Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1044900 Malus domestica HOM05D005791 ORTHO05D007452 9.5e-59 229.9 114 100.0
MD07G1238300 Malus domestica HOM05D005791 ORTHO05D007452 8.6e-52 206.8 113 86.7
MD11G1140100 Malus domestica HOM05D005791 ORTHO05D007452 2.7e-45 185.3 113 80.5
RcHm_v2.0_Chr1g0372751 Rosa chinensis HOM05D005791 ORTHO05D007452 3.3e-43 178.3 113 75.2
FAN10G1145 Fragaria x ananassa HOM05D005791 ORTHO05D007452 8.9e-41 170.2 113 70.8
PGR044G2580 Punica granatum HOM05D005791 ORTHO05D007452 4.4e-40 167.9 117 68.4
Lalb_Chr08g0239301 Lupinus albus HOM05D005791 ORTHO05D007452 9.8e-40 166.8 113 68.1
unitig_736.g22425 Utricularia gibba HOM05D005791 ORTHO05D007452 9.8e-40 166.8 113 67.3
FvH4_7g26290 Fragaria vesca HOM05D005791 ORTHO05D007452 2.2e-39 165.6 113 69.9
FAN06G4413 Fragaria x ananassa HOM05D005791 ORTHO05D007452 2.2e-39 165.6 113 69.9
CSS0010135 Camellia sinensis var. sinensis HOM05D005791 ORTHO05D007452 3.7e-39 164.9 113 67.3
Migut.F01222 Erythranthe guttata HOM05D005791 ORTHO05D007452 8.3e-39 163.7 113 67.3
Psat5g069880 Pisum sativum HOM05D005791 ORTHO05D007452 1.1e-38 163.3 113 67.3
Dinv21869 Davidia involucrata HOM05D005791 ORTHO05D007452 1.4e-38 162.9 113 65.5
COL.COLO4_19494 Corchorus olitorius HOM05D005791 ORTHO05D007452 2.4e-38 162.2 113 66.4
Hma1.2p1_0264F.1_g105800 Hydrangea macrophylla HOM05D005791 ORTHO05D007452 2.4e-38 162.2 113 66.4
Oeu044175.1 Olea europaea HOM05D005791 ORTHO05D007452 2.4e-38 162.2 113 67.3
Rhsim03G0154800 Rhododendron simsii HOM05D005791 ORTHO05D007452 2.4e-38 162.2 114 67.5
TPR.G13959 Trifolium pratense HOM05D005791 ORTHO05D007452 3.2e-38 161.8 113 66.4
Ca_16850_v3 Cicer arietinum L. HOM05D005791 ORTHO05D007452 5.4e-38 161.0 113 66.4
Ciclev10031975m.g Citrus clementina HOM05D005791 ORTHO05D007452 5.4e-38 161.0 113 69.0
VMungo1309G2173 Vigna mungo HOM05D005791 ORTHO05D007452 5.4e-38 161.0 113 66.4
Actinidia31644 Actinidia chinensis HOM05D005791 ORTHO05D007452 9.2e-38 160.2 113 64.6
Nitab4.5_0001493g0030 Nicotiana tabacum HOM05D005791 ORTHO05D007452 9.2e-38 160.2 113 67.3
Rhsim03G0154600 Rhododendron simsii HOM05D005791 ORTHO05D007452 9.2e-38 160.2 114 66.7
Thecc.10G187200 Theobroma cacao HOM05D005791 ORTHO05D007452 1.2e-37 159.8 115 65.2
CANSAT56G2835 Cannabis sativa HOM05D005791 ORTHO05D007452 1.6e-37 159.5 113 66.4
Cc02_g05050 Coffea canephora HOM05D005791 ORTHO05D007452 1.6e-37 159.5 113 65.5
Potri.019G065700 Populus trichocarpa HOM05D005791 ORTHO05D007452 1.6e-37 159.5 116 68.1
TAR636G2576 Trochodendron aralioides HOM05D005791 ORTHO05D007452 1.6e-37 159.5 113 67.3
AT3G56460 Arabidopsis thaliana HOM05D005791 ORTHO05D007452 2.7e-37 158.7 113 69.0
Glyma.04G224400 Glycine max HOM05D005791 ORTHO05D007452 3.5e-37 158.3 113 65.5
HanXRQChr05g0144231 Helianthus annuus HOM05D005791 ORTHO05D007452 3.5e-37 158.3 113 64.6
Lj1A970G57 Lonicera japonica HOM05D005791 ORTHO05D007452 3.5e-37 158.3 113 62.8
SalBow2G0183 Salvia bowleyana HOM05D005791 ORTHO05D007452 3.5e-37 158.3 114 67.5
CiPaw.02G199500 Carya illinoinensis HOM05D005791 ORTHO05D007452 4.6e-37 157.9 113 64.6
Nitab4.5_0000103g0040 Nicotiana tabacum HOM05D005791 ORTHO05D007452 4.6e-37 157.9 113 64.6
Sabra19G0078900 Salix brachista HOM05D005791 ORTHO05D007452 4.6e-37 157.9 116 66.4
Aqoxy2G00691 Aquilegia oxysepala HOM05D005791 ORTHO05D007452 6.0e-37 157.5 113 66.4
Cfa001181 Carpinus fangiana HOM05D005791 ORTHO05D007452 6.0e-37 157.5 113 65.5
Medtr3g093620 Medicago truncatula HOM05D005791 ORTHO05D007452 6.0e-37 157.5 113 64.6
TWI09G0105 Tripterygium wilfordii HOM05D005791 ORTHO05D007452 6.0e-37 157.5 113 68.1
arahy.Tifrunner.gnm1.ann1.B7UYEY Arachis hypogaea HOM05D005791 ORTHO05D007452 7.8e-37 157.1 113 67.3
arahy.Tifrunner.gnm1.ann1.PBP7IS Arachis hypogaea HOM05D005791 ORTHO05D007452 7.8e-37 157.1 113 67.3
HanXRQChr08g0222991 Helianthus annuus HOM05D005791 ORTHO05D007452 7.8e-37 157.1 113 66.4
Glyma.06G140300 Glycine max HOM05D005791 ORTHO05D007452 1.0e-36 156.8 113 65.5
vmacro06873 Vaccinium macrocarpon HOM05D005791 ORTHO05D007452 1.0e-36 156.8 113 61.9
Carub.0005s2323 Capsella rubella HOM05D005791 ORTHO05D007452 1.3e-36 156.4 113 67.3
A07p22940 Brassica napus HOM05D005791 ORTHO05D007452 1.7e-36 156.0 113 66.4
BraA07t29959Z Brassica rapa HOM05D005791 ORTHO05D007452 1.7e-36 156.0 113 66.4
MSTRG.153 Avicennia marina HOM05D005791 ORTHO05D007452 2.3e-36 155.6 113 66.4
Lsat_1_v5_gn_8_11160 Lactuca sativa HOM05D005791 ORTHO05D007452 2.3e-36 155.6 114 65.8
Peaxi162Scf00073g02117 Petunia axillaris HOM05D005791 ORTHO05D007452 2.3e-36 155.6 114 66.7
Sp5g06080 Schrenkiella parvula HOM05D005791 ORTHO05D007452 2.3e-36 155.6 114 68.4
SGA_v2.0_scaffold78G25489 Striga asiatica HOM05D005791 ORTHO05D007452 3.0e-36 155.2 113 63.7
Gohir.A05G276800 Gossypium hirsutum HOM05D005791 ORTHO05D007452 3.9e-36 154.8 116 64.7
Manes.10G004300 Manihot esculenta HOM05D005791 ORTHO05D007452 5.1e-36 154.5 113 66.4
AL5G37790 Arabidopsis lyrata HOM05D005791 ORTHO05D007452 6.6e-36 154.1 113 67.3
Lj1g0000176 Lotus japonicus HOM05D005791 ORTHO05D007452 6.6e-36 154.1 113 63.7
Phvul.009G041600 Phaseolus vulgaris HOM05D005791 ORTHO05D007452 6.6e-36 154.1 113 64.6
Thhalv10006076m.g Eutrema salsugineum HOM05D005791 ORTHO05D007452 8.6e-36 153.7 113 66.4
ATR1127G121 Amborella trichopoda HOM05D005791 ORTHO05D007452 1.1e-35 153.3 113 64.6
Cpa.g.c38712.1 Carica papaya HOM05D005791 ORTHO05D007452 1.1e-35 153.3 113 63.7
Gohir.D05G278500 Gossypium hirsutum HOM05D005791 ORTHO05D007452 1.1e-35 153.3 116 63.8
Gorai.009G292000 Gossypium raimondii HOM05D005791 ORTHO05D007452 1.1e-35 153.3 116 63.8
Aa31LG10G11340 Aethionema arabicum HOM05D005791 ORTHO05D007452 1.5e-35 152.9 113 65.5
CAN.G77.10 Capsicum annuum HOM05D005791 ORTHO05D007452 1.5e-35 152.9 114 63.2
CsaV3_5G039240 Cucumis sativus L. HOM05D005791 ORTHO05D007452 1.9e-35 152.5 113 66.4
Atru.chr12.209 Acer truncatum HOM05D005791 ORTHO05D007452 3.3e-35 151.8 113 64.6
Solyc03g095360.3 Solanum lycopersicum HOM05D005791 ORTHO05D007452 3.3e-35 151.8 113 62.8
ClCG11G005490 Citrullus lanatus HOM05D005791 ORTHO05D007452 4.3e-35 151.4 114 65.8
Eucgr.G03169 Eucalyptus grandis HOM05D005791 ORTHO05D007452 4.3e-35 151.4 119 62.2
Sopen03g025370 Solanum pennellii HOM05D005791 ORTHO05D007452 4.3e-35 151.4 113 62.8
Sopen03g025380 Solanum pennellii HOM05D005791 ORTHO05D007452 4.3e-35 151.4 113 62.8
Duzib106G2079 Durio zibethinus HOM05D005791 ORTHO05D007452 5.6e-35 151.0 119 60.5
GSVIVG01032867001 Vitis vinifera HOM05D005791 ORTHO05D007452 5.6e-35 151.0 113 66.4
MELO3C022102.2 Cucumis melo HOM05D005791 ORTHO05D007452 1.2e-34 149.8 114 66.7
BcaC08g44785 Brassica carinata HOM05D005791 ORTHO05D007452 1.6e-34 149.4 113 63.7
BolC6t37528H Brassica oleracea HOM05D005791 ORTHO05D007452 1.6e-34 149.4 113 63.7
MBI15_g31024_MAGBIO Magnolia biondii HOM05D005791 ORTHO05D007452 1.6e-34 149.4 113 62.8
PSO339G3520 Papaver somniferum HOM05D005791 ORTHO05D007452 2.1e-34 149.1 113 66.4
PSO384G5040 Papaver somniferum HOM05D005791 ORTHO05D007452 2.1e-34 149.1 113 67.3
BcaB02g07651 Brassica carinata HOM05D005791 ORTHO05D007452 2.8e-34 148.7 113 62.8
Hund13427 Selenicereus undatus HOM05D005791 ORTHO05D007452 2.8e-34 148.7 114 65.8
Nn2g10215 Nelumbo nucifera HOM05D005791 ORTHO05D007452 3.6e-34 148.3 113 61.9
C06p23560 Brassica napus HOM05D005791 ORTHO05D007452 4.7e-34 147.9 113 62.8
AUR62031667 Chenopodium quinoa HOM05D005791 ORTHO05D007452 4.7e-34 147.9 112 66.1
AUR62032550 Chenopodium quinoa HOM05D005791 ORTHO05D007452 4.7e-34 147.9 114 64.9
HPP92_024985 Vanilla planifolia HOM05D005791 ORTHO05D007452 8.1e-34 147.1 113 58.4
Sed0013812 Sechium edule HOM05D005791 ORTHO05D007452 1.1e-33 146.7 113 63.7
DCAR_014656 Daucus carota HOM05D005791 ORTHO05D007452 1.4e-33 146.4 113 60.2
CDE12G0791 Ceratophyllum demersum HOM05D005791 ORTHO05D007452 2.3e-33 145.6 113 61.1
Gohir.A13G008500 Gossypium hirsutum HOM05D005791 ORTHO05D007452 4.0e-33 144.8 113 58.4
CARHR166580 Cardamine hirsuta HOM05D005791 ORTHO05D007452 5.2e-33 144.4 113 63.7
QL08p065276 Quercus lobata HOM05D005791 ORTHO05D007452 5.2e-33 144.4 113 62.8
THA.LOC104803216 Tarenaya hassleriana HOM05D005791 ORTHO05D007452 8.9e-33 143.7 115 64.3
EL10Ac2g02691 Beta vulgaris HOM05D005791 ORTHO05D007452 2.0e-32 142.5 114 62.3
vmacro06874 Vaccinium macrocarpon HOM05D005791 ORTHO05D007452 2.0e-32 142.5 113 59.3
Sc14g0005690 Simmondsia chinensis HOM05D005791 ORTHO05D007452 4.4e-32 141.4 115 62.6
Ah.10g030630 Amaranthus hybridus HOM05D005791 ORTHO05D007452 7.6e-32 140.6 114 61.4
Gohir.A13G008400 Gossypium hirsutum HOM05D005791 ORTHO05D007452 9.9e-32 140.2 113 58.4
Gohir.D13G009100 Gossypium hirsutum HOM05D005791 ORTHO05D007452 3.8e-31 138.3 113 56.6
Gorai.013G009900 Gossypium raimondii HOM05D005791 ORTHO05D007452 3.8e-31 138.3 113 56.6
Oeu008099.1 Olea europaea HOM05D002347 ORTHO05D002969 8.4e-31 137.1 113 64.6
Pp3c16_1190 Physcomitrium patens HOM05D005791 ORTHO05D007452 6.0e-29 131.0 113 59.3
Zm00001eb070150 Zea mays HOM05D005791 ORTHO05D007452 7.8e-29 130.6 113 55.8
ECA233G0423 Erigeron canadensis HOM05D005791 ORTHO05D007452 5.1e-28 127.9 117 54.7
ECA233G3482 Erigeron canadensis HOM05D005791 ORTHO05D007452 6.6e-28 127.5 115 56.5
SEGI_06672 Sequoiadendron giganteum HOM05D005791 ORTHO05D007452 8.6e-28 127.1 113 54.9
HanXRQChr08g0222851 Helianthus annuus HOM05D005791 ORTHO05D007452 1.5e-27 126.3 113 55.8
DCAR_018050 Daucus carota HOM05D005791 ORTHO05D007452 3.6e-26 121.7 113 50.4
Solyc03g095320.1 Solanum lycopersicum HOM05D005791 ORTHO05D007452 1.2e-24 116.7 86 62.8
Os05g0313500 Oryza sativa ssp. japonica HOM05D005791 ORTHO05D007452 1.5e-24 116.3 87 59.8
AagrBONN_evm.TU.Sc2ySwM_362.2815 Anthoceros agrestis HOM05D005791 ORTHO05D007452 1.7e-23 112.8 111 49.5
CDE10G1308 Ceratophyllum demersum HOM05D005791 ORTHO05D007452 1.1e-22 110.2 88 60.2
Mapoly0006s0302 Marchantia polymorpha HOM05D005791 ORTHO05D007452 1.2e-21 106.7 113 46.9
SMO164G0125 Selaginella moellendorffii HOM05D005791 ORTHO05D007452 7.8e-21 104.0 113 46.0
HPP92_024988 Vanilla planifolia HOM05D005791 ORTHO05D007452 8.1e-18 94.0 94 51.1
SalBow5G4812 Salvia bowleyana HOM05D005791 ORTHO05D007452 1.7e-15 86.3 52 73.1
Cre16.g674050 Chlamydomonas reinhardtii HOM05D005791 ORTHO05D007452 5.4e-14 81.3 108 41.7
MCO07G403 Micromonas commoda HOM05D005791 ORTHO05D007452 1.6e-13 79.7 100 43.0
PRCOL_00005743 Prasinoderma coloniale HOM05D005791 ORTHO05D007452 2.4e-09 65.9 60 51.7
BcaNung02778 Brassica carinata HOM05D001548 ORTHO05D003922 4.5e-08 61.6 94 36.2
Thhalv10025712m.g Eutrema salsugineum HOM05D001548 ORTHO05D003922 5.8e-08 61.2 94 36.2
Sp7g19720 Schrenkiella parvula HOM05D001548 ORTHO05D003922 5.8e-08 61.2 94 36.2
Glyma.19G008600 Glycine max HOM05D000599 ORTHO05D000554 2.9e-07 58.9 77 40.3
RcHm_v2.0_Chr5g0006731 Rosa chinensis HOM05D001548 ORTHO05D003922 2.9e-07 58.9 92 37.0
THA.LOC104812957 Tarenaya hassleriana HOM05D001548 ORTHO05D003922 3.8e-07 58.5 67 41.8
Aqoxy1G02697 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 6.4e-07 57.8 67 37.3
Manes.16G022100 Manihot esculenta HOM05D001548 ORTHO05D003922 1.1e-06 57.0 108 30.6
A01p12900 Brassica napus HOM05D001548 ORTHO05D003922 1.4e-06 56.6 83 39.8
C01p15540 Brassica napus HOM05D001548 ORTHO05D003922 1.4e-06 56.6 83 39.8
BraA01t01234Z Brassica rapa HOM05D001548 ORTHO05D003922 1.4e-06 56.6 83 39.8
Eucgr.D00699 Eucalyptus grandis HOM05D001548 ORTHO05D003922 1.4e-06 56.6 100 37.0
Eucgr.L02843 Eucalyptus grandis HOM05D001548 ORTHO05D003922 1.4e-06 56.6 100 37.0
Lalb_Chr20g0122221 Lupinus albus HOM05D001548 ORTHO05D003922 1.9e-06 56.2 108 31.5
Oeu053926.1 Olea europaea HOM05D001548 ORTHO05D003922 1.9e-06 56.2 84 34.5
Lsat_1_v5_gn_1_90381 Lactuca sativa HOM05D001548 ORTHO05D003901 2.4e-06 55.8 96 33.3
Sabra04G0022000 Salix brachista HOM05D001548 ORTHO05D003922 2.4e-06 55.8 67 37.3
Lsat_1_v5_gn_4_57401 Lactuca sativa HOM05D001548 ORTHO05D003922 3.2e-06 55.5 89 34.8
Oeu053927.1 Olea europaea HOM05D001548 ORTHO05D003922 3.2e-06 55.5 84 34.5
Aa31LG6G3590 Aethionema arabicum HOM05D001548 ORTHO05D003922 4.2e-06 55.1 67 35.8
Aqoxy1G00822 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 4.2e-06 55.1 67 35.8
Pp3c12_2540 Physcomitrium patens HOM05D001548 ORTHO05D003922 4.2e-06 55.1 87 36.8
VMungo1383G2843 Vigna mungo HOM05D000599 ORTHO05D000554 5.5e-06 54.7 82 34.1
AT4G21580 Arabidopsis thaliana HOM05D001548 ORTHO05D003922 7.1e-06 54.3 67 38.8
BolC1t01506H Brassica oleracea HOM05D001548 ORTHO05D003922 7.1e-06 54.3 83 38.6
CARHR228270 Cardamine hirsuta HOM05D001548 ORTHO05D003922 7.1e-06 54.3 67 37.3
VMungo0043G0001 Vigna mungo HOM05D000599 ORTHO05D000554 7.1e-06 54.3 82 36.6
AL7G32440 Arabidopsis lyrata HOM05D001548 ORTHO05D003922 9.3e-06 53.9 67 40.3
Potri.004G036100 Populus trichocarpa HOM05D001548 ORTHO05D003922 9.3e-06 53.9 67 35.8


User provided reference genes

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