Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 5.1e-27 123.6 61 100.0
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 9.0e-24 112.8 60 90.0
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 2.6e-23 111.3 61 88.5
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 1.3e-22 109.0 56 91.1
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 2.9e-22 107.8 59 84.7
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 5.0e-22 107.1 57 87.7
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 1.1e-21 105.9 56 87.5
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 1.9e-21 105.1 57 86.0
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 1.9e-21 105.1 55 89.1
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 3.2e-21 104.4 56 87.5
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 4.2e-21 104.0 54 88.9
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 4.2e-21 104.0 54 88.9
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 4.2e-21 104.0 54 88.9
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 7.2e-21 103.2 61 83.6
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 7.2e-21 103.2 51 96.1
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 9.3e-21 102.8 61 80.3
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 1.2e-20 102.4 55 87.3
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 1.6e-20 102.1 58 81.0
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 1.6e-20 102.1 57 82.5
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 2.1e-20 101.7 57 82.5
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 2.1e-20 101.7 53 88.7
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 2.7e-20 101.3 59 83.1
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 4.6e-20 100.5 59 78.0
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 4.6e-20 100.5 59 78.0
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 4.6e-20 100.5 55 85.5
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 4.6e-20 100.5 53 84.9
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 4.6e-20 100.5 61 80.3
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 7.9e-20 99.8 61 78.7
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.0e-19 99.4 52 90.4
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 1.0e-19 99.4 51 88.2
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 1.8e-19 98.6 61 78.7
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 2.3e-19 98.2 55 83.6
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 2.3e-19 98.2 60 75.0
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 3.0e-19 97.8 59 74.6
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 3.9e-19 97.4 59 78.0
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 3.9e-19 97.4 56 78.6
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 3.9e-19 97.4 53 84.9
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 5.1e-19 97.1 51 90.2
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 6.7e-19 96.7 60 73.3
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 6.7e-19 96.7 51 90.2
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 8.7e-19 96.3 60 76.7
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 8.7e-19 96.3 54 79.6
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 8.7e-19 96.3 55 80.0
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 8.7e-19 96.3 55 80.0
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 8.7e-19 96.3 55 80.0
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 8.7e-19 96.3 54 83.3
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 8.7e-19 96.3 60 73.3
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 1.1e-18 95.9 55 80.0
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 1.1e-18 95.9 55 80.0
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 1.1e-18 95.9 52 84.6
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 1.1e-18 95.9 52 86.5
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 1.1e-18 95.9 51 86.3
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 1.5e-18 95.5 55 80.0
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 1.5e-18 95.5 55 80.0
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 2.5e-18 94.7 55 78.2
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 2.5e-18 94.7 52 86.5
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 2.5e-18 94.7 55 78.2
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 4.3e-18 94.0 56 75.0
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 5.7e-18 93.6 51 84.3
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 5.7e-18 93.6 51 84.3
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 5.7e-18 93.6 54 77.8
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 4.8e-17 90.5 60 70.0
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 4.8e-17 90.5 51 82.4
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 1.1e-16 89.4 56 75.0
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 1.1e-16 89.4 51 84.3
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.5e-15 85.5 41 95.1
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 1.5e-15 85.5 41 95.1
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 1.5e-15 85.5 49 77.6
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 2.0e-15 85.1 51 76.5
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.0e-15 85.1 41 92.7
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 2.6e-15 84.7 51 74.5
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 2.6e-15 84.7 41 92.7
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 4.5e-15 84.0 41 92.7
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 7.7e-15 83.2 54 68.5
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 1.0e-14 82.8 48 77.1
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.0e-14 82.8 41 90.2
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 1.3e-14 82.4 45 82.2
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.7e-14 82.0 42 85.7
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 1.7e-14 82.0 41 87.8
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 1.7e-14 82.0 41 87.8
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 2.2e-14 81.6 51 74.5
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 6.5e-14 80.1 42 83.3
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 1.1e-13 79.3 50 76.0
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 1.1e-13 79.3 44 84.1
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 3.2e-13 77.8 39 89.7
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 7.2e-13 76.6 57 64.9
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 7.2e-13 76.6 57 64.9
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 1.4e-11 72.4 41 75.6
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 9.7e-10 66.2 34 88.2
Mapoly0009s0018 Marchantia polymorpha HOM05D007733 ORTHO05D009786 2.8e-09 64.7 47 61.7
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 4.8e-09 63.9 34 85.3
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 3.1e-08 61.2 51 68.6
CBR_g21252 Chara braunii HOM05D007733 ORTHO05D009786 4.5e-07 57.4 49 53.1


User provided reference genes

Program Settings