Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1026900 Malus domestica HOM05D005882 ORTHO05D007387 1.3e-57 226.1 111 100.0
MD15G1178700 Malus domestica HOM05D005882 ORTHO05D007387 1.5e-45 186.0 108 82.4
RcHm_v2.0_Chr2g0089501 Rosa chinensis HOM05D005882 ORTHO05D007387 4.5e-37 157.9 114 73.7
FvH4_1g04030 Fragaria vesca HOM05D005882 ORTHO05D007387 9.9e-37 156.8 114 72.8
FAN19G1300 Fragaria x ananassa HOM05D005882 ORTHO05D007387 9.9e-37 156.8 114 72.8
Prupe.7G236600 Prunus persica HOM05D005882 ORTHO05D007387 1.3e-36 156.4 106 77.4
FAN26G2120 Fragaria x ananassa HOM05D000145 ORTHO05D007387 1.7e-36 156.0 114 72.8
FAN28G2467 Fragaria x ananassa HOM05D000145 ORTHO05D007387 1.7e-36 156.0 114 72.8
FAN23G2815 Fragaria x ananassa HOM05D000145 ORTHO05D007387 1.4e-35 152.9 114 71.9
CSS0039949 Camellia sinensis var. sinensis HOM05D005882 ORTHO05D007387 4.9e-28 127.9 112 62.5
Haze_25647 Corylus avellana HOM05D005882 ORTHO05D007387 6.4e-28 127.5 112 62.5
MD00G1025900 Malus domestica HOM05D005882 ORTHO05D007387 3.2e-27 125.2 108 63.0
Haze_25642 Corylus avellana HOM05D005882 ORTHO05D007387 4.2e-27 124.8 112 61.6
Cfa003320 Carpinus fangiana HOM05D005882 ORTHO05D007387 2.1e-26 122.5 115 60.0
Atru.chr7.1254 Acer truncatum HOM05D005882 ORTHO05D007387 3.5e-26 121.7 113 61.9
Actinidia20308 Actinidia chinensis HOM05D005882 ORTHO05D007387 1.8e-25 119.4 111 57.7
QL02p087039 Quercus lobata HOM05D005882 ORTHO05D007387 3.0e-25 118.6 114 57.9
Glyma.06G214700 Glycine max HOM05D005882 ORTHO05D007387 3.9e-25 118.2 111 56.8
CANSAT56G3469 Cannabis sativa HOM05D005882 ORTHO05D007387 1.9e-24 115.9 108 57.4
CiPaw.03G238600 Carya illinoinensis HOM05D005882 ORTHO05D007387 4.3e-24 114.8 122 50.8
Eucgr.C01104 Eucalyptus grandis HOM05D005882 ORTHO05D007387 5.6e-24 114.4 112 52.7
Thecc.09G119200 Theobroma cacao HOM05D005882 ORTHO05D007387 9.6e-24 113.6 117 58.1
Cpa.g.sc75.80 Carica papaya HOM05D005882 ORTHO05D007387 8.2e-23 110.5 109 56.0
Dinv41550 Davidia involucrata HOM05D005882 ORTHO05D007387 8.2e-23 110.5 112 57.1
Sed0000713 Sechium edule HOM05D005882 ORTHO05D007387 1.8e-22 109.4 71 71.8
Ciclev10008577m.g Citrus clementina HOM05D005882 ORTHO05D007387 2.4e-22 109.0 105 60.0
ClCG06G010600 Citrullus lanatus HOM05D005882 ORTHO05D007387 4.0e-22 108.2 113 54.9
Duzib168G0824 Durio zibethinus HOM05D005882 ORTHO05D007387 5.3e-22 107.8 117 55.6
TPR.G7510 Trifolium pratense HOM05D005882 ORTHO05D007387 6.9e-22 107.5 110 52.7
vmacro23193 Vaccinium macrocarpon HOM05D005882 ORTHO05D007387 3.4e-21 105.1 95 61.1
COL.COLO4_34981 Corchorus olitorius HOM05D005882 ORTHO05D007387 1.0e-20 103.6 116 53.4
MELO3C025286.2 Cucumis melo HOM05D005882 ORTHO05D007387 1.0e-20 103.6 85 61.2
TAR636G3140 Trochodendron aralioides HOM05D001629 ORTHO05D003842 1.0e-20 103.6 94 58.5
Lj7C636G5 Lonicera japonica HOM05D005882 ORTHO05D003491 1.7e-20 102.8 114 50.9
Nn2g11903 Nelumbo nucifera HOM05D005882 ORTHO05D007387 2.2e-20 102.4 109 53.2
TWI32G0125 Tripterygium wilfordii HOM05D005882 ORTHO05D007387 8.4e-20 100.5 111 53.2
Lj1g0016893 Lotus japonicus HOM05D005882 ORTHO05D007387 1.1e-19 100.1 109 52.3
Rhsim08G0067200 Rhododendron simsii HOM05D005882 ORTHO05D007387 1.1e-19 100.1 115 58.3
Ah.14g081090 Amaranthus hybridus HOM05D005882 ORTHO05D007387 1.4e-19 99.8 99 54.5
VMungo1309G0159 Vigna mungo HOM05D005882 ORTHO05D007387 1.4e-19 99.8 113 51.3
arahy.Tifrunner.gnm1.ann1.G1MC5D Arachis hypogaea HOM05D005882 ORTHO05D007387 2.5e-19 99.0 93 53.8
arahy.Tifrunner.gnm1.ann1.WI060A Arachis hypogaea HOM05D005882 ORTHO05D007387 2.5e-19 99.0 93 53.8
Hund00886 Selenicereus undatus HOM05D005882 ORTHO05D007387 3.2e-19 98.6 112 52.7
Aqoxy7G01989 Aquilegia oxysepala HOM05D005882 ORTHO05D007387 4.2e-19 98.2 108 51.9
Gohir.D05G020900 Gossypium hirsutum HOM05D005882 ORTHO05D007387 5.5e-19 97.8 121 47.9
Gorai.009G021100 Gossypium raimondii HOM05D005882 ORTHO05D007387 5.5e-19 97.8 121 47.9
Manes.06G059700 Manihot esculenta HOM05D005882 ORTHO05D007387 5.5e-19 97.8 110 49.1
Phvul.009G199300 Phaseolus vulgaris HOM05D005882 ORTHO05D007387 5.5e-19 97.8 113 50.4
CsaV3_1G031090 Cucumis sativus L. HOM05D005882 ORTHO05D007387 7.1e-19 97.4 61 70.5
DCAR_017850 Daucus carota HOM05D005882 ORTHO05D007387 1.2e-18 96.7 110 48.2
Medtr2g054130 Medicago truncatula HOM05D005882 ORTHO05D007387 2.1e-18 95.9 104 45.2
Medtr2g055010 Medicago truncatula HOM05D005882 ORTHO05D007387 2.1e-18 95.9 104 45.2
QL02p087048 Quercus lobata HOM05D005882 ORTHO05D007387 2.1e-18 95.9 110 54.5
Hma1.2p1_0018F.1_g012920 Hydrangea macrophylla HOM05D005882 ORTHO05D007387 7.9e-18 94.0 118 50.8
Psat1g026560 Pisum sativum HOM05D005882 ORTHO05D007387 7.9e-18 94.0 112 44.6
Potri.018G073501 Populus trichocarpa HOM05D005882 ORTHO05D007387 7.9e-18 94.0 111 51.4
Cc06_g09080 Coffea canephora HOM05D005882 ORTHO05D007387 1.3e-17 93.2 60 71.7
Lsat_1_v5_gn_5_97440 Lactuca sativa HOM05D005882 ORTHO05D007387 2.3e-17 92.4 109 50.5
EL10Ac8g18577 Beta vulgaris HOM05D005882 ORTHO05D007387 3.0e-17 92.0 106 49.1
Lalb_Chr08g0234911 Lupinus albus HOM05D005882 ORTHO05D007387 3.9e-17 91.7 114 45.6
Nitab4.5_0003235g0060 Nicotiana tabacum HOM05D005882 ORTHO05D007387 3.9e-17 91.7 112 47.3
Sabra18G0062300 Salix brachista HOM05D005882 ORTHO05D007387 5.1e-17 91.3 111 47.7
BolC7t44391H Brassica oleracea HOM05D005882 ORTHO05D007387 6.7e-17 90.9 104 46.2
AUR62033437 Chenopodium quinoa HOM05D005882 ORTHO05D007387 8.7e-17 90.5 107 50.5
C07p38700 Brassica napus HOM05D005882 ORTHO05D007387 1.1e-16 90.1 104 46.2
Gohir.A05G019800 Gossypium hirsutum HOM05D005882 ORTHO05D007387 1.1e-16 90.1 112 49.1
A06p39580 Brassica napus HOM05D005882 ORTHO05D007387 1.5e-16 89.7 104 47.1
BraA06t26872Z Brassica rapa HOM05D005882 ORTHO05D007387 1.5e-16 89.7 104 47.1
Sc08g0006900 Simmondsia chinensis HOM05D005882 ORTHO05D007387 1.9e-16 89.4 119 47.1
Sp2g18290 Schrenkiella parvula HOM05D005882 ORTHO05D007387 4.3e-16 88.2 105 49.5
SalBow1G1298 Salvia bowleyana HOM05D005882 ORTHO05D007387 5.7e-16 87.8 95 50.5
AUR62011058 Chenopodium quinoa HOM05D005882 ORTHO05D007387 9.7e-16 87.0 107 48.6
Nitab4.5_0006991g0050 Nicotiana tabacum HOM05D005882 ORTHO05D007387 1.6e-15 86.3 110 45.5
Migut.J01232 Erythranthe guttata HOM05D005882 ORTHO05D007387 2.8e-15 85.5 76 60.5
PGR142G3773 Punica granatum HOM05D005882 ORTHO05D007387 4.8e-15 84.7 100 50.0
Thhalv10004416m.g Eutrema salsugineum HOM05D005882 ORTHO05D007387 8.2e-15 84.0 108 44.4
AL6G31690 Arabidopsis lyrata HOM05D005882 ORTHO05D007387 1.8e-14 82.8 102 47.1
Rhsim08G0067400 Rhododendron simsii HOM05D005882 ORTHO05D007387 1.8e-14 82.8 53 75.5
PGSC0003DMG400001057 Solanum tuberosum HOM05D005882 ORTHO05D007387 1.8e-14 82.8 110 47.3
MSTRG.6078 Avicennia marina HOM05D005882 ORTHO05D007387 2.4e-14 82.4 83 55.4
CAN.G713.5 Capsicum annuum HOM05D005882 ORTHO05D007387 5.3e-14 81.3 111 43.2
Solyc12g006805.1 Solanum lycopersicum HOM05D005882 ORTHO05D007387 9.0e-14 80.5 110 45.5
THA.LOC104811045 Tarenaya hassleriana HOM05D005882 ORTHO05D007387 9.0e-14 80.5 110 47.3
AT5G20140 Arabidopsis thaliana HOM05D005882 ORTHO05D007387 1.2e-13 80.1 103 44.7
Carub.0006s1852 Capsella rubella HOM05D005882 ORTHO05D007387 1.2e-13 80.1 100 44.0
Sopen12g002780 Solanum pennellii HOM05D005882 ORTHO05D007387 1.2e-13 80.1 110 45.5
HanXRQChr10g0316701 Helianthus annuus HOM05D005882 ORTHO05D007387 2.6e-13 79.0 109 43.1
Ca_28117_v3 Cicer arietinum L. HOM05D005882 ORTHO05D007387 3.4e-13 78.6 97 47.4
Peaxi162Scf00170g00322 Petunia axillaris HOM05D005882 ORTHO05D007387 3.4e-13 78.6 58 60.3
CARHR192690 Cardamine hirsuta HOM05D005882 ORTHO05D007387 4.5e-13 78.2 100 44.0
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 7.6e-13 77.4 95 42.1
ClCG06G010680 Citrullus lanatus HOM05D005882 ORTHO05D007387 5.0e-12 74.7 66 54.5
MELO3C029668.2 Cucumis melo HOM05D005882 ORTHO05D007387 5.5e-11 71.2 100 40.0
SGA_v2.0_scaffold114G31996 Striga asiatica HOM05D005882 ORTHO05D007387 7.2e-11 70.9 99 50.5
unitig_21.g20470 Utricularia gibba HOM05D005882 ORTHO05D007387 1.2e-10 70.1 71 53.5
Sed0002298 Sechium edule HOM05D005882 ORTHO05D007387 6.1e-10 67.8 49 61.2
PSO017G1905 Papaver somniferum HOM05D005882 ORTHO05D007387 1.0e-09 67.0 70 50.0
PSO170G5466 Papaver somniferum HOM05D005882 ORTHO05D007387 1.8e-09 66.2 108 39.8
PSO170G6086 Papaver somniferum HOM05D005882 ORTHO05D007387 5.1e-09 64.7 53 60.4
GSVIVG01015471001 Vitis vinifera HOM05D005882 ORTHO05D007387 6.7e-09 64.3 39 66.7
CsaV3_1G031110 Cucumis sativus L. HOM05D005882 ORTHO05D007387 8.8e-09 63.9 46 58.7
SMO356G0465 Selaginella moellendorffii HOM05D005882 ORTHO05D007387 7.4e-08 60.8 40 65.0
Nn8g39344 Nelumbo nucifera HOM05D005882 ORTHO05D007387 1.7e-07 59.7 59 45.8
ATR0026G035 Amborella trichopoda HOM05D005882 ORTHO05D007387 4.8e-07 58.2 53 47.2
Os06g0597900 Oryza sativa ssp. japonica HOM05D005882 ORTHO05D007387 8.2e-07 57.4 40 57.5
Zm00001eb385860 Zea mays HOM05D005882 ORTHO05D007387 8.2e-07 57.4 43 58.1


User provided reference genes

Program Settings