Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1029400 Malus domestica HOM05D000646 ORTHO05D048644 1.3e-28 129.0 65 100.0
Lj4A632T45 Lonicera japonica HOM05D000646 ORTHO05D000607 3.9e-17 90.9 55 80.0
Haze_17504 Corylus avellana HOM05D000646 ORTHO05D000607 1.5e-16 89.0 63 73.0
Actinidia02628 Actinidia chinensis HOM05D000646 ORTHO05D000607 1.9e-16 88.6 63 74.6
TAR376G0560 Trochodendron aralioides HOM05D000646 ORTHO05D000607 2.5e-16 88.2 63 73.0
Hma1.2p1_0129F.1_g060350 Hydrangea macrophylla HOM05D000646 ORTHO05D000607 4.3e-16 87.4 63 69.8
Potri.005G179200 Populus trichocarpa HOM05D000646 ORTHO05D000607 4.3e-16 87.4 63 71.4
Atru.chr13.1501 Acer truncatum HOM05D000646 ORTHO05D000607 5.7e-16 87.0 63 71.4
Glyma.04G248300 Glycine max HOM05D000646 ORTHO05D000607 5.7e-16 87.0 63 71.4
DCAR_010287 Daucus carota HOM05D000646 ORTHO05D000607 9.6e-16 86.3 50 84.0
Glyma.06G114400 Glycine max HOM05D000646 ORTHO05D000607 9.6e-16 86.3 50 84.0
Sabra05G0135600 Salix brachista HOM05D000646 ORTHO05D000607 9.6e-16 86.3 63 68.3
CARHR071010 Cardamine hirsuta HOM05D000646 ORTHO05D000607 2.8e-15 84.7 61 70.5
MBI03_g07926_MAGBIO Magnolia biondii HOM05D000646 ORTHO05D000607 3.7e-15 84.3 63 65.1
MBI03_g38907_MAGBIO Magnolia biondii HOM05D000646 ORTHO05D000607 3.7e-15 84.3 63 65.1
arahy.Tifrunner.gnm1.ann1.20061H Arachis hypogaea HOM05D000646 ORTHO05D000607 4.8e-15 84.0 49 79.6
arahy.Tifrunner.gnm1.ann1.94S7W0 Arachis hypogaea HOM05D000646 ORTHO05D000607 4.8e-15 84.0 49 79.6
EL10Ac1g01036 Beta vulgaris HOM05D000646 ORTHO05D000607 4.8e-15 84.0 63 68.3
Phvul.009G126500 Phaseolus vulgaris HOM05D000646 ORTHO05D000607 4.8e-15 84.0 63 66.7
PGR044G1179 Punica granatum HOM05D000646 ORTHO05D000607 4.8e-15 84.0 50 80.0
VMungo1309G3052 Vigna mungo HOM05D000646 ORTHO05D000607 4.8e-15 84.0 63 66.7
Carub.0002s2438 Capsella rubella HOM05D000646 ORTHO05D000607 6.3e-15 83.6 61 68.9
Duzib116G0615 Durio zibethinus HOM05D000646 ORTHO05D000607 6.3e-15 83.6 63 65.1
AL2G37690 Arabidopsis lyrata HOM05D000646 ORTHO05D000607 8.2e-15 83.2 61 68.9
AT1G77490 Arabidopsis thaliana HOM05D000646 ORTHO05D000607 8.2e-15 83.2 61 68.9
Gohir.A06G045600 Gossypium hirsutum HOM05D000646 ORTHO05D000607 8.2e-15 83.2 62 66.1
PSO170G0062 Papaver somniferum HOM05D000646 ORTHO05D000607 8.2e-15 83.2 63 66.7
HPP92_016111 Vanilla planifolia HOM05D000646 ORTHO05D000607 8.2e-15 83.2 55 70.9
CDE04G1386 Ceratophyllum demersum HOM05D000646 ORTHO05D000607 1.1e-14 82.8 62 62.9
AUR62014318 Chenopodium quinoa HOM05D000646 ORTHO05D000607 1.1e-14 82.8 55 74.5
AUR62019059 Chenopodium quinoa HOM05D000646 ORTHO05D000607 1.1e-14 82.8 55 76.4
ClCG08G005810 Citrullus lanatus HOM05D000646 ORTHO05D000607 1.1e-14 82.8 50 82.0
Aqoxy6G00243 Aquilegia oxysepala HOM05D000646 ORTHO05D000607 1.4e-14 82.4 63 69.8
CANSAT25G0352 Cannabis sativa HOM05D000646 ORTHO05D000607 1.4e-14 82.4 63 66.7
Ciclev10001194m.g Citrus clementina HOM05D000646 ORTHO05D000607 1.4e-14 82.4 55 70.9
Manes.02G165100 Manihot esculenta HOM05D000646 ORTHO05D000607 1.4e-14 82.4 63 66.7
Nn1g08858 Nelumbo nucifera HOM05D000646 ORTHO05D000607 1.4e-14 82.4 63 69.8
CsaV3_6G034310 Cucumis sativus L. HOM05D000646 ORTHO05D000607 2.4e-14 81.6 50 80.0
Gohir.D06G046100 Gossypium hirsutum HOM05D000646 ORTHO05D000607 2.4e-14 81.6 62 64.5
COL.COLO4_24716 Corchorus olitorius HOM05D000646 ORTHO05D000607 3.1e-14 81.3 49 77.6
SEGI_35227 Sequoiadendron giganteum HOM05D000646 ORTHO05D000607 3.1e-14 81.3 53 71.7
Solyc11g018550.4 Solanum lycopersicum HOM05D000646 ORTHO05D000607 3.1e-14 81.3 63 66.7
Sopen11g009490 Solanum pennellii HOM05D000646 ORTHO05D000607 3.1e-14 81.3 63 66.7
PGSC0003DMG400000894 Solanum tuberosum HOM05D000646 ORTHO05D000607 3.1e-14 81.3 63 66.7
Eucgr.F04344 Eucalyptus grandis HOM05D000646 ORTHO05D000607 4.1e-14 80.9 63 68.3
unitig_747.g21495 Utricularia gibba HOM05D000646 ORTHO05D000607 4.1e-14 80.9 63 66.7
CDE07G1143 Ceratophyllum demersum HOM05D000646 ORTHO05D000607 5.3e-14 80.5 62 61.3
Sed0001909 Sechium edule HOM05D000646 ORTHO05D000607 5.3e-14 80.5 50 78.0
Thecc.08G128000 Theobroma cacao HOM05D000646 ORTHO05D000607 5.3e-14 80.5 62 62.9
TWI34G1742 Tripterygium wilfordii HOM05D000646 ORTHO05D000607 5.3e-14 80.5 63 66.7
CAN.G2.25 Capsicum annuum HOM05D000646 ORTHO05D000607 6.9e-14 80.1 63 63.5
Gorai.010G051400 Gossypium raimondii HOM05D000646 ORTHO05D000607 6.9e-14 80.1 62 64.5
Medtr3g088160 Medicago truncatula HOM05D000646 ORTHO05D000607 6.9e-14 80.1 63 66.7
Os02g0553200 Oryza sativa ssp. japonica HOM05D000646 ORTHO05D000607 6.9e-14 80.1 63 66.7
ATR0584G151 Amborella trichopoda HOM05D000646 ORTHO05D000607 9.0e-14 79.7 53 71.7
Nitab4.5_0001996g0010 Nicotiana tabacum HOM05D000646 ORTHO05D000607 9.0e-14 79.7 63 66.7
TPR.G19293 Trifolium pratense HOM05D000646 ORTHO05D000607 9.0e-14 79.7 63 68.3
Ah.05g170970 Amaranthus hybridus HOM05D000646 ORTHO05D000607 2.0e-13 78.6 61 65.6
Migut.C01118 Erythranthe guttata HOM05D000646 ORTHO05D000607 2.0e-13 78.6 55 70.9
Nitab4.5_0005010g0010 Nicotiana tabacum HOM05D000646 ORTHO05D000607 2.0e-13 78.6 63 65.1
SMO347G0461 Selaginella moellendorffii HOM05D000646 ORTHO05D000607 2.0e-13 78.6 61 67.2
Hund26798 Selenicereus undatus HOM05D000646 ORTHO05D000607 2.6e-13 78.2 54 70.4
BcaB03g15949 Brassica carinata HOM05D000646 ORTHO05D000607 4.5e-13 77.4 62 62.9
BcaC08g47608 Brassica carinata HOM05D000646 ORTHO05D000607 4.5e-13 77.4 62 62.9
A07p42940 Brassica napus HOM05D000646 ORTHO05D000607 4.5e-13 77.4 62 62.9
C06p51560 Brassica napus HOM05D000646 ORTHO05D000607 4.5e-13 77.4 62 62.9
BolC6t40176H Brassica oleracea HOM05D000646 ORTHO05D000607 4.5e-13 77.4 62 62.9
BraA07t31815Z Brassica rapa HOM05D000646 ORTHO05D000607 4.5e-13 77.4 62 62.9
Peaxi162Scf00051g00126 Petunia axillaris HOM05D000646 ORTHO05D000607 4.5e-13 77.4 61 63.9
SalBow7G0132 Salvia bowleyana HOM05D000646 ORTHO05D000607 4.5e-13 77.4 59 67.8
SGA_v2.0_scaffold52G18957 Striga asiatica HOM05D000646 ORTHO05D000607 4.5e-13 77.4 63 63.5
Zm00001eb243590 Zea mays HOM05D000646 ORTHO05D000607 4.5e-13 77.4 50 74.0
Mapoly0030s0090 Marchantia polymorpha HOM05D000646 ORTHO05D000607 5.9e-13 77.0 58 63.8
Sp5g32650 Schrenkiella parvula HOM05D000646 ORTHO05D000607 5.9e-13 77.0 62 62.9
Dinv14633 Davidia involucrata HOM05D000646 ORTHO05D000607 1.0e-12 76.3 45 84.4
Thhalv10018581m.g Eutrema salsugineum HOM05D000646 ORTHO05D000607 1.0e-12 76.3 62 61.3
BolC2t07854H Brassica oleracea HOM05D000646 ORTHO05D000607 1.3e-12 75.9 62 62.9
C02p17400 Brassica napus HOM05D000646 ORTHO05D000607 2.9e-12 74.7 62 62.9
MSTRG.25375 Avicennia marina HOM05D000646 ORTHO05D000607 3.8e-12 74.3 63 61.9
Lj1g0016464 Lotus japonicus HOM05D000646 ORTHO05D000607 8.4e-12 73.2 57 66.7
Rhsim06G0102100 Rhododendron simsii HOM05D000646 ORTHO05D000607 8.4e-12 73.2 59 62.7
Aa31LG4G7500 Aethionema arabicum HOM05D000646 ORTHO05D000607 1.1e-11 72.8 54 64.8
THA.LOC104813669 Tarenaya hassleriana HOM05D000646 ORTHO05D000607 1.9e-11 72.0 62 56.5
AagrBONN_evm.TU.Sc2ySwM_117.3291 Anthoceros agrestis HOM05D000646 ORTHO05D000607 9.3e-11 69.7 50 70.0
Pp3c1_40650 Physcomitrium patens HOM05D000646 ORTHO05D000607 2.7e-10 68.2 48 70.8
MCO16G574 Micromonas commoda HOM05D000646 ORTHO05D048644 1.8e-06 55.5 52 48.1


User provided reference genes

Program Settings