52.9
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 4.0e-19 98.2 109 51.4
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 8.9e-19 97.1 97 54.6
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 1.2e-18 96.7 77 63.6
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 1.5e-18 96.3 83 57.8
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 3.4e-18 95.1 89 55.1
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 4.4e-18 94.7 98 58.2
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 4.4e-18 94.7 96 57.3
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 5.8e-18 94.4 103 53.4
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 5.8e-18 94.4 90 58.9
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 2.2e-17 92.4 108 51.9
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 2.2e-17 92.4 96 55.2
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 2.2e-17 92.4 89 55.1
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 2.9e-17 92.0 100 48.0
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 2.9e-17 92.0 93 54.8
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 1.9e-16 89.4 100 46.0
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 2.4e-16 89.0 100 46.0
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 5.4e-16 87.8 76 59.2
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 5.4e-16 87.8 96 53.1
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 5.4e-16 87.8 78 60.3
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 7.1e-16 87.4 93 51.6
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 7.1e-16 87.4 90 52.2
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 9.2e-16 87.0 97 50.5
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 1.2e-15 86.7 94 47.9
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 1.6e-15 86.3 96 50.0
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 1.6e-15 86.3 90 52.2
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 2.7e-15 85.5 76 60.5
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 2.7e-15 85.5 97 50.5
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 2.7e-15 85.5 88 52.3
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 2.7e-15 85.5 88 52.3
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 2.7e-15 85.5 74 62.2
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 2.7e-15 85.5 96 52.1
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 3.5e-15 85.1 75 58.7
MD07G1101100 Malus domestica HOM05D006948 ORTHO05D008703 6.0e-15 84.3 45 91.1
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 6.0e-15 84.3 78 56.4
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 7.8e-15 84.0 64 64.1
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 7.8e-15 84.0 73 60.3
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.7e-14 82.8 74 59.5
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 1.7e-14 82.8 79 58.2
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 2.3e-14 82.4 99 50.5
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 2.3e-14 82.4 64 60.9
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 2.3e-14 82.4 64 60.9
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 2.3e-14 82.4 102 50.0
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 2.3e-14 82.4 100 49.0
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 3.9e-14 81.6 89 52.8
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 3.9e-14 81.6 106 46.2
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 5.1e-14 81.3 74 58.1
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 5.1e-14 81.3 82 52.4
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 5.1e-14 81.3 74 58.1
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 6.6e-14 80.9 74 58.1
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 6.6e-14 80.9 92 47.8
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 8.6e-14 80.5 78 57.7
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 1.1e-13 80.1 81 55.6
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 1.5e-13 79.7 101 49.5
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 1.9e-13 79.3 96 51.0
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 1.9e-13 79.3 78 53.8
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 2.5e-13 79.0 81 54.3
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 2.5e-13 79.0 87 52.9
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 3.3e-13 78.6 100 48.0
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 5.6e-13 77.8 74 56.8
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 5.6e-13 77.8 100 45.0
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 7.3e-13 77.4 78 59.0
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 7.3e-13 77.4 74 55.4
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 1.2e-12 76.6 73 53.4
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.6e-12 76.3 82 51.2
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 1.6e-12 76.3 94 47.9
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 2.1e-12 75.9 95 50.5
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 2.8e-12 75.5 70 54.3
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 2.8e-12 75.5 73 52.1
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 3.6e-12 75.1 102 46.1
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 3.6e-12 75.1 123 35.8
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 1.4e-11 73.2 78 52.6
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 3.1e-11 72.0 71 54.9
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 8.9e-11 70.5 68 54.4
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 3.4e-10 68.6 70 51.4
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 4.4e-10 68.2 75 53.3
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 7.6e-10 67.4 78 47.4
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 6.4e-09 64.3 71 53.5
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 6.4e-09 64.3 71 53.5
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.4e-08 63.2 84 47.6
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.4e-08 63.2 84 47.6
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 2.4e-08 62.4 82 41.5
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 3.2e-08 62.0 68 52.9
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 1.2e-07 60.1 48 62.5
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 6.0e-07 57.8 57 47.4
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 1.7e-06 56.2 67 52.2


User provided reference genes

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