Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1040100 Malus domestica HOM05D000120 ORTHO05D009410 3.3e-136 488.4 252 100.0
MD10G1063700 Malus domestica HOM05D000120 ORTHO05D009410 3.9e-121 438.3 250 91.6
Prupe.8G085200 Prunus persica HOM05D000120 ORTHO05D009410 2.7e-74 282.7 247 64.8
FAN20G2164 Fragaria x ananassa HOM05D000120 ORTHO05D009410 2.2e-63 246.5 254 57.1
FvH4_2g10380 Fragaria vesca HOM05D000120 ORTHO05D009410 7.0e-62 241.5 254 56.3
FAN24G2037 Fragaria x ananassa HOM05D000120 ORTHO05D009410 3.5e-61 239.2 254 55.9
RcHm_v2.0_Chr6g0267851 Rosa chinensis HOM05D000120 ORTHO05D009410 5.9e-61 238.4 249 56.6
Dinv23458 Davidia involucrata HOM05D000120 ORTHO05D009410 4.8e-55 218.8 249 51.4
FAN27G2529 Fragaria x ananassa HOM05D000120 ORTHO05D009410 2.7e-50 203.0 212 57.1
Thecc.02G075700 Theobroma cacao HOM05D000120 ORTHO05D009410 8.0e-50 201.4 252 45.6
Cfa005100 Carpinus fangiana HOM05D000722 ORTHO05D000590 2.3e-49 199.9 247 48.2
Duzib248G0587 Durio zibethinus HOM05D000120 ORTHO05D009410 2.6e-48 196.4 252 46.4
Haze_02260 Corylus avellana HOM05D000120 ORTHO05D009410 2.2e-47 193.4 246 46.7
COL.COLO4_26040 Corchorus olitorius HOM05D000120 ORTHO05D009410 6.3e-47 191.8 254 45.7
Manes.11G082300 Manihot esculenta HOM05D000120 ORTHO05D009410 7.2e-43 178.3 251 45.4
Duzib132G0615 Durio zibethinus HOM05D000120 ORTHO05D009410 2.1e-42 176.8 253 42.3
GSVIVG01024178001 Vitis vinifera HOM05D000120 ORTHO05D009410 1.4e-41 174.1 254 42.1
Sabra09G0095200 Salix brachista HOM05D000120 ORTHO05D009410 3.0e-41 172.9 255 43.9
Manes.04G083900 Manihot esculenta HOM05D000120 ORTHO05D009410 3.4e-40 169.5 257 44.0
Potri.009G124000 Populus trichocarpa HOM05D000120 ORTHO05D009410 3.7e-39 166.0 255 45.1
CiPaw.06G128400 Carya illinoinensis HOM05D000120 ORTHO05D009410 4.8e-39 165.6 250 45.6
Ciclev10029808m.g Citrus clementina HOM05D000120 ORTHO05D009410 1.8e-38 163.7 262 43.1
vmacro02052 Vaccinium macrocarpon HOM05D000120 ORTHO05D009410 1.2e-37 161.0 243 40.3
TWI79G0897 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 3.5e-37 159.5 236 42.8
CANSAT11G1664 Cannabis sativa HOM05D000120 ORTHO05D009410 2.3e-36 156.8 253 43.5
Actinidia02243 Actinidia chinensis HOM05D000120 ORTHO05D009410 1.5e-35 154.1 294 37.1
Potri.004G162300 Populus trichocarpa HOM05D000120 ORTHO05D009410 1.9e-35 153.7 250 42.4
QL11p046369 Quercus lobata HOM05D000120 ORTHO05D009410 9.5e-35 151.4 379 32.5
Hma1.2p1_1244F.1_g270010 Hydrangea macrophylla HOM05D000120 ORTHO05D009410 1.6e-34 150.6 262 40.8
TWI31G0702 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 6.1e-34 148.7 236 40.7
Lalb_Chr03g0030591 Lupinus albus HOM05D000120 ORTHO05D009410 8.9e-33 144.8 248 39.1
Duzib052G0028 Durio zibethinus HOM05D000120 ORTHO05D009410 2.2e-31 140.2 258 38.0
Gohir.A12G041200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 4.9e-31 139.0 332 33.4
Oeu055633.1 Olea europaea HOM05D000120 ORTHO05D009410 4.9e-31 139.0 245 38.0
Gorai.008G031900 Gossypium raimondii HOM05D000120 ORTHO05D009410 2.4e-30 136.7 331 31.4
Atru.chr5.3139 Acer truncatum HOM05D000120 ORTHO05D009410 1.6e-29 134.0 231 40.7
TAR376G0786 Trochodendron aralioides HOM05D000120 ORTHO05D009410 5.9e-29 132.1 244 38.9
MSTRG.5421 Avicennia marina HOM05D000120 ORTHO05D009410 7.8e-29 131.7 230 37.8
VMungo1127G0720 Vigna mungo HOM05D000120 ORTHO05D009410 2.3e-28 130.2 257 37.0
arahy.Tifrunner.gnm1.ann1.X3J0BR Arachis hypogaea HOM05D000120 ORTHO05D009410 3.9e-28 129.4 243 36.2
Ca_27169_v3 Cicer arietinum L. HOM05D000120 ORTHO05D009410 2.5e-27 126.7 254 37.0
Phvul.011G156600 Phaseolus vulgaris HOM05D000120 ORTHO05D009410 4.3e-27 125.9 253 35.2
Gohir.D12G031200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 5.6e-27 125.6 201 38.3
Lj3g0001494 Lotus japonicus HOM05D000120 ORTHO05D009410 5.6e-27 125.6 256 35.2
TPR.G31517 Trifolium pratense HOM05D000120 ORTHO05D009410 1.2e-26 124.4 282 35.1
Glyma.06G246300 Glycine max HOM05D000120 ORTHO05D009410 2.1e-26 123.6 286 36.0
PGR042G1442 Punica granatum HOM05D000120 ORTHO05D009410 2.8e-26 123.2 255 35.3
Eucgr.G01727 Eucalyptus grandis HOM05D000120 ORTHO05D009410 6.8e-25 118.6 245 35.5
TAR628G1238 Trochodendron aralioides HOM05D000120 ORTHO05D009410 1.5e-24 117.5 253 34.8
Sc08g0000840 Simmondsia chinensis HOM05D000120 ORTHO05D009410 4.4e-24 115.9 250 38.4
CsaV3_7G000360 Cucumis sativus L. HOM05D000120 ORTHO05D009410 1.7e-23 114.0 249 36.5
Peaxi162Scf00016g10015 Petunia axillaris HOM05D000120 ORTHO05D009410 6.4e-23 112.1 243 34.2
Sed0018675 Sechium edule HOM05D000120 ORTHO05D009410 6.4e-23 112.1 290 31.7
AUR62010396 Chenopodium quinoa HOM05D000120 ORTHO05D009410 8.3e-23 111.7 256 33.6
MELO3C002789.2 Cucumis melo HOM05D000120 ORTHO05D009410 1.9e-22 110.5 247 36.4
Sed0016080 Sechium edule HOM05D000120 ORTHO05D009410 9.2e-22 108.2 292 32.5
ClCG02G004590 Citrullus lanatus HOM05D000120 ORTHO05D009410 3.5e-21 106.3 237 37.6
Sopen01g052500 Solanum pennellii HOM05D000120 ORTHO05D009410 6.0e-21 105.5 247 34.4
AUR62016822 Chenopodium quinoa HOM05D000120 ORTHO05D009410 1.0e-20 104.8 256 32.8
FAN15G0678 Fragaria x ananassa HOM05D000722 ORTHO05D000590 1.0e-20 104.8 124 51.6
PGSC0003DMG400046163 Solanum tuberosum HOM05D000120 ORTHO05D009410 2.3e-20 103.6 248 34.3
Aqoxy5G01485 Aquilegia oxysepala HOM05D000120 ORTHO05D009410 3.9e-20 102.8 249 31.7
Solyc01g110350.2 Solanum lycopersicum HOM05D000120 ORTHO05D009410 3.9e-20 102.8 247 34.0
DCAR_022914 Daucus carota HOM05D000120 ORTHO05D009410 6.6e-20 102.1 246 30.9
Hund00217 Selenicereus undatus HOM05D000120 ORTHO05D000105 1.1e-19 101.3 251 32.7
PSO210G7327 Papaver somniferum HOM05D000120 ORTHO05D009410 4.7e-18 95.9 260 31.9
Nn7g36692 Nelumbo nucifera HOM05D000120 ORTHO05D009410 1.4e-17 94.4 274 29.9
Cpa.g.sc150.20 Carica papaya HOM05D000120 ORTHO05D009410 1.2e-16 91.3 247 33.6
Cc02_g16960 Coffea canephora HOM05D000120 ORTHO05D009410 3.4e-16 89.7 245 35.1
Nitab4.5_0017990g0010 Nicotiana tabacum HOM05D000120 ORTHO05D009410 4.4e-16 89.4 246 30.9
Psat4g137840 Pisum sativum HOM05D000120 ORTHO05D009410 4.9e-15 85.9 263 31.6
Lsat_1_v5_gn_3_44160 Lactuca sativa HOM05D000120 ORTHO05D009410 5.4e-14 82.4 221 33.9
Sabra04G0109000 Salix brachista HOM05D000120 ORTHO05D009410 9.2e-14 81.6 247 28.3
HanXRQChr15g0478301 Helianthus annuus HOM05D000120 ORTHO05D009410 1.2e-13 81.3 217 34.6
SGA_v2.0_scaffold32G13221 Striga asiatica HOM05D000120 ORTHO05D009410 2.1e-13 80.5 125 43.2
ECA240G4650 Erigeron canadensis HOM05D000120 ORTHO05D009410 3.5e-13 79.7 235 29.4
SalBow6G2916 Salvia bowleyana HOM05D000120 ORTHO05D009410 6.0e-13 79.0 278 30.9
CAN.G170.96 Capsicum annuum HOM05D000120 ORTHO05D009410 5.1e-12 75.9 262 27.9
Zm00001eb180650 Zea mays HOM05D000120 ORTHO05D009410 5.1e-12 75.9 235 28.1
Os02g0469000 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D009410 8.6e-12 75.1 233 29.6
unitig_747.g21207 Utricularia gibba HOM05D000120 ORTHO05D009410 3.6e-10 69.7 209 29.7
AT4G38980 Arabidopsis thaliana HOM05D011065 ORTHO05D009410 8.1e-10 68.6 272 29.0
Aa31LG6G16270 Aethionema arabicum HOM05D011065 ORTHO05D009410 3.1e-09 66.6 248 30.6
Migut.B00178 Erythranthe guttata HOM05D000120 ORTHO05D009410 1.2e-08 64.7 235 28.9
BcaB03g12236 Brassica carinata HOM05D011065 ORTHO05D009410 2.0e-08 63.9 253 27.7
Thhalv10027283m.g Eutrema salsugineum HOM05D011065 ORTHO05D009410 9.9e-08 61.6 259 29.3
Sp7g36860 Schrenkiella parvula HOM05D011065 ORTHO05D009410 3.7e-07 59.7 279 28.0
Glyma.12G151000 Glycine max HOM05D000120 ORTHO05D009410 4.9e-07 59.3 195 27.7
Carub.0007s0080 Capsella rubella HOM05D011065 ORTHO05D009410 6.4e-07 58.9 272 27.2
arahy.Tifrunner.gnm1.ann1.T5BQ73 Arachis hypogaea HOM05D000120 ORTHO05D009410 8.3e-07 58.5 76 46.1
BraA08t34348Z Brassica rapa HOM05D011065 ORTHO05D009410 9.2e-06 55.1 252 28.2


User provided reference genes

Program Settings