Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1050400 Malus domestica HOM05D000108 ORTHO05D245690 7.7e-43 176.8 92 100.0
MD10G1088400 Malus domestica HOM05D000108 ORTHO05D001378 3.7e-29 131.3 94 74.5
Prupe.8G115500 Prunus persica HOM05D000108 ORTHO05D001378 1.1e-28 129.8 94 73.4
Haze_01877 Corylus avellana HOM05D000108 ORTHO05D001378 1.6e-24 115.9 92 66.3
CiPaw.05G056700 Carya illinoinensis HOM05D000108 ORTHO05D001378 1.2e-22 109.8 92 63.0
QL11p038632 Quercus lobata HOM05D000108 ORTHO05D001378 1.7e-21 105.9 92 62.0
Manes.15G144100 Manihot esculenta HOM05D000108 ORTHO05D001378 7.0e-20 100.5 92 57.6
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.7e-19 98.6 93 60.2
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.7e-19 98.6 93 59.1
FvH4_2g07030 Fragaria vesca HOM05D000108 ORTHO05D001378 3.5e-19 98.2 93 59.1
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.5e-19 98.2 93 59.1
RcHm_v2.0_Chr6g0259391 Rosa chinensis HOM05D000108 ORTHO05D001378 4.5e-19 97.8 93 59.1
FAN27G1729 Fragaria x ananassa HOM05D000108 ORTHO05D001378 1.7e-18 95.9 93 58.1
COL.COLO4_11727 Corchorus olitorius HOM05D000108 ORTHO05D001378 2.2e-18 95.5 92 57.6
CANSAT25G3251 Cannabis sativa HOM05D000108 ORTHO05D001378 5.0e-18 94.4 94 54.3
Thecc.02G094900 Theobroma cacao HOM05D000108 ORTHO05D001378 6.5e-18 94.0 92 56.5
Potri.004G145800 Populus trichocarpa HOM05D000108 ORTHO05D001378 1.9e-17 92.4 94 51.1
Atru.chr5.2828 Acer truncatum HOM05D000108 ORTHO05D001378 5.5e-17 90.9 95 53.7
Duzib248G1551 Durio zibethinus HOM05D000108 ORTHO05D001378 7.2e-17 90.5 92 57.6
Nn5g29375 Nelumbo nucifera HOM05D000108 ORTHO05D001378 1.6e-16 89.4 95 53.7
Sc18g0004930 Simmondsia chinensis HOM05D000108 ORTHO05D001378 3.6e-16 88.2 87 54.0
TWI79G0871 Tripterygium wilfordii HOM05D000108 ORTHO05D001378 6.1e-16 87.4 92 53.3
Hma1.2p1_1543F.1_g289800 Hydrangea macrophylla HOM05D000108 ORTHO05D001378 8.0e-16 87.0 86 55.8
TAR376G0097 Trochodendron aralioides HOM05D000108 ORTHO05D001378 8.0e-16 87.0 92 50.0
CSS0039161 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001378 1.4e-15 86.3 91 51.6
Dinv42117 Davidia involucrata HOM05D000108 ORTHO05D001378 1.4e-15 86.3 86 58.1
Cpa.g.sc62.59 Carica papaya HOM05D000108 ORTHO05D001378 1.8e-15 85.9 88 54.5
Gohir.A03G190800 Gossypium hirsutum HOM05D000108 ORTHO05D001378 4.0e-15 84.7 88 53.4
Ciclev10027659m.g Citrus clementina HOM05D000108 ORTHO05D001378 5.2e-15 84.3 94 50.0
Actinidia27937 Actinidia chinensis HOM05D000108 ORTHO05D001378 6.8e-15 84.0 89 52.8
Gohir.D02G211800 Gossypium hirsutum HOM05D000108 ORTHO05D001378 1.2e-14 83.2 88 53.4
Gorai.005G239700 Gossypium raimondii HOM05D000108 ORTHO05D001378 1.2e-14 83.2 88 53.4
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 1.5e-14 82.8 93 51.6
Eucgr.I01183 Eucalyptus grandis HOM05D000108 ORTHO05D001378 1.5e-14 82.8 94 47.9
ATR0225G014 Amborella trichopoda HOM05D000108 ORTHO05D001378 2.0e-14 82.4 93 50.5
Rhsim05G0079800 Rhododendron simsii HOM05D000108 ORTHO05D001378 5.7e-14 80.9 89 51.7
Lj9C361T16 Lonicera japonica HOM05D000108 ORTHO05D001378 9.8e-14 80.1 93 48.4
Hund00314 Selenicereus undatus HOM05D000108 ORTHO05D001378 1.7e-13 79.3 92 43.5
MBI16_g19904_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001378 2.2e-13 79.0 90 51.1
THA.LOC104803444 Tarenaya hassleriana HOM05D000108 ORTHO05D001378 2.2e-13 79.0 93 45.2
AUR62016639 Chenopodium quinoa HOM05D000108 ORTHO05D001378 6.3e-13 77.4 95 41.1
AUR62011421 Chenopodium quinoa HOM05D000108 ORTHO05D001378 1.4e-12 76.3 95 40.0
BraA05t21894Z Brassica rapa HOM05D000108 ORTHO05D001378 2.4e-12 75.5 93 46.2
MELO3C021920.2 Cucumis melo HOM05D000108 ORTHO05D001378 2.4e-12 75.5 94 44.7
ClCG09G017600 Citrullus lanatus HOM05D000108 ORTHO05D001378 3.1e-12 75.1 94 43.6
Sopen01g050890 Solanum pennellii HOM05D000108 ORTHO05D001378 3.1e-12 75.1 88 50.0
PGSC0003DMG400025904 Solanum tuberosum HOM05D000108 ORTHO05D001378 3.1e-12 75.1 86 50.0
EL10Ac9g21810 Beta vulgaris HOM05D000108 ORTHO05D001378 4.1e-12 74.7 93 41.9
Cc02_g18360 Coffea canephora HOM05D000108 ORTHO05D001378 4.1e-12 74.7 93 46.2
CARHR094490 Cardamine hirsuta HOM05D000108 ORTHO05D001378 5.4e-12 74.3 93 47.3
Sed0010848 Sechium edule HOM05D000108 ORTHO05D001378 5.4e-12 74.3 94 45.7
Solyc01g108670.4 Solanum lycopersicum HOM05D000108 ORTHO05D001378 5.4e-12 74.3 86 50.0
Aa31LG8G5870 Aethionema arabicum HOM05D000108 ORTHO05D001378 7.0e-12 73.9 93 47.3
CsaV3_2G014220 Cucumis sativus L. HOM05D000108 ORTHO05D001378 7.0e-12 73.9 94 43.6
Migut.B00303 Erythranthe guttata HOM05D000108 ORTHO05D001378 7.0e-12 73.9 91 47.3
PSO170G6186 Papaver somniferum HOM05D000108 ORTHO05D001378 7.0e-12 73.9 93 44.1
Nitab4.5_0001401g0070 Nicotiana tabacum HOM05D000108 ORTHO05D001378 1.6e-11 72.8 80 53.8
BcaC05g28528 Brassica carinata HOM05D000108 ORTHO05D001378 2.0e-11 72.4 93 44.1
A05p30550 Brassica napus HOM05D000108 ORTHO05D001378 2.0e-11 72.4 93 44.1
C05p46290 Brassica napus HOM05D000108 ORTHO05D001378 2.0e-11 72.4 93 44.1
BolC5t33358H Brassica oleracea HOM05D000108 ORTHO05D001378 2.0e-11 72.4 93 44.1
Hund06191 Selenicereus undatus HOM05D000108 ORTHO05D001378 2.0e-11 72.4 93 39.8
Aqoxy5G01420 Aquilegia oxysepala HOM05D000108 ORTHO05D001378 2.7e-11 72.0 89 47.2
AL3G32440 Arabidopsis lyrata HOM05D000108 ORTHO05D001378 2.7e-11 72.0 92 47.8
Carub.0003s1888 Capsella rubella HOM05D000108 ORTHO05D001378 2.7e-11 72.0 93 46.2
Nitab4.5_0003726g0080 Nicotiana tabacum HOM05D000108 ORTHO05D001378 2.7e-11 72.0 85 49.4
SGA_v2.0_scaffold58G20603 Striga asiatica HOM05D000108 ORTHO05D001378 2.7e-11 72.0 83 48.2
CAN.G322.42 Capsicum annuum HOM05D000108 ORTHO05D001378 4.5e-11 71.2 86 47.7
AT3G19050 Arabidopsis thaliana HOM05D000108 ORTHO05D001378 7.8e-11 70.5 92 45.7
BcaB06g25958 Brassica carinata HOM05D000108 ORTHO05D001378 1.0e-10 70.1 93 44.1
Sp3g17150 Schrenkiella parvula HOM05D000108 ORTHO05D001378 1.7e-10 69.3 93 45.2
Peaxi162Scf00016g01521 Petunia axillaris HOM05D000108 ORTHO05D001378 2.3e-10 68.9 80 50.0
ECA240G0498 Erigeron canadensis HOM05D000108 ORTHO05D001378 5.0e-10 67.8 93 41.9
MSTRG.20132 Avicennia marina HOM05D000108 ORTHO05D001378 6.6e-10 67.4 82 50.0
Thhalv10019870m.g Eutrema salsugineum HOM05D000108 ORTHO05D001378 6.6e-10 67.4 93 44.1
Oeu010585.1 Olea europaea HOM05D000108 ORTHO05D001378 6.6e-10 67.4 93 43.0
PGR142G0773 Punica granatum HOM05D000108 ORTHO05D001378 1.1e-09 66.6 94 40.4
Ca_18653_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001378 1.5e-09 66.2 52 63.5
SEGI_19035 Sequoiadendron giganteum HOM05D000108 ORTHO05D001378 4.3e-09 64.7 93 40.9
Ah.01g020020 Amaranthus hybridus HOM05D000108 ORTHO05D001378 7.3e-09 63.9 95 35.8
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 7.3e-09 63.9 83 44.6
Sc02g0003640 Simmondsia chinensis HOM05D000108 ORTHO05D001378 1.2e-08 63.2 75 50.7
GSVIVG01031809001 Vitis vinifera HOM05D000108 ORTHO05D001378 1.2e-08 63.2 50 62.0
Medtr4g087040 Medicago truncatula HOM05D000108 ORTHO05D001378 1.6e-08 62.8 53 60.4
Phvul.003G293500 Phaseolus vulgaris HOM05D000108 ORTHO05D001378 2.1e-08 62.4 53 60.4
unitig_60.g25451 Utricularia gibba HOM05D000108 ORTHO05D001378 2.1e-08 62.4 82 46.3
arahy.Tifrunner.gnm1.ann1.S11XWG Arachis hypogaea HOM05D000108 ORTHO05D001378 2.8e-08 62.0 53 58.5
arahy.Tifrunner.gnm1.ann1.I9YSCG Arachis hypogaea HOM05D000108 ORTHO05D001378 4.7e-08 61.2 53 58.5
Glyma.02G135700 Glycine max HOM05D000108 ORTHO05D001378 4.7e-08 61.2 53 56.6
Lalb_Chr09g0328141 Lupinus albus HOM05D000108 ORTHO05D001378 4.7e-08 61.2 52 59.6
Lj4g0019708 Lotus japonicus HOM05D000108 ORTHO05D001378 6.1e-08 60.8 53 56.6
SalBow6G5829 Salvia bowleyana HOM05D000108 ORTHO05D001378 6.1e-08 60.8 94 40.4
VMungo0251G2641 Vigna mungo HOM05D000108 ORTHO05D001378 8.0e-08 60.5 53 58.5
Glyma.07G209300 Glycine max HOM05D000108 ORTHO05D001378 1.0e-07 60.1 53 56.6
CAN.G14.32 Capsicum annuum HOM05D000108 ORTHO05D001378 2.3e-07 58.9 57 54.4
unitig_0.g77 Utricularia gibba HOM05D000108 ORTHO05D001378 3.0e-07 58.5 74 45.9
Os12g0590500 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001378 4.0e-07 58.2 88 40.9
Solyc01g057310.4 Solanum lycopersicum HOM05D000108 ORTHO05D001378 4.0e-07 58.2 57 54.4
Nitab4.5_0001008g0010 Nicotiana tabacum HOM05D000108 ORTHO05D001378 5.2e-07 57.8 57 54.4
Nitab4.5_0000992g0070 Nicotiana tabacum HOM05D000108 ORTHO05D001378 6.8e-07 57.4 57 54.4
Psat7g123720 Pisum sativum HOM05D000108 ORTHO05D001378 6.8e-07 57.4 53 56.6
Sopen01g021940 Solanum pennellii HOM05D000108 ORTHO05D001378 6.8e-07 57.4 57 54.4
Potri.010G153000 Populus trichocarpa HOM05D000108 ORTHO05D001378 1.2e-06 56.6 57 50.9
CiPaw.01G131200 Carya illinoinensis HOM05D000108 ORTHO05D001378 1.5e-06 56.2 57 52.6
Peaxi162Scf00126g01218 Petunia axillaris HOM05D000108 ORTHO05D001378 1.5e-06 56.2 57 52.6
GSVIVG01017669001 Vitis vinifera HOM05D000108 ORTHO05D001378 1.5e-06 56.2 57 56.1
TWI73G0460 Tripterygium wilfordii HOM05D000108 ORTHO05D001378 2.0e-06 55.8 57 54.4
ATR0796G054 Amborella trichopoda HOM05D000108 ORTHO05D001378 3.4e-06 55.1 87 39.1
Aqoxy5G02769 Aquilegia oxysepala HOM05D000108 ORTHO05D001378 3.4e-06 55.1 57 52.6
MBI18_g28904_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001378 3.4e-06 55.1 77 44.2
Ciclev10004126m.g Citrus clementina HOM05D000108 ORTHO05D001378 4.4e-06 54.7 57 54.4
TAR636G1358 Trochodendron aralioides HOM05D000108 ORTHO05D001378 4.4e-06 54.7 57 52.6
Rhsim04G0246800 Rhododendron simsii HOM05D000108 ORTHO05D001378 5.7e-06 54.3 57 54.4
Dinv15629 Davidia involucrata HOM05D000108 ORTHO05D001378 7.5e-06 53.9 57 50.9
Duzib151G0936 Durio zibethinus HOM05D000108 ORTHO05D001378 7.5e-06 53.9 57 50.9
arahy.Tifrunner.gnm1.ann1.6MPP0P Arachis hypogaea HOM05D000108 ORTHO05D001378 9.8e-06 53.5 57 47.4
arahy.Tifrunner.gnm1.ann1.NH8KX3 Arachis hypogaea HOM05D000108 ORTHO05D001378 9.8e-06 53.5 57 47.4
CDE04G1303 Ceratophyllum demersum HOM05D000108 ORTHO05D001378 9.8e-06 53.5 66 50.0
Lj4g0009019 Lotus japonicus HOM05D000108 ORTHO05D001378 9.8e-06 53.5 57 47.4
Nn4g25415 Nelumbo nucifera HOM05D000108 ORTHO05D001378 9.8e-06 53.5 57 52.6
Oeu003690.1 Olea europaea HOM05D000108 ORTHO05D001378 9.8e-06 53.5 63 49.2
SalBow8G0276 Salvia bowleyana HOM05D000108 ORTHO05D001378 9.8e-06 53.5 84 41.7


User provided reference genes

Program Settings