Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1025900 Malus domestica HOM05D005882 ORTHO05D007387 4.2e-150 534.6 264 100.0
MD15G1178700 Malus domestica HOM05D005882 ORTHO05D007387 3.0e-84 315.8 321 57.6
Prupe.7G236600 Prunus persica HOM05D005882 ORTHO05D007387 1.6e-77 293.5 318 55.7
FvH4_1g04030 Fragaria vesca HOM05D005882 ORTHO05D007387 4.7e-77 292.0 326 54.6
FAN19G1300 Fragaria x ananassa HOM05D005882 ORTHO05D007387 4.7e-77 292.0 326 54.6
FAN26G2120 Fragaria x ananassa HOM05D000145 ORTHO05D007387 8.0e-77 291.2 326 54.6
RcHm_v2.0_Chr2g0089501 Rosa chinensis HOM05D005882 ORTHO05D007387 1.8e-76 290.0 326 54.9
FAN28G2467 Fragaria x ananassa HOM05D000145 ORTHO05D007387 3.0e-76 289.3 326 54.3
FAN23G2815 Fragaria x ananassa HOM05D000145 ORTHO05D007387 6.8e-76 288.1 326 54.3
Haze_25642 Corylus avellana HOM05D005882 ORTHO05D007387 6.6e-63 245.0 323 48.3
Haze_25647 Corylus avellana HOM05D005882 ORTHO05D007387 8.6e-63 244.6 323 48.3
Cfa003320 Carpinus fangiana HOM05D005882 ORTHO05D007387 2.3e-60 236.5 323 46.4
Atru.chr7.1254 Acer truncatum HOM05D005882 ORTHO05D007387 1.2e-59 234.2 326 46.6
Ciclev10008577m.g Citrus clementina HOM05D005882 ORTHO05D007387 1.5e-59 233.8 326 46.0
CANSAT56G3469 Cannabis sativa HOM05D005882 ORTHO05D007387 5.8e-59 231.9 320 46.2
QL02p087039 Quercus lobata HOM05D005882 ORTHO05D007387 7.5e-59 231.5 327 46.2
TWI32G0125 Tripterygium wilfordii HOM05D005882 ORTHO05D007387 7.5e-59 231.5 321 47.4
Thhalv10004416m.g Eutrema salsugineum HOM05D005882 ORTHO05D007387 2.4e-57 226.5 307 45.0
Gohir.D05G020900 Gossypium hirsutum HOM05D005882 ORTHO05D007387 3.2e-57 226.1 327 43.7
Gorai.009G021100 Gossypium raimondii HOM05D005882 ORTHO05D007387 3.2e-57 226.1 327 43.7
Ah.14g081090 Amaranthus hybridus HOM05D005882 ORTHO05D007387 7.1e-57 224.9 319 44.5
Duzib168G0824 Durio zibethinus HOM05D005882 ORTHO05D007387 1.2e-56 224.2 327 44.6
CiPaw.03G238600 Carya illinoinensis HOM05D005882 ORTHO05D007387 2.7e-56 223.0 330 45.2
Cpa.g.sc75.80 Carica papaya HOM05D005882 ORTHO05D007387 4.6e-56 222.2 333 45.0
Thecc.09G119200 Theobroma cacao HOM05D005882 ORTHO05D007387 6.0e-56 221.9 319 45.1
Manes.06G059700 Manihot esculenta HOM05D005882 ORTHO05D007387 1.0e-55 221.1 324 43.5
CSS0039949 Camellia sinensis var. sinensis HOM05D005882 ORTHO05D007387 2.3e-55 219.9 325 44.0
arahy.Tifrunner.gnm1.ann1.G1MC5D Arachis hypogaea HOM05D005882 ORTHO05D007387 3.0e-55 219.5 307 45.0
AT5G20140 Arabidopsis thaliana HOM05D005882 ORTHO05D007387 3.9e-55 219.2 312 44.2
arahy.Tifrunner.gnm1.ann1.WI060A Arachis hypogaea HOM05D005882 ORTHO05D007387 3.9e-55 219.2 307 45.0
AUR62033437 Chenopodium quinoa HOM05D005882 ORTHO05D007387 5.1e-55 218.8 320 45.0
COL.COLO4_34981 Corchorus olitorius HOM05D005882 ORTHO05D007387 5.1e-55 218.8 329 43.5
Hma1.2p1_0018F.1_g012920 Hydrangea macrophylla HOM05D005882 ORTHO05D007387 8.6e-55 218.0 331 44.1
TAR636G3140 Trochodendron aralioides HOM05D001629 ORTHO05D003842 8.6e-55 218.0 307 44.6
Sp2g18290 Schrenkiella parvula HOM05D005882 ORTHO05D007387 1.1e-54 217.6 310 43.9
QL02p087048 Quercus lobata HOM05D005882 ORTHO05D007387 2.5e-54 216.5 319 44.8
Nn2g11903 Nelumbo nucifera HOM05D005882 ORTHO05D007387 3.3e-54 216.1 325 44.3
Gohir.A05G019800 Gossypium hirsutum HOM05D005882 ORTHO05D007387 5.6e-54 215.3 328 42.1
Eucgr.C01104 Eucalyptus grandis HOM05D005882 ORTHO05D007387 7.3e-54 214.9 325 43.4
Lj1g0016893 Lotus japonicus HOM05D005882 ORTHO05D007387 1.6e-53 213.8 322 43.2
AUR62011058 Chenopodium quinoa HOM05D005882 ORTHO05D007387 2.8e-53 213.0 320 44.4
Dinv41550 Davidia involucrata HOM05D005882 ORTHO05D007387 2.8e-53 213.0 325 41.8
VMungo1309G0159 Vigna mungo HOM05D005882 ORTHO05D007387 2.8e-53 213.0 324 42.3
A06p39580 Brassica napus HOM05D005882 ORTHO05D007387 3.6e-53 212.6 315 43.8
BraA06t26872Z Brassica rapa HOM05D005882 ORTHO05D007387 3.6e-53 212.6 315 43.5
SalBow1G1298 Salvia bowleyana HOM05D005882 ORTHO05D007387 3.6e-53 212.6 307 43.0
CARHR192690 Cardamine hirsuta HOM05D005882 ORTHO05D007387 4.7e-53 212.2 307 43.6
Potri.018G073501 Populus trichocarpa HOM05D005882 ORTHO05D007387 4.7e-53 212.2 315 44.8
ClCG06G010600 Citrullus lanatus HOM05D005882 ORTHO05D007387 6.2e-53 211.8 326 42.3
Hund00886 Selenicereus undatus HOM05D005882 ORTHO05D007387 8.1e-53 211.5 323 41.5
C07p38700 Brassica napus HOM05D005882 ORTHO05D007387 1.1e-52 211.1 315 42.9
BolC7t44391H Brassica oleracea HOM05D005882 ORTHO05D007387 1.1e-52 211.1 315 42.9
DCAR_017850 Daucus carota HOM05D005882 ORTHO05D007387 1.1e-52 211.1 313 44.4
Glyma.06G214700 Glycine max HOM05D005882 ORTHO05D007387 1.1e-52 211.1 324 43.2
Sabra18G0062300 Salix brachista HOM05D005882 ORTHO05D007387 1.1e-52 211.1 316 44.9
TPR.G7510 Trifolium pratense HOM05D005882 ORTHO05D007387 1.1e-52 211.1 323 43.0
Lalb_Chr08g0234911 Lupinus albus HOM05D005882 ORTHO05D007387 3.1e-52 209.5 327 42.5
Rhsim08G0067200 Rhododendron simsii HOM05D005882 ORTHO05D007387 5.2e-52 208.8 325 42.8
AL6G31690 Arabidopsis lyrata HOM05D005882 ORTHO05D007387 6.8e-52 208.4 317 42.3
Medtr2g054130 Medicago truncatula HOM05D005882 ORTHO05D007387 6.8e-52 208.4 317 41.3
Medtr2g055010 Medicago truncatula HOM05D005882 ORTHO05D007387 6.8e-52 208.4 317 41.3
Phvul.009G199300 Phaseolus vulgaris HOM05D005882 ORTHO05D007387 6.8e-52 208.4 325 41.2
Sed0000713 Sechium edule HOM05D005882 ORTHO05D007387 1.5e-51 207.2 284 43.3
Rhsim08G0067400 Rhododendron simsii HOM05D005882 ORTHO05D007387 3.4e-51 206.1 235 51.9
GSVIVG01015471001 Vitis vinifera HOM05D005882 ORTHO05D007387 3.4e-51 206.1 233 49.8
Psat1g026560 Pisum sativum HOM05D005882 ORTHO05D007387 7.6e-51 204.9 328 40.9
THA.LOC104811045 Tarenaya hassleriana HOM05D005882 ORTHO05D007387 7.6e-51 204.9 321 42.1
MELO3C025286.2 Cucumis melo HOM05D005882 ORTHO05D007387 9.9e-51 204.5 298 43.3
Lj7C636G5 Lonicera japonica HOM05D005882 ORTHO05D003491 9.9e-51 204.5 327 42.2
CAN.G713.5 Capsicum annuum HOM05D005882 ORTHO05D007387 1.3e-50 204.1 326 42.0
Aqoxy7G01989 Aquilegia oxysepala HOM05D005882 ORTHO05D007387 3.7e-50 202.6 321 41.7
Cc06_g09080 Coffea canephora HOM05D005882 ORTHO05D007387 3.7e-50 202.6 233 48.5
SGA_v2.0_scaffold114G31996 Striga asiatica HOM05D005882 ORTHO05D007387 8.4e-50 201.4 251 47.8
CsaV3_1G031090 Cucumis sativus L. HOM05D005882 ORTHO05D007387 1.1e-49 201.1 316 41.8
Migut.J01232 Erythranthe guttata HOM05D005882 ORTHO05D007387 1.4e-49 200.7 233 49.8
HanXRQChr10g0316701 Helianthus annuus HOM05D005882 ORTHO05D007387 1.4e-49 200.7 233 49.8
Carub.0006s1852 Capsella rubella HOM05D005882 ORTHO05D007387 1.9e-49 200.3 308 43.2
MSTRG.6078 Avicennia marina HOM05D005882 ORTHO05D007387 4.1e-49 199.1 233 48.5
Peaxi162Scf00170g00322 Petunia axillaris HOM05D005882 ORTHO05D007387 4.1e-49 199.1 258 47.3
PGSC0003DMG400001057 Solanum tuberosum HOM05D005882 ORTHO05D007387 4.1e-49 199.1 323 41.5
Solyc12g006805.1 Solanum lycopersicum HOM05D005882 ORTHO05D007387 9.2e-49 198.0 323 41.2
Sopen12g002780 Solanum pennellii HOM05D005882 ORTHO05D007387 2.7e-48 196.4 323 40.9
EL10Ac8g18577 Beta vulgaris HOM05D005882 ORTHO05D007387 3.5e-48 196.1 319 41.7
Os06g0597900 Oryza sativa ssp. japonica HOM05D005882 ORTHO05D007387 1.7e-47 193.7 233 47.2
Sc08g0006900 Simmondsia chinensis HOM05D005882 ORTHO05D007387 8.6e-47 191.4 331 39.6
PSO170G5466 Papaver somniferum HOM05D005882 ORTHO05D007387 7.3e-46 188.3 312 41.0
unitig_21.g20470 Utricularia gibba HOM05D005882 ORTHO05D007387 1.6e-45 187.2 233 46.4
PSO017G1905 Papaver somniferum HOM05D005882 ORTHO05D007387 2.1e-45 186.8 233 46.8
Zm00001eb385860 Zea mays HOM05D005882 ORTHO05D007387 2.1e-45 186.8 233 45.9
CDE04G0347 Ceratophyllum demersum HOM05D005882 ORTHO05D007387 8.1e-45 184.9 227 47.6
PGR142G3773 Punica granatum HOM05D005882 ORTHO05D007387 1.1e-44 184.5 205 51.7
vmacro23193 Vaccinium macrocarpon HOM05D005882 ORTHO05D007387 1.1e-44 184.5 363 35.8
Nitab4.5_0003235g0060 Nicotiana tabacum HOM05D005882 ORTHO05D007387 1.4e-44 184.1 297 43.4
Actinidia20308 Actinidia chinensis HOM05D005882 ORTHO05D007387 4.4e-43 179.1 261 44.8
MD00G1026800 Malus domestica HOM05D005882 ORTHO05D007387 1.9e-38 163.7 122 69.7
Nitab4.5_0006991g0050 Nicotiana tabacum HOM05D005882 ORTHO05D007387 2.5e-38 163.3 295 40.7
ATR0026G035 Amborella trichopoda HOM05D005882 ORTHO05D007387 7.3e-38 161.8 211 46.9
ClCG06G010680 Citrullus lanatus HOM05D005882 ORTHO05D007387 7.3e-38 161.8 170 50.0
Lsat_1_v5_gn_5_97440 Lactuca sativa HOM05D005882 ORTHO05D007387 3.6e-37 159.5 234 44.0
SEGI_03752 Sequoiadendron giganteum HOM05D005882 ORTHO05D007387 1.1e-36 157.9 181 47.0
Ca_28117_v3 Cicer arietinum L. HOM05D005882 ORTHO05D007387 2.4e-36 156.8 300 39.0
Pp3c4_1490 Physcomitrium patens HOM05D005882 ORTHO05D007387 5.8e-35 152.1 222 39.6
ECA234G4294 Erigeron canadensis HOM05D003057 ORTHO05D003904 1.3e-34 151.0 205 44.4
HanXRQChr10g0316681 Helianthus annuus HOM05D005882 ORTHO05D007387 4.9e-34 149.1 201 45.3
MELO3C029668.2 Cucumis melo HOM05D005882 ORTHO05D007387 5.4e-33 145.6 167 46.1
CsaV3_1G031110 Cucumis sativus L. HOM05D005882 ORTHO05D007387 2.1e-32 143.7 170 45.9
Oeu055933.1 Olea europaea HOM05D005882 ORTHO05D007387 4.6e-32 142.5 179 46.9
Mapoly0088s0023 Marchantia polymorpha HOM05D005882 ORTHO05D007387 7.9e-32 141.7 217 39.6
Aa31LG4G12580 Aethionema arabicum HOM05D005882 ORTHO05D007387 2.3e-31 140.2 174 46.0
SMO356G0465 Selaginella moellendorffii HOM05D005882 ORTHO05D007387 3.0e-31 139.8 226 38.5
AUR62043908 Chenopodium quinoa HOM05D005882 ORTHO05D007387 6.6e-31 138.7 199 40.7
AagrBONN_evm.TU.Sc2ySwM_344.1814 Anthoceros agrestis HOM05D005882 ORTHO05D007387 9.6e-30 134.8 229 34.1
HanXRQChr16g0511261 Helianthus annuus HOM05D005882 ORTHO05D007387 1.8e-28 130.6 182 45.1
PSO170G6086 Papaver somniferum HOM05D005882 ORTHO05D007387 2.6e-27 126.7 170 41.2
MD00G1026900 Malus domestica HOM05D005882 ORTHO05D007387 1.3e-26 124.4 108 63.0
vmacro20639 Vaccinium macrocarpon HOM05D005882 ORTHO05D007387 1.3e-26 124.4 304 31.2
AUR62044155 Chenopodium quinoa HOM05D005882 ORTHO05D007387 5.6e-22 109.0 193 36.8
Cre06.g304400 Chlamydomonas reinhardtii HOM05D005882 ORTHO05D007387 2.8e-21 106.7 249 31.7
MCO05G652 Micromonas commoda HOM05D005882 ORTHO05D007387 5.8e-19 99.0 172 37.8
CBR_g37636 Chara braunii HOM05D005882 ORTHO05D007387 7.6e-19 98.6 171 32.7
DCAR_017851 Daucus carota HOM05D005882 ORTHO05D007387 1.4e-17 94.4 115 44.3
vmacro23194 Vaccinium macrocarpon HOM05D005882 ORTHO05D007387 9.3e-17 91.7 120 45.0
Oeu058585.1 Olea europaea HOM05D005882 ORTHO05D007387 1.6e-16 90.9 187 36.9
Cre16.g666550 Chlamydomonas reinhardtii HOM05D005882 ORTHO05D007387 1.3e-13 81.3 235 27.2
vmacro20689 Vaccinium macrocarpon HOM05D005882 ORTHO05D007387 3.7e-13 79.7 102 47.1
HanXRQChr05g0146761 Helianthus annuus HOM05D005882 ORTHO05D007387 1.4e-12 77.8 88 51.1
vmacro20640 Vaccinium macrocarpon HOM05D005882 ORTHO05D007387 5.3e-12 75.9 109 43.1
Nn8g39344 Nelumbo nucifera HOM05D005882 ORTHO05D007387 4.5e-11 72.8 206 28.6
HPP92_002797 Vanilla planifolia HOM05D005882 ORTHO05D007387 5.9e-11 72.4 88 48.9
Sed0002298 Sechium edule HOM05D005882 ORTHO05D007387 3.8e-10 69.7 162 32.1
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 3.2e-09 66.6 60 55.0
HanXRQChr05g0148621 Helianthus annuus HOM05D005882 ORTHO05D007387 6.7e-07 58.9 83 44.6


User provided reference genes

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