Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 1.9e-154 549.3 300 100.0
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 1.5e-100 370.2 252 82.1
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 3.9e-88 328.9 300 67.0
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 8.0e-81 304.7 284 65.5
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 3.3e-79 299.3 294 62.9
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 5.7e-79 298.5 287 63.8
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 5.7e-79 298.5 287 63.8
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 2.8e-78 296.2 309 62.8
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 2.7e-76 289.7 306 61.4
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 3.5e-76 289.3 306 61.4
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 5.2e-72 275.4 316 58.2
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.4e-69 267.3 305 59.3
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 2.0e-68 263.5 288 59.4
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 8.5e-67 258.1 310 59.0
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 3.0e-64 249.6 290 58.6
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 4.4e-63 245.7 305 57.7
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 6.3e-62 241.9 272 61.4
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 2.4e-61 240.0 283 59.7
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 9.2e-61 238.0 294 55.1
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 1.6e-60 237.3 305 55.7
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 2.7e-60 236.5 294 52.0
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 7.7e-60 235.0 307 54.4
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.0e-59 234.6 282 57.8
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.3e-59 233.4 293 56.7
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 3.8e-59 232.6 288 55.2
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 6.6e-59 231.9 295 55.6
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 8.6e-59 231.5 305 55.4
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 1.5e-58 230.7 224 62.9
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.9e-58 230.3 243 62.1
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 7.3e-58 228.4 297 55.9
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 2.1e-57 226.9 310 50.6
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 2.1e-57 226.9 260 55.8
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 2.8e-57 226.5 320 52.8
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 3.6e-57 226.1 315 52.4
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 8.0e-57 224.9 296 55.1
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 2.3e-56 223.4 280 55.4
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.0e-56 223.0 303 50.5
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 4.0e-56 222.6 219 61.6
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 1.5e-55 220.7 261 57.5
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 5.7e-55 218.8 261 58.2
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 5.7e-55 218.8 267 55.8
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 5.7e-55 218.8 247 58.3
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 9.8e-55 218.0 271 53.1
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 1.3e-54 217.6 247 57.9
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 1.3e-54 217.6 247 58.3
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 1.1e-53 214.5 267 54.3
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.4e-53 214.2 285 55.4
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 3.2e-53 213.0 292 52.7
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 3.2e-53 213.0 267 53.2
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 7.0e-53 211.8 294 53.7
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 1.6e-52 210.7 258 53.9
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 2.0e-52 210.3 261 54.4
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 3.5e-52 209.5 259 54.4
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 7.8e-52 208.4 267 54.3
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 7.8e-52 208.4 257 54.5
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.3e-51 207.6 263 52.9
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 2.3e-51 206.8 214 59.8
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 3.0e-51 206.5 274 52.9
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 5.0e-51 205.7 218 57.8
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 8.6e-51 204.9 267 53.6
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.9e-50 203.8 284 50.7
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.9e-50 203.8 214 59.3
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 3.3e-50 203.0 168 72.6
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 7.3e-50 201.8 285 50.2
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 1.2e-49 201.1 251 54.2
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.2e-49 201.1 278 49.6
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 1.2e-49 201.1 239 54.0
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 1.6e-49 200.7 285 49.8
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 1.6e-49 200.7 214 58.4
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.6e-49 200.7 269 50.2
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 2.1e-49 200.3 283 48.4
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 2.1e-49 200.3 275 54.5
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 2.8e-49 199.9 276 51.8
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 4.7e-49 199.1 240 55.4
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 4.7e-49 199.1 238 55.9
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 4.7e-49 199.1 214 57.9
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 6.2e-49 198.7 266 50.4
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 6.2e-49 198.7 310 50.0
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 8.0e-49 198.4 238 54.2
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 8.0e-49 198.4 238 54.2
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 8.0e-49 198.4 217 59.4
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 8.0e-49 198.4 279 53.8
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.0e-48 198.0 260 51.9
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.4e-48 197.6 172 70.9
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.4e-48 197.6 148 76.4
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 1.4e-48 197.6 237 54.0
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 1.8e-48 197.2 238 55.5
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 4.0e-48 196.1 284 48.2
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 9.8e-47 191.4 224 56.2
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.7e-46 190.7 235 53.6
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 1.7e-46 190.7 268 51.9
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 2.2e-46 190.3 207 56.0
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.2e-46 190.3 303 44.9
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.9e-46 189.9 264 50.8
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.9e-46 189.9 303 44.9
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 4.9e-46 189.1 285 48.8
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 6.4e-46 188.7 256 52.3
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.1e-45 188.0 226 54.9
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.1e-45 188.0 216 58.3
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 2.4e-45 186.8 374 40.1
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 2.4e-45 186.8 275 48.7
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 5.4e-45 185.7 201 60.2
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.2e-44 184.5 295 47.5
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.6e-44 184.1 284 47.5
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 3.5e-44 183.0 374 40.1
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 6.0e-44 182.2 306 45.4
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 7.8e-44 181.8 221 55.7
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 6.6e-43 178.7 226 54.4
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.5e-42 177.6 279 50.2
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.9e-42 177.2 310 43.9
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 3.3e-42 176.4 284 47.5
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 2.1e-41 173.7 139 74.1
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 2.1e-41 173.7 158 67.7
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.5e-39 167.5 307 41.0
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 5.4e-37 159.1 226 49.1
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 1.6e-36 157.5 223 50.2
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.1e-36 157.1 135 69.6
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 3.5e-36 156.4 146 66.4
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 3.0e-35 153.3 201 49.8
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 5.1e-35 152.5 119 76.5
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 2.5e-34 150.2 199 50.8
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 2.5e-34 150.2 127 71.7
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 1.2e-33 147.9 244 45.1
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 2.8e-33 146.7 144 66.0
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 8.1e-33 145.2 110 79.1
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.5e-31 141.0 216 48.1
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 9.9e-31 138.3 144 59.7
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 8.4e-30 135.2 183 51.9
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 2.4e-29 133.7 97 78.4
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 2.4e-29 133.7 167 52.1
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 7.8e-28 128.6 147 57.8
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 4.3e-26 122.9 118 65.3
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 9.6e-26 121.7 130 56.9
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.2e-20 104.8 103 59.2
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.0e-19 101.7 101 64.4
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.1e-16 91.7 116 56.0
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 9.0e-16 88.6 105 58.1
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 3.4e-15 86.7 200 39.0
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.7e-14 84.3 111 51.4
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.7e-14 84.3 198 36.9
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 2.9e-14 83.6 141 38.3
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 1.2e-12 78.2 88 62.5
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 2.1e-12 77.4 226 31.0
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.5e-12 76.6 61 75.4
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 5.1e-11 72.8 210 31.0
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 4.8e-09 66.2 108 49.1
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 3.1e-08 63.5 49 79.6
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.5e-07 61.2 133 35.3
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 5.8e-07 59.3 46 78.3


User provided reference genes

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